Literature DB >> 22220111

(E,E)-N,N-Bis(2,6-difluoro-benzyl-idene)butane-1,4-diamine.

Mohammad Khaledi Sardashti, Reza Kia, William Clegg, Ross W Harrington.   

Abstract

The asymmetric unit of the title compound, C(18)H(16)F(4)N(2), comprises two half crystallographically independent potentially bidentate Schiff base ligands, with an inversion centre located at the mid-point of the central C-C bond. The crystal packing is stabilized by inter-molecular C-H⋯F and π-π inter-actions [centroid-centroid distance = 3.8283 (11) Å].

Entities:  

Year:  2011        PMID: 22220111      PMCID: PMC3247493          DOI: 10.1107/S1600536811044801

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the synthesis and structural variations of Schiff base ligands and their complexes, see: Granovski et al. (1993 ▶); Elmali et al. (2000 ▶).

Experimental

Crystal data

C18H16F4N2 M = 336.33 Triclinic, a = 6.4672 (8) Å b = 8.9296 (12) Å c = 14.4939 (19) Å α = 104.956 (2)° β = 94.474 (2)° γ = 93.679 (2)° V = 803.10 (18) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 150 K 0.34 × 0.30 × 0.20 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.962, T max = 0.977 5828 measured reflections 2819 independent reflections 2394 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.100 S = 1.11 2819 reflections 218 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek,2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811044801/su2336sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044801/su2336Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044801/su2336Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H16F4N2Z = 2
Mr = 336.33F(000) = 348
Triclinic, P1Dx = 1.391 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4672 (8) ÅCell parameters from 4637 reflections
b = 8.9296 (12) Åθ = 2.9–28.3°
c = 14.4939 (19) ŵ = 0.12 mm1
α = 104.956 (2)°T = 150 K
β = 94.474 (2)°Block, colourless
γ = 93.679 (2)°0.34 × 0.30 × 0.20 mm
V = 803.10 (18) Å3
Bruker SMART 1K CCD area-detector diffractometer2819 independent reflections
Radiation source: fine-focus sealed tube2394 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 8.33 pixels mm-1θmax = 25.0°, θmin = 2.4°
ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→10
Tmin = 0.962, Tmax = 0.977l = −16→17
5828 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0437P)2 + 0.2616P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
2819 reflectionsΔρmax = 0.25 e Å3
218 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0064 (19)
Experimental. The low-temperature data were collected with the Oxford Cyrosystems Cryostream low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.1808 (2)0.73556 (16)0.64201 (10)0.0304 (3)
N20.1964 (2)0.08666 (15)0.86448 (9)0.0280 (3)
F10.19530 (16)1.11574 (12)0.54522 (8)0.0423 (3)
F20.57474 (16)0.85519 (11)0.73666 (7)0.0392 (3)
F30.14208 (16)0.33304 (13)0.78309 (9)0.0486 (3)
F40.76402 (16)0.30222 (12)0.96638 (8)0.0424 (3)
C10.3727 (2)1.10083 (19)0.59734 (11)0.0274 (4)
C20.5378 (3)1.21002 (19)0.60645 (12)0.0327 (4)
H20.52841.29240.57640.039*
C30.7184 (3)1.1967 (2)0.66064 (12)0.0323 (4)
H30.83481.27070.66770.039*
C40.7309 (2)1.07689 (19)0.70447 (12)0.0290 (4)
H40.85391.06860.74250.035*
C50.5610 (2)0.96960 (18)0.69179 (11)0.0260 (4)
C60.3742 (2)0.97517 (17)0.63782 (10)0.0236 (3)
C70.1858 (2)0.86668 (18)0.62385 (11)0.0262 (4)
H70.05930.89750.59950.031*
C8−0.0223 (3)0.6452 (2)0.62406 (12)0.0353 (4)
H8A−0.12860.70570.60110.042*
H8B−0.06270.62570.68470.042*
C9−0.0163 (3)0.49050 (19)0.54960 (12)0.0324 (4)
H9A0.09780.43430.57060.039*
H9B−0.14880.42630.54590.039*
C100.3370 (2)0.38982 (19)0.82192 (12)0.0285 (4)
C110.4160 (3)0.52544 (19)0.80426 (12)0.0335 (4)
H110.33510.57680.76640.040*
C120.6160 (3)0.58532 (19)0.84294 (12)0.0336 (4)
H120.67280.67900.83160.040*
C130.7339 (3)0.51022 (19)0.89783 (12)0.0331 (4)
H130.87120.55090.92450.040*
C140.6470 (3)0.37536 (18)0.91265 (12)0.0275 (4)
C150.4472 (2)0.30737 (17)0.87626 (11)0.0245 (3)
C160.3732 (2)0.15886 (18)0.89413 (11)0.0261 (4)
H160.46620.11370.93100.031*
C170.1558 (3)−0.06100 (18)0.88829 (12)0.0298 (4)
H17A0.2825−0.08460.92290.036*
H17B0.1225−0.14540.82840.036*
C18−0.0243 (2)−0.05570 (17)0.95036 (11)0.0248 (3)
H18A−0.1474−0.02380.91760.030*
H18B−0.0605−0.16150.95710.030*
U11U22U33U12U13U23
N10.0337 (8)0.0262 (7)0.0285 (7)−0.0040 (6)0.0007 (6)0.0044 (6)
N20.0307 (8)0.0286 (7)0.0266 (7)−0.0016 (6)0.0052 (6)0.0109 (6)
F10.0344 (6)0.0431 (6)0.0530 (7)−0.0030 (5)−0.0134 (5)0.0260 (5)
F20.0374 (6)0.0374 (6)0.0489 (6)0.0016 (4)−0.0052 (5)0.0257 (5)
F30.0304 (6)0.0456 (6)0.0743 (8)−0.0077 (5)−0.0171 (5)0.0333 (6)
F40.0352 (6)0.0387 (6)0.0568 (7)−0.0022 (4)−0.0143 (5)0.0255 (5)
C10.0260 (8)0.0301 (8)0.0258 (8)0.0033 (7)−0.0027 (6)0.0084 (7)
C20.0371 (10)0.0287 (9)0.0350 (9)−0.0022 (7)0.0009 (7)0.0155 (7)
C30.0289 (9)0.0348 (9)0.0318 (9)−0.0058 (7)0.0035 (7)0.0081 (7)
C40.0230 (8)0.0350 (9)0.0283 (8)0.0023 (7)0.0009 (7)0.0075 (7)
C50.0308 (9)0.0254 (8)0.0241 (8)0.0054 (7)0.0048 (7)0.0092 (6)
C60.0265 (8)0.0231 (8)0.0200 (7)0.0018 (6)0.0043 (6)0.0029 (6)
C70.0260 (8)0.0274 (8)0.0242 (8)0.0016 (6)0.0019 (6)0.0053 (6)
C80.0376 (10)0.0330 (9)0.0333 (9)−0.0093 (8)0.0081 (8)0.0069 (7)
C90.0382 (10)0.0260 (8)0.0323 (9)−0.0096 (7)0.0027 (7)0.0098 (7)
C100.0240 (8)0.0277 (8)0.0334 (9)0.0004 (7)−0.0009 (7)0.0088 (7)
C110.0392 (10)0.0287 (9)0.0349 (9)0.0038 (7)−0.0034 (8)0.0142 (7)
C120.0421 (10)0.0228 (8)0.0365 (9)−0.0041 (7)0.0004 (8)0.0116 (7)
C130.0301 (9)0.0285 (9)0.0382 (10)−0.0053 (7)−0.0045 (7)0.0087 (7)
C140.0278 (9)0.0261 (8)0.0297 (8)0.0048 (7)−0.0007 (7)0.0100 (7)
C150.0262 (8)0.0229 (8)0.0250 (8)0.0031 (6)0.0055 (6)0.0062 (6)
C160.0271 (9)0.0269 (8)0.0269 (8)0.0058 (7)0.0049 (7)0.0101 (7)
C170.0370 (9)0.0243 (8)0.0284 (9)−0.0009 (7)0.0064 (7)0.0076 (7)
C180.0281 (8)0.0212 (7)0.0246 (8)−0.0053 (6)−0.0003 (6)0.0080 (6)
N1—C71.264 (2)C8—H8B0.990
N1—C81.465 (2)C9—C9i1.520 (3)
N2—C161.262 (2)C9—H9A0.990
N2—C171.460 (2)C9—H9B0.990
F1—C11.3568 (18)C10—C111.376 (2)
F2—C51.3492 (18)C10—C151.396 (2)
F3—C101.3504 (19)C11—C121.384 (2)
F4—C141.3562 (18)C11—H110.950
C1—C21.373 (2)C12—C131.382 (2)
C1—C61.394 (2)C12—H120.950
C2—C31.385 (2)C13—C141.370 (2)
C2—H20.950C13—H130.950
C3—C41.382 (2)C14—C151.394 (2)
C3—H30.950C15—C161.473 (2)
C4—C51.379 (2)C16—H160.950
C4—H40.950C17—C181.522 (2)
C5—C61.398 (2)C17—H17A0.990
C6—C71.474 (2)C17—H17B0.990
C7—H70.950C18—C18ii1.520 (3)
C8—C91.523 (2)C18—H18A0.990
C8—H8A0.990C18—H18B0.990
C7—N1—C8116.31 (15)H9A—C9—H9B107.8
C16—N2—C17116.69 (14)F3—C10—C11117.55 (14)
F1—C1—C2117.90 (14)F3—C10—C15118.52 (14)
F1—C1—C6117.45 (14)C11—C10—C15123.92 (15)
C2—C1—C6124.65 (15)C10—C11—C12118.54 (15)
C1—C2—C3118.21 (15)C10—C11—H11120.7
C1—C2—H2120.9C12—C11—H11120.7
C3—C2—H2120.9C13—C12—C11120.70 (15)
C4—C3—C2120.62 (16)C13—C12—H12119.7
C4—C3—H3119.7C11—C12—H12119.7
C2—C3—H3119.7C14—C13—C12118.07 (16)
C5—C4—C3118.57 (15)C14—C13—H13121.0
C5—C4—H4120.7C12—C13—H13121.0
C3—C4—H4120.7F4—C14—C13117.68 (15)
F2—C5—C4117.69 (14)F4—C14—C15117.52 (14)
F2—C5—C6118.30 (14)C13—C14—C15124.80 (15)
C4—C5—C6123.98 (15)C14—C15—C10113.96 (14)
C1—C6—C5113.95 (14)C14—C15—C16119.93 (14)
C1—C6—C7119.55 (14)C10—C15—C16126.07 (15)
C5—C6—C7126.46 (14)N2—C16—C15125.39 (15)
N1—C7—C6124.53 (15)N2—C16—H16117.3
N1—C7—H7117.7C15—C16—H16117.3
C6—C7—H7117.7N2—C17—C18111.32 (13)
N1—C8—C9111.07 (14)N2—C17—H17A109.4
N1—C8—H8A109.4C18—C17—H17A109.4
C9—C8—H8A109.4N2—C17—H17B109.4
N1—C8—H8B109.4C18—C17—H17B109.4
C9—C8—H8B109.4H17A—C17—H17B108.0
H8A—C8—H8B108.0C18ii—C18—C17113.13 (16)
C9i—C9—C8112.91 (17)C18ii—C18—H18A109.0
C9i—C9—H9A109.0C17—C18—H18A109.0
C8—C9—H9A109.0C18ii—C18—H18B109.0
C9i—C9—H9B109.0C17—C18—H18B109.0
C8—C9—H9B109.0H18A—C18—H18B107.8
F1—C1—C2—C3179.14 (15)F3—C10—C11—C12−179.66 (15)
C6—C1—C2—C3−0.9 (3)C15—C10—C11—C12−0.5 (3)
C1—C2—C3—C4−0.2 (3)C10—C11—C12—C130.2 (3)
C2—C3—C4—C51.0 (2)C11—C12—C13—C140.0 (3)
C3—C4—C5—F2−178.75 (14)C12—C13—C14—F4179.83 (15)
C3—C4—C5—C6−0.8 (2)C12—C13—C14—C150.1 (3)
F1—C1—C6—C5−178.90 (13)F4—C14—C15—C10179.92 (14)
C2—C1—C6—C51.2 (2)C13—C14—C15—C10−0.3 (2)
F1—C1—C6—C7−0.8 (2)F4—C14—C15—C16−2.0 (2)
C2—C1—C6—C7179.26 (15)C13—C14—C15—C16177.79 (16)
F2—C5—C6—C1177.68 (13)F3—C10—C15—C14179.69 (14)
C4—C5—C6—C1−0.3 (2)C11—C10—C15—C140.5 (2)
F2—C5—C6—C7−0.2 (2)F3—C10—C15—C161.7 (2)
C4—C5—C6—C7−178.22 (15)C11—C10—C15—C16−177.44 (16)
C8—N1—C7—C6179.47 (14)C17—N2—C16—C15178.58 (14)
C1—C6—C7—N1166.67 (15)C14—C15—C16—N2−179.69 (15)
C5—C6—C7—N1−15.5 (2)C10—C15—C16—N2−1.8 (3)
C7—N1—C8—C9119.39 (16)C16—N2—C17—C18118.07 (16)
N1—C8—C9—C9i−66.7 (2)N2—C17—C18—C18ii−66.8 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···F3iii0.952.433.137 (2)131
C7—H7···F1iv0.952.543.378 (2)148
C12—H12···F20.952.423.192 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯F3i0.952.433.137 (2)131
C7—H7⋯F1ii0.952.543.378 (2)148
C12—H12⋯F20.952.423.192 (2)138

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  [N,N'-Bis(5-bromosalicylidene)-1,3-diaminopropane]nickel(II) and [N, N'-bis(5-chlorosalicylidene)-1,3-diaminopropane]copper(II).

Authors:  A Elmali; C T Zeyrek; Y Elerman; I Svoboda
Journal:  Acta Crystallogr C       Date:  2000-11       Impact factor: 1.172

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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