Literature DB >> 22220013

Ethyl 6-methyl-3-(2-methyl-prop-1-en-yl)-2-oxo-4-phenyl-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate.

Xi-Cun Wang1, Xue-Hong Tang, Yu-Xia Da, Zhang Zhang, Zheng-Jun Quan.   

Abstract

In the mol-ecule of the title compound, C(18)H(22)N(2)O(3), the dihydro-pyrimidinone ring adopts an envelope conformation. The dihedral angle between the phenyl ring and the mean plane through the enamine fragment is 86.04 (7)°. The mol-ecular conformation is stabilized by an intra-molecular C-H⋯O hydrogen bond. In the crystal, inter-molecular N-H⋯O hydrogen bonds link pairs of mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2011        PMID: 22220013      PMCID: PMC3247395          DOI: 10.1107/S1600536811042243

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and pharmaceutical applications of pyrimidino­nes, see: Atwal (1990 ▶); Matsuda & Hirao (1965 ▶); Müller et al. (2008 ▶). For a related structure, see: Fun et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C18H22N2O3 M = 314.38 Monoclinic, a = 14.114 (4) Å b = 8.298 (2) Å c = 14.629 (4) Å β = 93.959 (2)° V = 1709.3 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.25 × 0.24 × 0.22 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.979, T max = 0.982 11929 measured reflections 3180 independent reflections 2474 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.129 S = 0.96 3180 reflections 216 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042243/rz2648sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042243/rz2648Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042243/rz2648Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H22N2O3F(000) = 672
Mr = 314.38Dx = 1.222 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4330 reflections
a = 14.114 (4) Åθ = 2.8–26.4°
b = 8.298 (2) ŵ = 0.08 mm1
c = 14.629 (4) ÅT = 296 K
β = 93.959 (2)°Block, colourless
V = 1709.3 (8) Å30.25 × 0.24 × 0.22 mm
Z = 4
Bruker APEXII CCD diffractometer3180 independent reflections
Radiation source: fine-focus sealed tube2474 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 25.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −16→17
Tmin = 0.979, Tmax = 0.982k = −10→8
11929 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 0.96w = 1/[σ2(Fo2) + (0.0463P)2 + 1.3266P] where P = (Fo2 + 2Fc2)/3
3180 reflections(Δ/σ)max = 0.001
216 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.72325 (13)0.1486 (2)0.41220 (12)0.0366 (4)
C20.77888 (13)0.0257 (2)0.44302 (13)0.0388 (4)
C30.92081 (13)0.1942 (2)0.44340 (12)0.0371 (4)
C40.76336 (12)0.3183 (2)0.41569 (13)0.0365 (4)
H40.73320.37780.36360.044*
C50.62397 (14)0.1386 (3)0.37604 (14)0.0437 (5)
C60.48677 (19)−0.0234 (4)0.3462 (2)0.0869 (10)
H6A0.45030.06760.36620.104*
H6B0.4827−0.02460.27980.104*
C70.4492 (2)−0.1689 (5)0.3797 (2)0.1148 (14)
H7A0.4801−0.25900.35340.172*
H7B0.3822−0.17380.36310.172*
H7C0.4598−0.17230.44520.172*
C80.75390 (16)−0.1477 (3)0.45539 (18)0.0582 (6)
H8A0.6965−0.15510.48670.087*
H8B0.8045−0.20060.49090.087*
H8C0.7447−0.19860.39650.087*
C90.91126 (13)0.4621 (2)0.38297 (14)0.0423 (5)
H90.95330.50700.42770.051*
C100.89706 (15)0.5394 (3)0.30492 (15)0.0497 (5)
C110.9448 (2)0.7003 (3)0.2919 (2)0.0760 (8)
H11A0.97800.73270.34850.114*
H11B0.89770.77960.27380.114*
H11C0.98910.69070.24530.114*
C120.8374 (2)0.4801 (4)0.22492 (17)0.0868 (9)
H12A0.82160.36900.23420.130*
H12B0.87170.49000.17070.130*
H12C0.78020.54270.21790.130*
C130.73992 (13)0.4064 (2)0.50270 (14)0.0406 (5)
C140.79880 (18)0.4024 (3)0.58146 (16)0.0579 (6)
H140.85640.34810.58160.070*
C150.7738 (2)0.4779 (3)0.66064 (19)0.0778 (8)
H150.81460.47390.71330.093*
C160.6894 (2)0.5584 (3)0.6617 (2)0.0795 (9)
H160.67260.60860.71500.095*
C170.6301 (2)0.5647 (3)0.5843 (2)0.0730 (8)
H170.57260.61930.58490.088*
C180.65490 (15)0.4902 (3)0.50460 (18)0.0551 (6)
H180.61430.49640.45190.066*
N10.87357 (11)0.0582 (2)0.46786 (12)0.0415 (4)
N20.86624 (10)0.31325 (18)0.40381 (11)0.0374 (4)
O11.00791 (9)0.20302 (17)0.45540 (10)0.0488 (4)
O20.57967 (10)0.2533 (2)0.34516 (12)0.0628 (5)
O30.58555 (10)−0.0075 (2)0.38094 (12)0.0618 (5)
H10.9093 (16)−0.018 (3)0.4888 (15)0.052 (6)*
U11U22U33U12U13U23
C10.0337 (10)0.0370 (10)0.0396 (10)−0.0014 (8)0.0047 (8)0.0009 (8)
C20.0366 (10)0.0362 (10)0.0439 (10)−0.0029 (8)0.0062 (8)0.0002 (8)
C30.0342 (10)0.0368 (10)0.0408 (10)0.0020 (8)0.0050 (8)0.0024 (8)
C40.0295 (9)0.0357 (10)0.0444 (10)0.0011 (8)0.0028 (7)0.0067 (8)
C50.0379 (11)0.0466 (12)0.0467 (11)−0.0047 (9)0.0040 (8)−0.0024 (9)
C60.0550 (16)0.082 (2)0.120 (2)−0.0265 (15)−0.0249 (16)0.0113 (18)
C70.086 (2)0.162 (4)0.094 (2)−0.071 (2)−0.0088 (18)0.022 (2)
C80.0497 (13)0.0388 (12)0.0861 (17)−0.0040 (10)0.0037 (12)0.0065 (11)
C90.0349 (10)0.0401 (11)0.0520 (12)−0.0039 (8)0.0029 (8)0.0080 (9)
C100.0520 (12)0.0454 (12)0.0524 (12)0.0005 (10)0.0096 (10)0.0089 (10)
C110.0805 (18)0.0615 (16)0.0869 (19)−0.0118 (14)0.0118 (15)0.0278 (14)
C120.125 (3)0.087 (2)0.0479 (14)−0.0181 (19)0.0008 (15)0.0073 (14)
C130.0396 (10)0.0284 (10)0.0548 (12)−0.0030 (8)0.0101 (9)0.0036 (8)
C140.0628 (14)0.0543 (14)0.0564 (13)0.0086 (12)0.0015 (11)−0.0065 (11)
C150.106 (2)0.0690 (18)0.0584 (15)0.0009 (17)0.0081 (15)−0.0119 (13)
C160.106 (2)0.0566 (17)0.081 (2)−0.0116 (16)0.0432 (18)−0.0182 (14)
C170.0653 (16)0.0461 (14)0.112 (2)0.0006 (12)0.0415 (16)−0.0130 (15)
C180.0432 (12)0.0420 (12)0.0813 (16)0.0004 (10)0.0141 (11)−0.0041 (11)
N10.0340 (9)0.0335 (9)0.0569 (10)0.0033 (7)0.0017 (7)0.0096 (8)
N20.0305 (8)0.0344 (9)0.0476 (9)0.0014 (7)0.0051 (6)0.0078 (7)
O10.0296 (7)0.0477 (9)0.0691 (9)0.0014 (6)0.0025 (6)0.0112 (7)
O20.0429 (8)0.0586 (10)0.0841 (11)0.0027 (8)−0.0149 (8)0.0068 (9)
O30.0425 (8)0.0567 (10)0.0846 (12)−0.0162 (7)−0.0085 (8)0.0058 (8)
C1—C21.346 (3)C9—C101.313 (3)
C1—C51.465 (3)C9—N21.432 (2)
C1—C41.517 (3)C9—H90.9300
C2—N11.387 (2)C10—C121.478 (3)
C2—C81.495 (3)C10—C111.514 (3)
C3—O11.232 (2)C11—H11A0.9600
C3—N21.357 (2)C11—H11B0.9600
C3—N11.371 (2)C11—H11C0.9600
C4—N21.475 (2)C12—H12A0.9600
C4—C131.524 (3)C12—H12B0.9600
C4—H40.9800C12—H12C0.9600
C5—O21.209 (2)C13—C141.374 (3)
C5—O31.332 (3)C13—C181.389 (3)
C6—C71.419 (4)C14—C151.384 (3)
C6—O31.457 (3)C14—H140.9300
C6—H6A0.9700C15—C161.366 (4)
C6—H6B0.9700C15—H150.9300
C7—H7A0.9600C16—C171.362 (4)
C7—H7B0.9600C16—H160.9300
C7—H7C0.9600C17—C181.386 (4)
C8—H8A0.9600C17—H170.9300
C8—H8B0.9600C18—H180.9300
C8—H8C0.9600N1—H10.85 (2)
C2—C1—C5126.84 (18)C9—C10—C11119.8 (2)
C2—C1—C4118.95 (16)C12—C10—C11115.4 (2)
C5—C1—C4114.19 (16)C10—C11—H11A109.5
C1—C2—N1118.06 (17)C10—C11—H11B109.5
C1—C2—C8129.24 (18)H11A—C11—H11B109.5
N1—C2—C8112.70 (17)C10—C11—H11C109.5
O1—C3—N2123.30 (17)H11A—C11—H11C109.5
O1—C3—N1120.66 (17)H11B—C11—H11C109.5
N2—C3—N1116.02 (16)C10—C12—H12A109.5
N2—C4—C1109.75 (15)C10—C12—H12B109.5
N2—C4—C13112.60 (15)H12A—C12—H12B109.5
C1—C4—C13111.80 (15)C10—C12—H12C109.5
N2—C4—H4107.5H12A—C12—H12C109.5
C1—C4—H4107.5H12B—C12—H12C109.5
C13—C4—H4107.5C14—C13—C18118.0 (2)
O2—C5—O3122.32 (18)C14—C13—C4122.37 (18)
O2—C5—C1123.19 (19)C18—C13—C4119.65 (19)
O3—C5—C1114.49 (18)C13—C14—C15121.1 (2)
C7—C6—O3109.2 (3)C13—C14—H14119.4
C7—C6—H6A109.8C15—C14—H14119.4
O3—C6—H6A109.8C16—C15—C14120.2 (3)
C7—C6—H6B109.8C16—C15—H15119.9
O3—C6—H6B109.8C14—C15—H15119.9
H6A—C6—H6B108.3C17—C16—C15119.7 (3)
C6—C7—H7A109.5C17—C16—H16120.1
C6—C7—H7B109.5C15—C16—H16120.1
H7A—C7—H7B109.5C16—C17—C18120.4 (3)
C6—C7—H7C109.5C16—C17—H17119.8
H7A—C7—H7C109.5C18—C17—H17119.8
H7B—C7—H7C109.5C17—C18—C13120.6 (2)
C2—C8—H8A109.5C17—C18—H18119.7
C2—C8—H8B109.5C13—C18—H18119.7
H8A—C8—H8B109.5C3—N1—C2124.64 (17)
C2—C8—H8C109.5C3—N1—H1114.6 (15)
H8A—C8—H8C109.5C2—N1—H1119.2 (15)
H8B—C8—H8C109.5C3—N2—C9118.14 (15)
C10—C9—N2124.28 (19)C3—N2—C4120.31 (15)
C10—C9—H9117.9C9—N2—C4117.11 (15)
N2—C9—H9117.9C5—O3—C6116.56 (19)
C9—C10—C12124.8 (2)
C5—C1—C2—N1174.98 (18)C15—C16—C17—C18−0.1 (4)
C4—C1—C2—N1−6.5 (3)C16—C17—C18—C130.8 (4)
C5—C1—C2—C8−5.1 (4)C14—C13—C18—C17−1.1 (3)
C4—C1—C2—C8173.4 (2)C4—C13—C18—C17176.9 (2)
C2—C1—C4—N231.5 (2)O1—C3—N1—C2−168.31 (18)
C5—C1—C4—N2−149.80 (16)N2—C3—N1—C210.0 (3)
C2—C1—C4—C13−94.2 (2)C1—C2—N1—C3−16.6 (3)
C5—C1—C4—C1384.5 (2)C8—C2—N1—C3163.42 (19)
C2—C1—C5—O2−176.1 (2)O1—C3—N2—C9−6.1 (3)
C4—C1—C5—O25.3 (3)N1—C3—N2—C9175.65 (16)
C2—C1—C5—O34.7 (3)O1—C3—N2—C4−161.77 (18)
C4—C1—C5—O3−173.87 (17)N1—C3—N2—C420.0 (3)
N2—C9—C10—C12−4.0 (4)C10—C9—N2—C3134.3 (2)
N2—C9—C10—C11177.0 (2)C10—C9—N2—C4−69.3 (3)
N2—C4—C13—C14−33.4 (3)C1—C4—N2—C3−38.9 (2)
C1—C4—C13—C1490.7 (2)C13—C4—N2—C386.3 (2)
N2—C4—C13—C18148.68 (18)C1—C4—N2—C9165.15 (16)
C1—C4—C13—C18−87.2 (2)C13—C4—N2—C9−69.6 (2)
C18—C13—C14—C150.7 (3)O2—C5—O3—C60.5 (3)
C4—C13—C14—C15−177.2 (2)C1—C5—O3—C6179.7 (2)
C13—C14—C15—C160.0 (4)C7—C6—O3—C5−163.3 (3)
C14—C15—C16—C17−0.3 (4)
D—H···AD—HH···AD···AD—H···A
C18—H18···O20.932.583.176 (3)123.
N1—H1···O1i0.85 (2)2.06 (2)2.915 (2)177 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18⋯O20.932.583.176 (3)123
N1—H1⋯O1i0.85 (2)2.06 (2)2.915 (2)177 (2)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Hydroamination: direct addition of amines to alkenes and alkynes.

Authors:  Thomas E Müller; Kai C Hultzsch; Miguel Yus; Francisco Foubelo; Mizuki Tada
Journal:  Chem Rev       Date:  2008-08-26       Impact factor: 60.622

3.  Ethyl 4-(2,4-difluoro-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate.

Authors:  Hoong-Kun Fun; Chin Sing Yeap; M Babu; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

4.  Dihydropyrimidine calcium channel blockers: 2-heterosubstituted 4-aryl-1,4-dihydro-6-methyl-5-pyrimidinecarboxylic acid esters as potent mimics of dihydropyridines.

Authors:  K S Atwal; G C Rovnyak; J Schwartz; S Moreland; A Hedberg; J Z Gougoutas; M F Malley; D M Floyd
Journal:  J Med Chem       Date:  1990-05       Impact factor: 7.446

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.