Literature DB >> 22220008

N,N'-(Ethane-1,2-diyldi-o-phenyl-ene)bis-(pyridine-2-carboxamide).

Shuranjan Sarkar1, Hong-In Lee.   

Abstract

The title mol-ecule, C(26)H(22)N(4)O(2), is centrosymmetric and adopts an anti conformation. Two intra-molecular hydrogen bonds, viz. amide-pyridine N-H⋯N and phen-yl-amide C-H⋯O, stabilize the trans conformation of the (pyridine-2-carboxamido)-phenyl group about the amide plane. In the crystal, the presence of weak inter-molecular C-H⋯O hydrogen bonds results in the formation of a three-dimensional network.

Entities:  

Year:  2011        PMID: 22220008      PMCID: PMC3247390          DOI: 10.1107/S1600536811042309

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Meghdadi et al. (2006 ▶). For applications of the pyridine-bearing carboxamides, see: Song et al. (2010 ▶); Piguet et al. (1997 ▶); Lessmann & Horrocks (2000 ▶); Singh et al. (2008 ▶). For the synthesis of the ligand, see: Jain et al. (2004 ▶).

Experimental

Crystal data

C26H22N4O2 M = 422.48 Monoclinic, a = 5.9548 (5) Å b = 11.9548 (10) Å c = 14.8133 (12) Å β = 91.429 (2)° V = 1054.21 (15) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.25 × 0.16 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer 7762 measured reflections 2616 independent reflections 1118 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.090 S = 0.84 2616 reflections 149 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and CrystalMaker (CrystalMaker, 2007 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042309/kp2356sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042309/kp2356Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H22N4O2F(000) = 444
Mr = 422.48Dx = 1.331 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1330 reflections
a = 5.9548 (5) Åθ = 2.8–25.8°
b = 11.9548 (10) ŵ = 0.09 mm1
c = 14.8133 (12) ÅT = 200 K
β = 91.429 (2)°Block, colourless
V = 1054.21 (15) Å30.25 × 0.16 × 0.12 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1118 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.074
graphiteθmax = 28.3°, θmin = 2.2°
phi and ω scansh = −7→7
7762 measured reflectionsk = −15→11
2616 independent reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 0.84w = 1/[σ2(Fo2) + (0.0126P)2] where P = (Fo2 + 2Fc2)/3
2616 reflections(Δ/σ)max < 0.001
149 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.8708 (3)0.71472 (14)0.45440 (12)0.0405 (5)
C10.8708 (4)0.64611 (19)0.38332 (15)0.0499 (7)
H10.74660.64850.34180.060*
C21.0440 (5)0.57144 (19)0.36728 (17)0.0516 (8)
H21.03820.52370.31600.062*
C31.2230 (5)0.5680 (2)0.42681 (17)0.0545 (8)
H31.34350.51760.41740.065*
C41.2270 (4)0.63841 (18)0.50077 (15)0.0452 (7)
H41.35010.63780.54280.054*
C51.0471 (4)0.70976 (17)0.51194 (14)0.0321 (6)
C61.0488 (4)0.78986 (18)0.59027 (14)0.0316 (6)
O11.1900 (3)0.78453 (12)0.65163 (10)0.0425 (4)
N20.8816 (3)0.86669 (15)0.58299 (12)0.0333 (5)
H140.789 (4)0.8555 (18)0.5327 (15)0.073 (9)*
C70.8427 (4)0.96392 (17)0.63478 (13)0.0282 (5)
C80.6431 (4)1.02237 (17)0.61789 (13)0.0282 (5)
C90.4708 (4)0.98304 (17)0.54855 (12)0.0308 (5)
H9A0.32261.01490.56320.037*
H9B0.45870.90060.55180.037*
C100.6084 (4)1.12198 (18)0.66456 (14)0.0379 (6)
H100.47341.16270.65390.046*
C110.7673 (4)1.16257 (18)0.72620 (15)0.0425 (7)
H110.74121.23080.75710.051*
C120.9627 (4)1.10390 (19)0.74251 (14)0.0421 (7)
H121.07201.13180.78450.051*
C131.0005 (4)1.00386 (18)0.69758 (13)0.0352 (6)
H131.13430.96270.70980.042*
U11U22U33U12U13U23
N10.0473 (15)0.0353 (12)0.0385 (12)0.0060 (10)−0.0035 (10)−0.0072 (10)
C10.059 (2)0.0470 (17)0.0437 (16)0.0059 (14)−0.0067 (14)−0.0121 (13)
C20.074 (2)0.0395 (17)0.0413 (16)0.0124 (14)0.0094 (15)−0.0059 (13)
C30.068 (2)0.0478 (18)0.0481 (17)0.0240 (15)0.0113 (16)−0.0006 (14)
C40.0487 (19)0.0428 (16)0.0442 (16)0.0168 (13)0.0035 (13)0.0024 (13)
C50.0394 (16)0.0260 (13)0.0314 (13)0.0055 (10)0.0068 (11)0.0065 (10)
C60.0353 (16)0.0290 (14)0.0306 (13)0.0010 (11)0.0038 (11)0.0084 (11)
O10.0430 (12)0.0442 (10)0.0399 (10)0.0075 (8)−0.0103 (8)0.0046 (8)
N20.0355 (14)0.0330 (12)0.0311 (12)0.0081 (9)−0.0053 (10)−0.0056 (9)
C70.0318 (15)0.0292 (13)0.0239 (12)−0.0006 (10)0.0034 (10)−0.0018 (10)
C80.0305 (15)0.0296 (13)0.0249 (12)0.0001 (10)0.0053 (10)0.0028 (10)
C90.0291 (14)0.0310 (13)0.0324 (13)0.0025 (10)0.0043 (11)0.0031 (10)
C100.0444 (18)0.0344 (15)0.0354 (14)0.0044 (11)0.0102 (13)0.0012 (11)
C110.059 (2)0.0331 (15)0.0365 (14)−0.0052 (13)0.0141 (14)−0.0064 (11)
C120.0527 (19)0.0460 (17)0.0278 (13)−0.0140 (13)0.0034 (13)−0.0024 (12)
C130.0375 (16)0.0404 (15)0.0278 (13)−0.0035 (11)0.0026 (11)0.0015 (11)
N1—C11.335 (3)C7—C131.390 (3)
N1—C51.337 (3)C7—C81.396 (3)
C1—C21.389 (3)C8—C101.395 (3)
C1—H10.9500C8—C91.509 (3)
C2—C31.367 (3)C9—C9i1.543 (3)
C2—H20.9500C9—H9A0.9900
C3—C41.381 (3)C9—H9B0.9900
C3—H30.9500C10—C111.386 (3)
C4—C51.382 (3)C10—H100.9500
C4—H40.9500C11—C121.375 (3)
C5—C61.504 (3)C11—H110.9500
C6—O11.224 (2)C12—C131.390 (3)
C6—N21.357 (3)C12—H120.9500
N2—C71.415 (2)C13—H130.9500
N2—H140.93 (2)
C1—N1—C5117.4 (2)C13—C7—N2121.9 (2)
N1—C1—C2123.0 (2)C8—C7—N2117.7 (2)
N1—C1—H1118.5C10—C8—C7118.3 (2)
C2—C1—H1118.5C10—C8—C9119.8 (2)
C3—C2—C1118.6 (2)C7—C8—C9121.84 (19)
C3—C2—H2120.7C8—C9—C9i112.8 (2)
C1—C2—H2120.7C8—C9—H9A109.0
C2—C3—C4119.4 (2)C9i—C9—H9A109.0
C2—C3—H3120.3C8—C9—H9B109.0
C4—C3—H3120.3C9i—C9—H9B109.0
C3—C4—C5118.2 (2)H9A—C9—H9B107.8
C3—C4—H4120.9C11—C10—C8121.2 (2)
C5—C4—H4120.9C11—C10—H10119.4
N1—C5—C4123.3 (2)C8—C10—H10119.4
N1—C5—C6116.96 (19)C12—C11—C10119.9 (2)
C4—C5—C6119.7 (2)C12—C11—H11120.1
O1—C6—N2125.7 (2)C10—C11—H11120.1
O1—C6—C5122.1 (2)C11—C12—C13120.1 (2)
N2—C6—C5112.3 (2)C11—C12—H12120.0
C6—N2—C7130.0 (2)C13—C12—H12120.0
C6—N2—H14112.8 (15)C12—C13—C7120.1 (2)
C7—N2—H14116.9 (15)C12—C13—H13120.0
C13—C7—C8120.4 (2)C7—C13—H13120.0
C5—N1—C1—C2−0.1 (4)C6—N2—C7—C8−173.7 (2)
N1—C1—C2—C3−0.1 (4)C13—C7—C8—C100.9 (3)
C1—C2—C3—C4−0.1 (4)N2—C7—C8—C10−176.24 (18)
C2—C3—C4—C50.4 (4)C13—C7—C8—C9178.45 (17)
C1—N1—C5—C40.5 (3)N2—C7—C8—C91.3 (3)
C1—N1—C5—C6178.20 (18)C10—C8—C9—C9i96.1 (3)
C3—C4—C5—N1−0.6 (4)C7—C8—C9—C9i−81.4 (3)
C3—C4—C5—C6−178.3 (2)C7—C8—C10—C110.1 (3)
N1—C5—C6—O1172.4 (2)C9—C8—C10—C11−177.55 (19)
C4—C5—C6—O1−9.8 (3)C8—C10—C11—C12−0.4 (3)
N1—C5—C6—N2−8.7 (3)C10—C11—C12—C13−0.3 (3)
C4—C5—C6—N2169.2 (2)C11—C12—C13—C71.2 (3)
O1—C6—N2—C78.3 (4)C8—C7—C13—C12−1.5 (3)
C5—C6—N2—C7−170.7 (2)N2—C7—C13—C12175.5 (2)
C6—N2—C7—C139.2 (3)
D—H···AD—HH···AD···AD—H···A
N2—H14···N10.93 (2)2.11 (3)2.632 (2)114.7 (18)
C13—H13···O10.952.332.941 (3)122
C12—H12···O1ii0.952.483.352 (3)152
C9—H9B···O1iii0.992.613.299 (2)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H14⋯N10.93 (2)2.11 (3)2.632 (2)114.7 (18)
C13—H13⋯O10.952.332.941 (3)122
C12—H12⋯O1i0.952.483.352 (3)152
C9—H9B⋯O1ii0.992.613.299 (2)127

Symmetry codes: (i) ; (ii) .

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