Literature DB >> 22220006

2-{[2-(Piperazin-4-ium-1-yl)ethyl-iminio]meth-yl}phenolate 0.06-chloride 0.94-perchlorate.

Mohammad Reza Reisi, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

The structure of the title salt, C(13)H(20)N(3)O(+)·0.94ClO(4) (-)·0.06Cl(-), contains a zwitterionic Schiff base with a net positive charge and a perchlorate anion having substitutional disorder with Cl. In the cation, the azomethine N atom is protonated and donates hydrogen bonds to the phenolate O atom and to the tertiary N atom of the piperazine ring. In the crystal, two Schiff base mol-ecules are linked about a center of inversion by a pair of N-H⋯O hydrogen bonds. The resulting dimers are N-H⋯O and C-H⋯O hydrogen bonded to the perchlorate anions, forming a three-dimensional structure. The network is further consolidated by C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 22220006      PMCID: PMC3247388          DOI: 10.1107/S1600536811042255

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a nickel(II) complex of the ligand, see: Mukhopadhyay et al. (2003 ▶). For the structure of a cadmium(II) complex of the ligand, see: Saleh Salga et al. (2010 ▶).

Experimental

Crystal data

C13H20N3O+·0.94ClO4 −·0.06Cl− M = 329.74 Monoclinic, a = 11.2322 (2) Å b = 6.5240 (1) Å c = 21.0087 (4) Å β = 90.597 (1)° V = 1539.41 (5) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 100 K 0.28 × 0.22 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.927, T max = 0.952 11909 measured reflections 2860 independent reflections 2393 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.127 S = 1.04 2860 reflections 213 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.58 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: ’SHELXL97 (Sheldrick, 2008 ▶) and publCIF (Westrip, 2010 ▶)’. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042255/pv2459sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042255/pv2459Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042255/pv2459Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H20N3O+·0.94ClO4·0.06ClF(000) = 696
Mr = 329.74Dx = 1.423 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3417 reflections
a = 11.2322 (2) Åθ = 2.7–29.0°
b = 6.5240 (1) ŵ = 0.27 mm1
c = 21.0087 (4) ÅT = 100 K
β = 90.597 (1)°Block, brown
V = 1539.41 (5) Å30.28 × 0.22 × 0.18 mm
Z = 4
Bruker APEXII CCD diffractometer2860 independent reflections
Radiation source: fine-focus sealed tube2393 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.927, Tmax = 0.952k = −7→7
11909 measured reflectionsl = −24→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0613P)2 + 1.4958P] where P = (Fo2 + 2Fc2)/3
2860 reflections(Δ/σ)max = 0.001
213 parametersΔρmax = 0.58 e Å3
6 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.92876 (14)0.3289 (3)0.88619 (8)0.0288 (4)
N10.72796 (16)0.1530 (3)0.85235 (9)0.0241 (4)
H10.793 (2)0.153 (4)0.8761 (12)0.029*
N20.72451 (16)−0.0667 (3)0.97192 (9)0.0227 (4)
N30.85668 (19)−0.2651 (3)1.07210 (10)0.0279 (5)
H3A0.802 (3)−0.323 (4)1.0941 (13)0.033*
H3B0.934 (2)−0.290 (4)1.0894 (12)0.033*
C10.90467 (19)0.4724 (4)0.84465 (10)0.0232 (5)
C20.9791 (2)0.6457 (4)0.83660 (11)0.0258 (5)
H21.04910.65840.86200.031*
C30.9523 (2)0.7957 (4)0.79292 (11)0.0265 (5)
H31.00410.90990.78880.032*
C40.8498 (2)0.7835 (4)0.75421 (11)0.0285 (5)
H40.83250.88770.72390.034*
C50.7754 (2)0.6190 (4)0.76094 (11)0.0258 (5)
H50.70570.61000.73510.031*
C60.80000 (19)0.4627 (3)0.80549 (10)0.0224 (5)
C70.71557 (19)0.3007 (4)0.81201 (10)0.0233 (5)
H70.64680.30170.78530.028*
C80.6394 (2)−0.0046 (4)0.86529 (11)0.0267 (5)
H8A0.6691−0.14010.85140.032*
H8B0.56480.02550.84160.032*
C90.61617 (19)−0.0068 (4)0.93633 (11)0.0253 (5)
H9A0.59040.13110.95020.030*
H9B0.5513−0.10470.94560.030*
C100.7358 (2)−0.2908 (4)0.97354 (12)0.0279 (5)
H10A0.7346−0.34560.92960.034*
H10B0.6678−0.35070.99670.034*
C110.8518 (2)−0.3499 (4)1.00654 (12)0.0317 (6)
H11A0.8584−0.50111.00830.038*
H11B0.9197−0.29680.98180.038*
C120.8353 (2)−0.0404 (4)1.07244 (12)0.0284 (5)
H12A0.90280.03041.05200.034*
H12B0.83030.00851.11690.034*
C130.7209 (2)0.0115 (4)1.03721 (11)0.0274 (5)
H13A0.6525−0.04991.05970.033*
H13B0.70990.16201.03650.033*
Cl10.40865 (5)0.51801 (10)0.85512 (4)0.0300 (2)0.937 (3)
O20.4847 (3)0.5543 (5)0.90856 (15)0.0754 (9)0.937 (3)
O30.4569 (2)0.6021 (6)0.79982 (15)0.0915 (11)0.937 (3)
O40.29220 (18)0.5955 (4)0.86711 (11)0.0508 (6)0.937 (3)
O50.3970 (2)0.3003 (3)0.84855 (11)0.0556 (7)0.937 (3)
Cl20.4427 (11)0.4812 (19)0.8918 (7)0.035 (4)*0.063 (3)
U11U22U33U12U13U23
O10.0230 (8)0.0290 (9)0.0341 (9)−0.0034 (7)−0.0090 (7)0.0078 (7)
N10.0182 (9)0.0287 (11)0.0252 (10)−0.0029 (8)−0.0033 (8)0.0015 (8)
N20.0191 (9)0.0236 (10)0.0254 (10)0.0013 (8)−0.0021 (7)−0.0009 (8)
N30.0203 (10)0.0295 (11)0.0337 (11)−0.0054 (8)−0.0065 (8)0.0061 (9)
C10.0221 (11)0.0261 (12)0.0214 (11)0.0016 (9)0.0008 (9)−0.0008 (9)
C20.0220 (11)0.0283 (12)0.0272 (12)−0.0016 (9)−0.0020 (9)−0.0022 (10)
C30.0262 (12)0.0237 (12)0.0298 (12)−0.0021 (9)0.0064 (9)−0.0006 (10)
C40.0308 (12)0.0282 (13)0.0266 (12)0.0055 (10)0.0044 (10)0.0048 (10)
C50.0215 (11)0.0314 (13)0.0244 (12)0.0042 (9)−0.0012 (9)0.0009 (10)
C60.0205 (11)0.0247 (12)0.0222 (11)0.0018 (9)0.0008 (9)−0.0022 (9)
C70.0184 (10)0.0292 (12)0.0223 (11)0.0021 (9)−0.0021 (8)−0.0012 (9)
C80.0220 (11)0.0292 (13)0.0289 (12)−0.0053 (9)−0.0034 (9)0.0027 (10)
C90.0187 (11)0.0267 (12)0.0305 (13)0.0009 (9)0.0003 (9)0.0025 (10)
C100.0253 (12)0.0249 (12)0.0334 (13)0.0015 (9)−0.0079 (10)−0.0040 (10)
C110.0291 (12)0.0253 (13)0.0406 (14)0.0053 (10)−0.0108 (11)−0.0044 (11)
C120.0259 (12)0.0278 (13)0.0315 (13)−0.0027 (10)−0.0035 (10)−0.0037 (10)
C130.0260 (12)0.0270 (12)0.0293 (13)0.0024 (9)−0.0014 (10)−0.0039 (10)
Cl10.0209 (3)0.0334 (4)0.0357 (5)−0.0080 (2)−0.0022 (3)−0.0010 (3)
O20.0628 (17)0.0668 (17)0.095 (2)−0.0180 (14)−0.0517 (16)−0.0201 (16)
O30.0471 (15)0.134 (3)0.094 (2)0.0135 (16)0.0184 (14)0.080 (2)
O40.0304 (11)0.0582 (14)0.0639 (15)0.0050 (10)0.0055 (10)−0.0243 (12)
O50.0702 (16)0.0310 (12)0.0651 (15)−0.0043 (11)−0.0238 (12)−0.0091 (10)
O1—C11.306 (3)C6—C71.427 (3)
N1—C71.290 (3)C7—H70.9500
N1—C81.458 (3)C8—C91.518 (3)
N1—H10.88 (3)C8—H8A0.9900
N2—C131.464 (3)C8—H8B0.9900
N2—C101.468 (3)C9—H9A0.9900
N2—C91.474 (3)C9—H9B0.9900
N3—C111.485 (3)C10—C111.519 (3)
N3—C121.485 (3)C10—H10A0.9900
N3—H3A0.86 (3)C10—H10B0.9900
N3—H3B0.96 (3)C11—H11A0.9900
C1—C21.417 (3)C11—H11B0.9900
C1—C61.429 (3)C12—C131.514 (3)
C2—C31.373 (3)C12—H12A0.9900
C2—H20.9500C12—H12B0.9900
C3—C41.405 (3)C13—H13A0.9900
C3—H30.9500C13—H13B0.9900
C4—C51.369 (3)Cl1—O31.399 (3)
C4—H40.9500Cl1—O21.424 (3)
C5—C61.410 (3)Cl1—O41.427 (2)
C5—H50.9500Cl1—O51.433 (2)
C7—N1—C8125.5 (2)H8A—C8—H8B108.4
C7—N1—H1117.1 (17)N2—C9—C8110.59 (18)
C8—N1—H1117.3 (17)N2—C9—H9A109.5
C13—N2—C10109.16 (18)C8—C9—H9A109.5
C13—N2—C9110.63 (17)N2—C9—H9B109.5
C10—N2—C9110.26 (17)C8—C9—H9B109.5
C11—N3—C12111.59 (19)H9A—C9—H9B108.1
C11—N3—H3A108.3 (19)N2—C10—C11109.68 (19)
C12—N3—H3A108.3 (18)N2—C10—H10A109.7
C11—N3—H3B108.3 (16)C11—C10—H10A109.7
C12—N3—H3B108.3 (16)N2—C10—H10B109.7
H3A—N3—H3B112 (2)C11—C10—H10B109.7
O1—C1—C2122.2 (2)H10A—C10—H10B108.2
O1—C1—C6121.1 (2)N3—C11—C10110.6 (2)
C2—C1—C6116.7 (2)N3—C11—H11A109.5
C3—C2—C1121.5 (2)C10—C11—H11A109.5
C3—C2—H2119.2N3—C11—H11B109.5
C1—C2—H2119.2C10—C11—H11B109.5
C2—C3—C4121.3 (2)H11A—C11—H11B108.1
C2—C3—H3119.3N3—C12—C13110.77 (19)
C4—C3—H3119.3N3—C12—H12A109.5
C5—C4—C3118.8 (2)C13—C12—H12A109.5
C5—C4—H4120.6N3—C12—H12B109.5
C3—C4—H4120.6C13—C12—H12B109.5
C4—C5—C6121.3 (2)H12A—C12—H12B108.1
C4—C5—H5119.3N2—C13—C12110.40 (19)
C6—C5—H5119.3N2—C13—H13A109.6
C5—C6—C7118.2 (2)C12—C13—H13A109.6
C5—C6—C1120.3 (2)N2—C13—H13B109.6
C7—C6—C1121.4 (2)C12—C13—H13B109.6
N1—C7—C6123.3 (2)H13A—C13—H13B108.1
N1—C7—H7118.4O3—Cl1—O2110.8 (2)
C6—C7—H7118.4O3—Cl1—O4111.81 (16)
N1—C8—C9108.35 (19)O2—Cl1—O4110.21 (16)
N1—C8—H8A110.0O3—Cl1—O5110.2 (2)
C9—C8—H8A110.0O2—Cl1—O5107.10 (16)
N1—C8—H8B110.0O4—Cl1—O5106.59 (15)
C9—C8—H8B110.0
Cg1 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.88 (3)1.92 (3)2.622 (2)136 (2)
N1—H1···N20.88 (3)2.59 (3)2.893 (3)100.9 (19)
N3—H3A···O4i0.86 (3)2.23 (3)3.020 (3)153 (2)
N3—H3A···O5i0.86 (3)2.55 (3)3.325 (3)149 (2)
N3—H3B···O1ii0.96 (3)1.64 (3)2.589 (2)176 (2)
C5—H5···O5iii0.952.433.217 (3)140.
C7—H7···O3iv0.952.493.295 (3)142.
C9—H9B···O2v0.992.473.271 (4)138.
C13—H13A···O5i0.992.593.423 (4)142.
C13—H13B···O4vi0.992.573.263 (3)127.
C3—H3···Cg1vii0.952.703.500 (3)142
C8—H8A···Cg1v0.992.993.849 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.88 (3)1.92 (3)2.622 (2)136 (2)
N1—H1⋯N20.88 (3)2.59 (3)2.893 (3)100.9 (19)
N3—H3A⋯O4i0.86 (3)2.23 (3)3.020 (3)153 (2)
N3—H3A⋯O5i0.86 (3)2.55 (3)3.325 (3)149 (2)
N3—H3B⋯O1ii0.96 (3)1.64 (3)2.589 (2)176 (2)
C5—H5⋯O5iii0.952.433.217 (3)140
C7—H7⋯O3iv0.952.493.295 (3)142
C9—H9B⋯O2v0.992.473.271 (4)138
C13—H13A⋯O5i0.992.593.423 (4)142
C13—H13B⋯O4vi0.992.573.263 (3)127
C3—H3⋯Cg1vii0.952.703.500 (3)142
C8—H8ACg1v0.992.993.849 (3)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Equilibrium studies in solution involving nickel(II) complexes of flexidentate Schiff base ligands: isolation and structural characterization of the planar red and octahedral green species involved in the equilibrium.

Authors:  Suman Mukhopadhyay; Debdas Mandal; Dipesh Ghosh; Israel Goldberg; Muktimoy Chaudhury
Journal:  Inorg Chem       Date:  2003-12-15       Impact factor: 5.165

3.  Dichlorido(2-{[2-(piperazin-4-ium-1-yl)eth-yl]imino-meth-yl}phenolate)cadmium(II).

Authors:  Muhammad Saleh Salga; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18
  3 in total

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