| Literature DB >> 22220006 |
Mohammad Reza Reisi, Hamid Khaledi, Hapipah Mohd Ali.
Abstract
The structure of the title salt, C(13)H(20)N(3)O(+)·0.94ClO(4) (-)·0.06Cl(-), contains a zwitterionic Schiff base with a net positive charge and a perchlorate anion having substitutional disorder with Cl. In the cation, the azomethine N atom is protonated and donates hydrogen bonds to the phenolate O atom and to the tertiary N atom of the piperazine ring. In the crystal, two Schiff base mol-ecules are linked about a center of inversion by a pair of N-H⋯O hydrogen bonds. The resulting dimers are N-H⋯O and C-H⋯O hydrogen bonded to the perchlorate anions, forming a three-dimensional structure. The network is further consolidated by C-H⋯π inter-actions.Entities:
Year: 2011 PMID: 22220006 PMCID: PMC3247388 DOI: 10.1107/S1600536811042255
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H20N3O+·0.94ClO4−·0.06Cl− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3417 reflections |
| θ = 2.7–29.0° | |
| µ = 0.27 mm−1 | |
| β = 90.597 (1)° | Block, brown |
| 0.28 × 0.22 × 0.18 mm | |
| Bruker APEXII CCD diffractometer | 2860 independent reflections |
| Radiation source: fine-focus sealed tube | 2393 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 11909 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2860 reflections | (Δ/σ)max = 0.001 |
| 213 parameters | Δρmax = 0.58 e Å−3 |
| 6 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.92876 (14) | 0.3289 (3) | 0.88619 (8) | 0.0288 (4) | |
| N1 | 0.72796 (16) | 0.1530 (3) | 0.85235 (9) | 0.0241 (4) | |
| H1 | 0.793 (2) | 0.153 (4) | 0.8761 (12) | 0.029* | |
| N2 | 0.72451 (16) | −0.0667 (3) | 0.97192 (9) | 0.0227 (4) | |
| N3 | 0.85668 (19) | −0.2651 (3) | 1.07210 (10) | 0.0279 (5) | |
| H3A | 0.802 (3) | −0.323 (4) | 1.0941 (13) | 0.033* | |
| H3B | 0.934 (2) | −0.290 (4) | 1.0894 (12) | 0.033* | |
| C1 | 0.90467 (19) | 0.4724 (4) | 0.84465 (10) | 0.0232 (5) | |
| C2 | 0.9791 (2) | 0.6457 (4) | 0.83660 (11) | 0.0258 (5) | |
| H2 | 1.0491 | 0.6584 | 0.8620 | 0.031* | |
| C3 | 0.9523 (2) | 0.7957 (4) | 0.79292 (11) | 0.0265 (5) | |
| H3 | 1.0041 | 0.9099 | 0.7888 | 0.032* | |
| C4 | 0.8498 (2) | 0.7835 (4) | 0.75421 (11) | 0.0285 (5) | |
| H4 | 0.8325 | 0.8877 | 0.7239 | 0.034* | |
| C5 | 0.7754 (2) | 0.6190 (4) | 0.76094 (11) | 0.0258 (5) | |
| H5 | 0.7057 | 0.6100 | 0.7351 | 0.031* | |
| C6 | 0.80000 (19) | 0.4627 (3) | 0.80549 (10) | 0.0224 (5) | |
| C7 | 0.71557 (19) | 0.3007 (4) | 0.81201 (10) | 0.0233 (5) | |
| H7 | 0.6468 | 0.3017 | 0.7853 | 0.028* | |
| C8 | 0.6394 (2) | −0.0046 (4) | 0.86529 (11) | 0.0267 (5) | |
| H8A | 0.6691 | −0.1401 | 0.8514 | 0.032* | |
| H8B | 0.5648 | 0.0255 | 0.8416 | 0.032* | |
| C9 | 0.61617 (19) | −0.0068 (4) | 0.93633 (11) | 0.0253 (5) | |
| H9A | 0.5904 | 0.1311 | 0.9502 | 0.030* | |
| H9B | 0.5513 | −0.1047 | 0.9456 | 0.030* | |
| C10 | 0.7358 (2) | −0.2908 (4) | 0.97354 (12) | 0.0279 (5) | |
| H10A | 0.7346 | −0.3456 | 0.9296 | 0.034* | |
| H10B | 0.6678 | −0.3507 | 0.9967 | 0.034* | |
| C11 | 0.8518 (2) | −0.3499 (4) | 1.00654 (12) | 0.0317 (6) | |
| H11A | 0.8584 | −0.5011 | 1.0083 | 0.038* | |
| H11B | 0.9197 | −0.2968 | 0.9818 | 0.038* | |
| C12 | 0.8353 (2) | −0.0404 (4) | 1.07244 (12) | 0.0284 (5) | |
| H12A | 0.9028 | 0.0304 | 1.0520 | 0.034* | |
| H12B | 0.8303 | 0.0085 | 1.1169 | 0.034* | |
| C13 | 0.7209 (2) | 0.0115 (4) | 1.03721 (11) | 0.0274 (5) | |
| H13A | 0.6525 | −0.0499 | 1.0597 | 0.033* | |
| H13B | 0.7099 | 0.1620 | 1.0365 | 0.033* | |
| Cl1 | 0.40865 (5) | 0.51801 (10) | 0.85512 (4) | 0.0300 (2) | 0.937 (3) |
| O2 | 0.4847 (3) | 0.5543 (5) | 0.90856 (15) | 0.0754 (9) | 0.937 (3) |
| O3 | 0.4569 (2) | 0.6021 (6) | 0.79982 (15) | 0.0915 (11) | 0.937 (3) |
| O4 | 0.29220 (18) | 0.5955 (4) | 0.86711 (11) | 0.0508 (6) | 0.937 (3) |
| O5 | 0.3970 (2) | 0.3003 (3) | 0.84855 (11) | 0.0556 (7) | 0.937 (3) |
| Cl2 | 0.4427 (11) | 0.4812 (19) | 0.8918 (7) | 0.035 (4)* | 0.063 (3) |
| O1 | 0.0230 (8) | 0.0290 (9) | 0.0341 (9) | −0.0034 (7) | −0.0090 (7) | 0.0078 (7) |
| N1 | 0.0182 (9) | 0.0287 (11) | 0.0252 (10) | −0.0029 (8) | −0.0033 (8) | 0.0015 (8) |
| N2 | 0.0191 (9) | 0.0236 (10) | 0.0254 (10) | 0.0013 (8) | −0.0021 (7) | −0.0009 (8) |
| N3 | 0.0203 (10) | 0.0295 (11) | 0.0337 (11) | −0.0054 (8) | −0.0065 (8) | 0.0061 (9) |
| C1 | 0.0221 (11) | 0.0261 (12) | 0.0214 (11) | 0.0016 (9) | 0.0008 (9) | −0.0008 (9) |
| C2 | 0.0220 (11) | 0.0283 (12) | 0.0272 (12) | −0.0016 (9) | −0.0020 (9) | −0.0022 (10) |
| C3 | 0.0262 (12) | 0.0237 (12) | 0.0298 (12) | −0.0021 (9) | 0.0064 (9) | −0.0006 (10) |
| C4 | 0.0308 (12) | 0.0282 (13) | 0.0266 (12) | 0.0055 (10) | 0.0044 (10) | 0.0048 (10) |
| C5 | 0.0215 (11) | 0.0314 (13) | 0.0244 (12) | 0.0042 (9) | −0.0012 (9) | 0.0009 (10) |
| C6 | 0.0205 (11) | 0.0247 (12) | 0.0222 (11) | 0.0018 (9) | 0.0008 (9) | −0.0022 (9) |
| C7 | 0.0184 (10) | 0.0292 (12) | 0.0223 (11) | 0.0021 (9) | −0.0021 (8) | −0.0012 (9) |
| C8 | 0.0220 (11) | 0.0292 (13) | 0.0289 (12) | −0.0053 (9) | −0.0034 (9) | 0.0027 (10) |
| C9 | 0.0187 (11) | 0.0267 (12) | 0.0305 (13) | 0.0009 (9) | 0.0003 (9) | 0.0025 (10) |
| C10 | 0.0253 (12) | 0.0249 (12) | 0.0334 (13) | 0.0015 (9) | −0.0079 (10) | −0.0040 (10) |
| C11 | 0.0291 (12) | 0.0253 (13) | 0.0406 (14) | 0.0053 (10) | −0.0108 (11) | −0.0044 (11) |
| C12 | 0.0259 (12) | 0.0278 (13) | 0.0315 (13) | −0.0027 (10) | −0.0035 (10) | −0.0037 (10) |
| C13 | 0.0260 (12) | 0.0270 (12) | 0.0293 (13) | 0.0024 (9) | −0.0014 (10) | −0.0039 (10) |
| Cl1 | 0.0209 (3) | 0.0334 (4) | 0.0357 (5) | −0.0080 (2) | −0.0022 (3) | −0.0010 (3) |
| O2 | 0.0628 (17) | 0.0668 (17) | 0.095 (2) | −0.0180 (14) | −0.0517 (16) | −0.0201 (16) |
| O3 | 0.0471 (15) | 0.134 (3) | 0.094 (2) | 0.0135 (16) | 0.0184 (14) | 0.080 (2) |
| O4 | 0.0304 (11) | 0.0582 (14) | 0.0639 (15) | 0.0050 (10) | 0.0055 (10) | −0.0243 (12) |
| O5 | 0.0702 (16) | 0.0310 (12) | 0.0651 (15) | −0.0043 (11) | −0.0238 (12) | −0.0091 (10) |
| O1—C1 | 1.306 (3) | C6—C7 | 1.427 (3) |
| N1—C7 | 1.290 (3) | C7—H7 | 0.9500 |
| N1—C8 | 1.458 (3) | C8—C9 | 1.518 (3) |
| N1—H1 | 0.88 (3) | C8—H8A | 0.9900 |
| N2—C13 | 1.464 (3) | C8—H8B | 0.9900 |
| N2—C10 | 1.468 (3) | C9—H9A | 0.9900 |
| N2—C9 | 1.474 (3) | C9—H9B | 0.9900 |
| N3—C11 | 1.485 (3) | C10—C11 | 1.519 (3) |
| N3—C12 | 1.485 (3) | C10—H10A | 0.9900 |
| N3—H3A | 0.86 (3) | C10—H10B | 0.9900 |
| N3—H3B | 0.96 (3) | C11—H11A | 0.9900 |
| C1—C2 | 1.417 (3) | C11—H11B | 0.9900 |
| C1—C6 | 1.429 (3) | C12—C13 | 1.514 (3) |
| C2—C3 | 1.373 (3) | C12—H12A | 0.9900 |
| C2—H2 | 0.9500 | C12—H12B | 0.9900 |
| C3—C4 | 1.405 (3) | C13—H13A | 0.9900 |
| C3—H3 | 0.9500 | C13—H13B | 0.9900 |
| C4—C5 | 1.369 (3) | Cl1—O3 | 1.399 (3) |
| C4—H4 | 0.9500 | Cl1—O2 | 1.424 (3) |
| C5—C6 | 1.410 (3) | Cl1—O4 | 1.427 (2) |
| C5—H5 | 0.9500 | Cl1—O5 | 1.433 (2) |
| C7—N1—C8 | 125.5 (2) | H8A—C8—H8B | 108.4 |
| C7—N1—H1 | 117.1 (17) | N2—C9—C8 | 110.59 (18) |
| C8—N1—H1 | 117.3 (17) | N2—C9—H9A | 109.5 |
| C13—N2—C10 | 109.16 (18) | C8—C9—H9A | 109.5 |
| C13—N2—C9 | 110.63 (17) | N2—C9—H9B | 109.5 |
| C10—N2—C9 | 110.26 (17) | C8—C9—H9B | 109.5 |
| C11—N3—C12 | 111.59 (19) | H9A—C9—H9B | 108.1 |
| C11—N3—H3A | 108.3 (19) | N2—C10—C11 | 109.68 (19) |
| C12—N3—H3A | 108.3 (18) | N2—C10—H10A | 109.7 |
| C11—N3—H3B | 108.3 (16) | C11—C10—H10A | 109.7 |
| C12—N3—H3B | 108.3 (16) | N2—C10—H10B | 109.7 |
| H3A—N3—H3B | 112 (2) | C11—C10—H10B | 109.7 |
| O1—C1—C2 | 122.2 (2) | H10A—C10—H10B | 108.2 |
| O1—C1—C6 | 121.1 (2) | N3—C11—C10 | 110.6 (2) |
| C2—C1—C6 | 116.7 (2) | N3—C11—H11A | 109.5 |
| C3—C2—C1 | 121.5 (2) | C10—C11—H11A | 109.5 |
| C3—C2—H2 | 119.2 | N3—C11—H11B | 109.5 |
| C1—C2—H2 | 119.2 | C10—C11—H11B | 109.5 |
| C2—C3—C4 | 121.3 (2) | H11A—C11—H11B | 108.1 |
| C2—C3—H3 | 119.3 | N3—C12—C13 | 110.77 (19) |
| C4—C3—H3 | 119.3 | N3—C12—H12A | 109.5 |
| C5—C4—C3 | 118.8 (2) | C13—C12—H12A | 109.5 |
| C5—C4—H4 | 120.6 | N3—C12—H12B | 109.5 |
| C3—C4—H4 | 120.6 | C13—C12—H12B | 109.5 |
| C4—C5—C6 | 121.3 (2) | H12A—C12—H12B | 108.1 |
| C4—C5—H5 | 119.3 | N2—C13—C12 | 110.40 (19) |
| C6—C5—H5 | 119.3 | N2—C13—H13A | 109.6 |
| C5—C6—C7 | 118.2 (2) | C12—C13—H13A | 109.6 |
| C5—C6—C1 | 120.3 (2) | N2—C13—H13B | 109.6 |
| C7—C6—C1 | 121.4 (2) | C12—C13—H13B | 109.6 |
| N1—C7—C6 | 123.3 (2) | H13A—C13—H13B | 108.1 |
| N1—C7—H7 | 118.4 | O3—Cl1—O2 | 110.8 (2) |
| C6—C7—H7 | 118.4 | O3—Cl1—O4 | 111.81 (16) |
| N1—C8—C9 | 108.35 (19) | O2—Cl1—O4 | 110.21 (16) |
| N1—C8—H8A | 110.0 | O3—Cl1—O5 | 110.2 (2) |
| C9—C8—H8A | 110.0 | O2—Cl1—O5 | 107.10 (16) |
| N1—C8—H8B | 110.0 | O4—Cl1—O5 | 106.59 (15) |
| C9—C8—H8B | 110.0 |
| Cg1 is the centroid of the C1–C6 ring. |
| H··· | ||||
| N1—H1···O1 | 0.88 (3) | 1.92 (3) | 2.622 (2) | 136 (2) |
| N1—H1···N2 | 0.88 (3) | 2.59 (3) | 2.893 (3) | 100.9 (19) |
| N3—H3A···O4i | 0.86 (3) | 2.23 (3) | 3.020 (3) | 153 (2) |
| N3—H3A···O5i | 0.86 (3) | 2.55 (3) | 3.325 (3) | 149 (2) |
| N3—H3B···O1ii | 0.96 (3) | 1.64 (3) | 2.589 (2) | 176 (2) |
| C5—H5···O5iii | 0.95 | 2.43 | 3.217 (3) | 140. |
| C7—H7···O3iv | 0.95 | 2.49 | 3.295 (3) | 142. |
| C9—H9B···O2v | 0.99 | 2.47 | 3.271 (4) | 138. |
| C13—H13A···O5i | 0.99 | 2.59 | 3.423 (4) | 142. |
| C13—H13B···O4vi | 0.99 | 2.57 | 3.263 (3) | 127. |
| C3—H3···Cg1vii | 0.95 | 2.70 | 3.500 (3) | 142 |
| C8—H8A···Cg1v | 0.99 | 2.99 | 3.849 (3) | 145 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1 | 0.88 (3) | 1.92 (3) | 2.622 (2) | 136 (2) |
| N1—H1⋯N2 | 0.88 (3) | 2.59 (3) | 2.893 (3) | 100.9 (19) |
| N3—H3 | 0.86 (3) | 2.23 (3) | 3.020 (3) | 153 (2) |
| N3—H3 | 0.86 (3) | 2.55 (3) | 3.325 (3) | 149 (2) |
| N3—H3 | 0.96 (3) | 1.64 (3) | 2.589 (2) | 176 (2) |
| C5—H5⋯O5iii | 0.95 | 2.43 | 3.217 (3) | 140 |
| C7—H7⋯O3iv | 0.95 | 2.49 | 3.295 (3) | 142 |
| C9—H9 | 0.99 | 2.47 | 3.271 (4) | 138 |
| C13—H13 | 0.99 | 2.59 | 3.423 (4) | 142 |
| C13—H13 | 0.99 | 2.57 | 3.263 (3) | 127 |
| C3—H3⋯ | 0.95 | 2.70 | 3.500 (3) | 142 |
| C8—H8 | 0.99 | 2.99 | 3.849 (3) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .