Literature DB >> 22220004

(E)-4-Chloro-2-{[4-(3,5-dichloro-pyridin-2-yl-oxy)phenyl-imino]-meth-yl}phenol.

Hong-Bo Ji, Pei-Zhi Zhang, Jun Wu.   

Abstract

In the title mol-ecule, C(18)H(11)Cl(3)N(2)O(2), the central benzene ring is oriented at 8.44 (12) and 70.57 (11)° with respect to the terminal chloro-phenol and dichloro-pyridine rings, respectively. The mol-ecular structure is stabilized by an intra-molecular O-H⋯N hydrogen bond, which generates an S(6) ring motif. In the crystal, π-π stacking between parallel pyridine rings is observed [centroid-centroid distance = 3.6561 (14) Å].

Entities:  

Year:  2011        PMID: 22220004      PMCID: PMC3247386          DOI: 10.1107/S1600536811041584

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the pharmacological activity of Schiff base compounds, see: Shapiro (1998 ▶); Venugopal & Jayashree (2008 ▶); Pandey et al. (2003 ▶); Bhat et al. (2005 ▶); Wadher et al. (2009 ▶). For a related structure, see: Fun et al. (2011 ▶).

Experimental

Crystal data

C18H11Cl3N2O2 M = 393.64 Monoclinic, a = 13.8981 (7) Å b = 11.7006 (8) Å c = 10.5034 (5) Å β = 95.318 (5)° V = 1700.67 (16) Å3 Z = 4 Mo Kα radiation μ = 0.55 mm−1 T = 293 K 0.38 × 0.36 × 0.29 mm

Data collection

Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.817, T max = 0.856 7882 measured reflections 3107 independent reflections 2186 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.100 S = 1.03 3107 reflections 227 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811041584/xu5335sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041584/xu5335Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041584/xu5335Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H11Cl3N2O2F(000) = 800
Mr = 393.64Dx = 1.537 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1892 reflections
a = 13.8981 (7) Åθ = 2.9–29.5°
b = 11.7006 (8) ŵ = 0.55 mm1
c = 10.5034 (5) ÅT = 293 K
β = 95.318 (5)°Block, yellow
V = 1700.67 (16) Å30.38 × 0.36 × 0.29 mm
Z = 4
Oxford Diffraction Xcalibur Atlas Gemini ultra diffractometer3107 independent reflections
Radiation source: fine-focus sealed tube2186 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 10.3592 pixels mm-1θmax = 25.4°, θmin = 2.9°
ω scansh = −16→16
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −14→8
Tmin = 0.817, Tmax = 0.856l = −12→12
7882 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0376P)2 + 0.5849P] where P = (Fo2 + 2Fc2)/3
3107 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.24721 (6)0.26343 (9)1.31374 (10)0.1009 (3)
Cl20.53771 (6)0.21299 (7)0.55024 (6)0.0716 (2)
Cl30.41754 (6)0.53738 (7)0.20843 (6)0.0723 (2)
O10.08837 (14)0.54210 (18)1.22171 (19)0.0727 (6)
H10.11400.51961.15910.109*
O20.37377 (13)0.29274 (16)0.67705 (16)0.0629 (5)
N10.11798 (14)0.40766 (18)1.03385 (17)0.0464 (5)
N20.32327 (15)0.4354 (2)0.53329 (19)0.0570 (6)
C10.01103 (17)0.4760 (2)1.2388 (2)0.0503 (6)
C2−0.0441 (2)0.5020 (3)1.3378 (2)0.0618 (7)
H2−0.02750.56461.38990.074*
C3−0.1226 (2)0.4374 (3)1.3606 (3)0.0635 (8)
H3−0.15920.45601.42740.076*
C4−0.14696 (18)0.3448 (3)1.2841 (3)0.0605 (7)
C5−0.09479 (18)0.3184 (2)1.1840 (2)0.0556 (6)
H5−0.11300.25631.13200.067*
C6−0.01468 (16)0.3832 (2)1.1588 (2)0.0452 (6)
C70.04132 (17)0.3533 (2)1.0541 (2)0.0479 (6)
H70.02090.29321.00040.057*
C80.17777 (16)0.3761 (2)0.9376 (2)0.0439 (6)
C90.16860 (18)0.2763 (2)0.8667 (2)0.0587 (7)
H90.11920.22510.87960.070*
C100.23239 (19)0.2524 (3)0.7770 (2)0.0580 (7)
H100.22580.18560.72900.070*
C110.30536 (18)0.3275 (2)0.7592 (2)0.0506 (6)
C120.31653 (19)0.4262 (2)0.8286 (3)0.0605 (7)
H120.36650.47660.81590.073*
C130.25235 (18)0.4498 (2)0.9179 (2)0.0545 (6)
H130.25960.51670.96570.065*
C140.38386 (18)0.3526 (2)0.5682 (2)0.0483 (6)
C150.45916 (17)0.3205 (2)0.4973 (2)0.0463 (6)
C160.47057 (17)0.3767 (2)0.3851 (2)0.0475 (6)
H160.51990.35710.33510.057*
C170.40660 (18)0.4631 (2)0.3490 (2)0.0495 (6)
C180.33466 (19)0.4902 (2)0.4238 (2)0.0580 (7)
H180.29210.54880.39780.070*
U11U22U33U12U13U23
Cl10.0704 (5)0.0995 (7)0.1413 (8)−0.0127 (5)0.0547 (5)0.0032 (6)
Cl20.0835 (5)0.0768 (5)0.0579 (4)0.0333 (4)0.0250 (3)0.0073 (4)
Cl30.0867 (5)0.0815 (6)0.0517 (4)0.0132 (4)0.0228 (3)0.0158 (3)
O10.0733 (13)0.0749 (15)0.0738 (13)−0.0208 (11)0.0273 (10)−0.0201 (11)
O20.0720 (12)0.0679 (13)0.0535 (10)0.0212 (10)0.0307 (9)0.0124 (9)
N10.0459 (11)0.0541 (13)0.0406 (10)0.0016 (10)0.0124 (9)0.0025 (9)
N20.0572 (13)0.0677 (15)0.0487 (12)0.0133 (11)0.0180 (10)0.0065 (11)
C10.0479 (14)0.0581 (17)0.0461 (13)−0.0003 (12)0.0102 (11)0.0045 (12)
C20.0675 (18)0.0693 (19)0.0505 (15)0.0029 (15)0.0158 (13)−0.0090 (14)
C30.0595 (17)0.080 (2)0.0543 (15)0.0136 (15)0.0251 (13)0.0055 (15)
C40.0474 (14)0.0638 (19)0.0734 (18)0.0041 (13)0.0226 (13)0.0107 (15)
C50.0516 (14)0.0543 (16)0.0623 (16)0.0013 (13)0.0120 (13)−0.0016 (13)
C60.0448 (13)0.0490 (15)0.0426 (12)0.0053 (11)0.0082 (10)0.0051 (11)
C70.0503 (14)0.0495 (15)0.0445 (13)0.0045 (12)0.0079 (11)−0.0029 (11)
C80.0442 (13)0.0513 (15)0.0372 (12)0.0039 (11)0.0083 (10)0.0028 (11)
C90.0523 (15)0.0645 (19)0.0617 (16)−0.0102 (13)0.0188 (13)−0.0100 (14)
C100.0607 (16)0.0637 (18)0.0505 (15)0.0014 (14)0.0097 (12)−0.0125 (13)
C110.0549 (15)0.0577 (17)0.0415 (13)0.0128 (13)0.0164 (11)0.0074 (12)
C120.0572 (15)0.0607 (19)0.0674 (17)−0.0055 (13)0.0259 (13)−0.0009 (14)
C130.0580 (15)0.0552 (17)0.0523 (14)−0.0028 (13)0.0157 (12)−0.0065 (12)
C140.0541 (14)0.0533 (16)0.0393 (13)0.0034 (12)0.0139 (11)−0.0016 (11)
C150.0499 (13)0.0476 (15)0.0426 (12)0.0033 (11)0.0104 (11)−0.0053 (11)
C160.0478 (13)0.0570 (16)0.0398 (12)−0.0020 (12)0.0149 (11)−0.0093 (11)
C170.0555 (15)0.0561 (16)0.0377 (12)−0.0022 (12)0.0080 (11)−0.0001 (11)
C180.0603 (16)0.0653 (18)0.0499 (15)0.0129 (14)0.0129 (13)0.0074 (13)
Cl1—C41.739 (3)C5—H50.9300
Cl2—C151.724 (2)C6—C71.448 (3)
Cl3—C171.732 (2)C7—H70.9300
O1—C11.349 (3)C8—C131.379 (3)
O1—H10.8200C8—C91.384 (3)
O2—C141.359 (3)C9—C101.381 (3)
O2—C111.402 (3)C9—H90.9300
N1—C71.275 (3)C10—C111.368 (4)
N1—C81.416 (3)C10—H100.9300
N2—C141.314 (3)C11—C121.367 (4)
N2—C181.339 (3)C12—C131.381 (3)
C1—C21.381 (3)C12—H120.9300
C1—C61.400 (3)C13—H130.9300
C2—C31.366 (4)C14—C151.391 (3)
C2—H20.9300C15—C161.371 (3)
C3—C41.372 (4)C16—C171.376 (3)
C3—H30.9300C16—H160.9300
C4—C51.366 (3)C17—C181.365 (3)
C5—C61.393 (3)C18—H180.9300
C1—O1—H1109.5C10—C9—H9119.8
C14—O2—C11119.80 (19)C8—C9—H9119.8
C7—N1—C8122.9 (2)C11—C10—C9119.6 (3)
C14—N2—C18118.0 (2)C11—C10—H10120.2
O1—C1—C2118.6 (2)C9—C10—H10120.2
O1—C1—C6121.8 (2)C12—C11—C10121.2 (2)
C2—C1—C6119.6 (2)C12—C11—O2121.6 (2)
C3—C2—C1121.1 (3)C10—C11—O2116.9 (2)
C3—C2—H2119.4C11—C12—C13118.9 (2)
C1—C2—H2119.4C11—C12—H12120.6
C2—C3—C4119.5 (3)C13—C12—H12120.6
C2—C3—H3120.3C8—C13—C12121.2 (2)
C4—C3—H3120.3C8—C13—H13119.4
C5—C4—C3120.6 (3)C12—C13—H13119.4
C5—C4—Cl1120.3 (2)N2—C14—O2120.1 (2)
C3—C4—Cl1119.0 (2)N2—C14—C15123.0 (2)
C4—C5—C6120.9 (3)O2—C14—C15116.9 (2)
C4—C5—H5119.5C16—C15—C14118.9 (2)
C6—C5—H5119.5C16—C15—Cl2120.45 (18)
C5—C6—C1118.2 (2)C14—C15—Cl2120.63 (18)
C5—C6—C7120.6 (2)C15—C16—C17117.8 (2)
C1—C6—C7121.2 (2)C15—C16—H16121.1
N1—C7—C6121.5 (2)C17—C16—H16121.1
N1—C7—H7119.2C18—C17—C16120.0 (2)
C6—C7—H7119.2C18—C17—Cl3120.1 (2)
C13—C8—C9118.7 (2)C16—C17—Cl3119.89 (19)
C13—C8—N1116.3 (2)N2—C18—C17122.3 (2)
C9—C8—N1125.0 (2)N2—C18—H18118.8
C10—C9—C8120.3 (2)C17—C18—H18118.8
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.862.586 (3)147.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.862.586 (3)147
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