Literature DB >> 22219999

rac-syn-Diethyl 2-hy-droxy-4-oxo-1-phenyl-cyclo-hexane-1,2-dicarboxyl-ate.

Ya-Jun Wang1, Sheng-Liang Ni, Yue Meng.   

Abstract

The title compound, C(18)H(22)O(6), was obtained by the domino oxa-Michael-aldol (DOMA) reaction and has the cyclo-hexa-none ring in a chair conformation with intra-annular torsion angles in the range 49.9 (2)-58.9 (2)°. The two eth-oxy-carbonyl substituents on the cyclo-hexa-none ring adopt a syn configurations. In the crystal, the mol-ecules self-assemble through duplex inter-molecular hy-droxy-carbonyl O-H⋯O hydrogen bonds, giving centrosymmetric cyclic dimers [graph set R(2) (2)(12)] which inter-associate through weak C-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2011        PMID: 22219999      PMCID: PMC3247381          DOI: 10.1107/S1600536811042048

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to proline-catalysed Robinson annulation, see: Eder et al. (1971 ▶); Hajos & Parrish (1974 ▶). For the catalytic asymmetric formation of chiral building blocks, see: Bui & Barbas (2000 ▶); Tanaka et al. (2003 ▶). For the the DOMA reaction, see: Nising & Bräse (2008) ▶; Sefer et al. (2010 ▶) and for asymmetric C—C bond-forming reactions, see: Sibi & Chen (2001 ▶); Tian et al. (2002 ▶); Gothelf et al. (2002 ▶); Rueping et al. (2009 ▶). For the synthesis of the title compound, see: Floyd & Miller (1963 ▶). For related structures, see: Abell et al. (1988 ▶); Hernández-Ortega et al. (2001 ▶). For graph-set analysis, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C18H22O6 M = 334.36 Triclinic, a = 8.2069 (10) Å b = 9.9393 (16) Å c = 11.1420 (17) Å α = 87.408 (10)° β = 70.610 (7)° γ = 78.983 (9)° V = 841.3 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 153 K 0.45 × 0.36 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID CCD diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.957, T max = 0.990 8251 measured reflections 3053 independent reflections 2695 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.103 S = 1.07 3053 reflections 221 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.29 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811042048/zs2151sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042048/zs2151Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042048/zs2151Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H22O6Z = 2
Mr = 334.36F(000) = 356
Triclinic, P1Dx = 1.320 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 8.2069 (10) ÅCell parameters from 3233 reflections
b = 9.9393 (16) Åθ = 3.1–25.3°
c = 11.1420 (17) ŵ = 0.10 mm1
α = 87.408 (10)°T = 153 K
β = 70.610 (7)°Needle-like, colorless
γ = 78.983 (9)°0.45 × 0.36 × 0.10 mm
V = 841.3 (2) Å3
Rigaku R-AXIS RAPID CCD diffractometer3053 independent reflections
Radiation source: fine-focus sealed tube2695 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 7.31 pixels mm-1θmax = 25.4°, θmin = 3.2°
ω scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −11→11
Tmin = 0.957, Tmax = 0.990l = −13→13
8251 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0431P)2 + 0.4508P] where P = (Fo2 + 2Fc2)/3
3053 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.79576 (15)0.51980 (12)0.38078 (11)0.0255 (3)
O20.51399 (14)0.29561 (11)0.57801 (10)0.0192 (3)
H20.42110.35440.59180.029*
O30.41781 (18)0.26892 (13)0.85521 (12)0.0369 (3)
O40.45085 (18)0.48608 (12)0.82340 (12)0.0374 (4)
O50.83175 (15)0.31071 (12)0.79925 (11)0.0261 (3)
O61.03868 (14)0.14904 (11)0.67206 (10)0.0207 (3)
C10.8099 (2)0.43872 (16)0.46397 (15)0.0186 (3)
C20.6860 (2)0.45938 (15)0.59878 (15)0.0194 (3)
H2A0.58680.53510.60180.023*
H2B0.74860.48650.65330.023*
C30.61292 (19)0.32920 (15)0.65220 (14)0.0164 (3)
C40.76503 (19)0.20183 (15)0.63581 (14)0.0158 (3)
C50.8748 (2)0.18687 (15)0.49233 (14)0.0180 (3)
H5A0.97180.10680.47940.022*
H5B0.79920.16890.44400.022*
C60.9526 (2)0.31423 (16)0.43916 (15)0.0206 (3)
H6A1.03930.32680.47980.025*
H6B1.01430.30160.34640.025*
C70.4867 (2)0.35472 (16)0.79048 (15)0.0183 (3)
C80.3101 (3)0.5304 (2)0.94311 (18)0.0439 (5)
H8A0.35230.58490.99490.053*
H8B0.27370.44950.99230.053*
C90.1584 (3)0.6149 (3)0.9138 (2)0.0568 (7)
H9A0.19670.69220.86140.085*
H9B0.06590.64960.99320.085*
H9C0.11240.55860.86730.085*
C100.8800 (2)0.22881 (15)0.71235 (14)0.0168 (3)
C111.1587 (2)0.15987 (18)0.74163 (16)0.0234 (4)
H11A1.13620.25490.77440.028*
H11B1.28160.13830.68340.028*
C121.1337 (3)0.0626 (2)0.85057 (19)0.0361 (5)
H12A1.01600.09020.91280.054*
H12B1.22230.06460.89130.054*
H12C1.1465−0.03050.81880.054*
C130.69874 (19)0.06732 (15)0.68411 (14)0.0169 (3)
C140.6427 (2)−0.00903 (16)0.60868 (15)0.0198 (3)
H140.64230.02320.52720.024*
C150.5873 (2)−0.13174 (16)0.65096 (17)0.0246 (4)
H150.5487−0.18210.59850.030*
C160.5881 (2)−0.18106 (17)0.76895 (17)0.0265 (4)
H160.5515−0.26550.79720.032*
C170.6423 (2)−0.10641 (18)0.84515 (16)0.0272 (4)
H170.6421−0.13910.92670.033*
C180.6974 (2)0.01642 (17)0.80311 (15)0.0224 (4)
H180.73480.06660.85640.027*
U11U22U33U12U13U23
O10.0242 (6)0.0241 (6)0.0227 (6)0.0003 (5)−0.0040 (5)0.0062 (5)
O20.0176 (6)0.0195 (6)0.0212 (6)0.0007 (4)−0.0093 (5)−0.0015 (4)
O30.0416 (8)0.0258 (7)0.0282 (7)−0.0073 (6)0.0087 (6)0.0009 (5)
O40.0479 (8)0.0205 (6)0.0248 (7)−0.0024 (6)0.0120 (6)−0.0062 (5)
O50.0252 (6)0.0276 (6)0.0254 (6)0.0010 (5)−0.0105 (5)−0.0083 (5)
O60.0163 (6)0.0231 (6)0.0228 (6)−0.0004 (4)−0.0081 (5)−0.0006 (5)
C10.0192 (8)0.0168 (8)0.0207 (8)−0.0063 (6)−0.0063 (7)0.0025 (6)
C20.0197 (8)0.0146 (7)0.0210 (8)−0.0006 (6)−0.0044 (7)0.0002 (6)
C30.0163 (7)0.0161 (8)0.0172 (8)−0.0021 (6)−0.0066 (6)0.0001 (6)
C40.0159 (7)0.0142 (7)0.0162 (7)−0.0009 (6)−0.0047 (6)−0.0005 (6)
C50.0189 (8)0.0159 (8)0.0164 (8)−0.0003 (6)−0.0035 (6)−0.0003 (6)
C60.0172 (8)0.0212 (8)0.0195 (8)−0.0014 (6)−0.0024 (6)0.0025 (6)
C70.0169 (8)0.0177 (8)0.0197 (8)−0.0004 (6)−0.0068 (6)−0.0011 (6)
C80.0530 (13)0.0310 (10)0.0244 (10)0.0039 (9)0.0126 (9)−0.0065 (8)
C90.0353 (12)0.0859 (19)0.0386 (12)−0.0001 (12)−0.0013 (10)−0.0235 (12)
C100.0161 (8)0.0159 (7)0.0168 (8)−0.0034 (6)−0.0034 (6)0.0037 (6)
C110.0173 (8)0.0287 (9)0.0272 (9)−0.0050 (7)−0.0113 (7)0.0031 (7)
C120.0361 (11)0.0402 (11)0.0400 (11)−0.0121 (9)−0.0223 (9)0.0165 (9)
C130.0135 (7)0.0154 (7)0.0196 (8)−0.0007 (6)−0.0034 (6)−0.0007 (6)
C140.0187 (8)0.0189 (8)0.0208 (8)−0.0013 (6)−0.0065 (7)−0.0004 (6)
C150.0237 (9)0.0191 (8)0.0318 (9)−0.0042 (7)−0.0097 (7)−0.0033 (7)
C160.0236 (9)0.0181 (8)0.0354 (10)−0.0071 (7)−0.0053 (7)0.0040 (7)
C170.0306 (9)0.0263 (9)0.0239 (9)−0.0076 (7)−0.0076 (7)0.0071 (7)
C180.0248 (9)0.0212 (8)0.0224 (8)−0.0060 (7)−0.0086 (7)0.0021 (7)
O1—C11.2206 (19)C8—C91.486 (3)
O2—C31.4241 (18)C8—H8A0.9900
O2—H20.8400C8—H8B0.9900
O3—C71.194 (2)C9—H9A0.9800
O4—C71.3230 (19)C9—H9B0.9800
O4—C81.464 (2)C9—H9C0.9800
O5—C101.2043 (19)C11—C121.501 (2)
O6—C101.3326 (19)C11—H11A0.9900
O6—C111.4617 (19)C11—H11B0.9900
C1—C61.497 (2)C12—H12A0.9800
C1—C21.505 (2)C12—H12B0.9800
C2—C31.542 (2)C12—H12C0.9800
C2—H2A0.9900C13—C141.393 (2)
C2—H2B0.9900C13—C181.395 (2)
C3—C71.545 (2)C14—C151.391 (2)
C3—C41.568 (2)C14—H140.9500
C4—C101.530 (2)C15—C161.384 (2)
C4—C131.546 (2)C15—H150.9500
C4—C51.550 (2)C16—C171.380 (3)
C5—C61.533 (2)C16—H160.9500
C5—H5A0.9900C17—C181.390 (2)
C5—H5B0.9900C17—H170.9500
C6—H6A0.9900C18—H180.9500
C6—H6B0.9900
C3—O2—H2109.5O4—C8—H8B109.9
C7—O4—C8117.92 (14)C9—C8—H8B109.9
C10—O6—C11117.03 (12)H8A—C8—H8B108.3
O1—C1—C6122.31 (14)C8—C9—H9A109.5
O1—C1—C2121.82 (14)C8—C9—H9B109.5
C6—C1—C2115.86 (13)H9A—C9—H9B109.5
C1—C2—C3112.37 (13)C8—C9—H9C109.5
C1—C2—H2A109.1H9A—C9—H9C109.5
C3—C2—H2A109.1H9B—C9—H9C109.5
C1—C2—H2B109.1O5—C10—O6124.40 (14)
C3—C2—H2B109.1O5—C10—C4124.04 (14)
H2A—C2—H2B107.9O6—C10—C4111.56 (13)
O2—C3—C2108.84 (12)O6—C11—C12110.41 (14)
O2—C3—C7107.31 (12)O6—C11—H11A109.6
C2—C3—C7110.70 (12)C12—C11—H11A109.6
O2—C3—C4104.69 (11)O6—C11—H11B109.6
C2—C3—C4111.26 (12)C12—C11—H11B109.6
C7—C3—C4113.68 (12)H11A—C11—H11B108.1
C10—C4—C13107.52 (12)C11—C12—H12A109.5
C10—C4—C5109.82 (12)C11—C12—H12B109.5
C13—C4—C5110.10 (12)H12A—C12—H12B109.5
C10—C4—C3108.55 (12)C11—C12—H12C109.5
C13—C4—C3113.42 (12)H12A—C12—H12C109.5
C5—C4—C3107.40 (12)H12B—C12—H12C109.5
C6—C5—C4113.04 (12)C14—C13—C18117.75 (14)
C6—C5—H5A109.0C14—C13—C4121.03 (14)
C4—C5—H5A109.0C18—C13—C4121.20 (14)
C6—C5—H5B109.0C15—C14—C13120.96 (15)
C4—C5—H5B109.0C15—C14—H14119.5
H5A—C5—H5B107.8C13—C14—H14119.5
C1—C6—C5110.24 (12)C16—C15—C14120.46 (16)
C1—C6—H6A109.6C16—C15—H15119.8
C5—C6—H6A109.6C14—C15—H15119.8
C1—C6—H6B109.6C17—C16—C15119.34 (16)
C5—C6—H6B109.6C17—C16—H16120.3
H6A—C6—H6B108.1C15—C16—H16120.3
O3—C7—O4124.13 (15)C16—C17—C18120.26 (16)
O3—C7—C3124.09 (14)C16—C17—H17119.9
O4—C7—C3111.44 (13)C18—C17—H17119.9
O4—C8—C9108.77 (17)C17—C18—C13121.22 (15)
O4—C8—H8A109.9C17—C18—H18119.4
C9—C8—H8A109.9C13—C18—H18119.4
O1—C1—C2—C3131.17 (15)C2—C3—C7—O49.43 (18)
C6—C1—C2—C3−49.84 (18)C4—C3—C7—O4135.52 (14)
C1—C2—C3—O2−62.33 (16)C7—O4—C8—C9−110.0 (2)
C1—C2—C3—C7179.96 (13)C11—O6—C10—O52.0 (2)
C1—C2—C3—C452.53 (17)C11—O6—C10—C4−177.03 (12)
O2—C3—C4—C10179.76 (11)C13—C4—C10—O5−101.99 (17)
C2—C3—C4—C1062.36 (16)C5—C4—C10—O5138.22 (15)
C7—C3—C4—C10−63.44 (16)C3—C4—C10—O521.1 (2)
O2—C3—C4—C13−60.81 (15)C13—C4—C10—O677.06 (15)
C2—C3—C4—C13−178.21 (12)C5—C4—C10—O6−42.73 (16)
C7—C3—C4—C1355.99 (17)C3—C4—C10—O6−159.87 (12)
O2—C3—C4—C561.07 (14)C10—O6—C11—C1288.62 (17)
C2—C3—C4—C5−56.33 (16)C10—C4—C13—C14−158.13 (14)
C7—C3—C4—C5177.88 (12)C5—C4—C13—C14−38.52 (19)
C10—C4—C5—C6−59.02 (16)C3—C4—C13—C1481.85 (17)
C13—C4—C5—C6−177.22 (12)C10—C4—C13—C1820.14 (19)
C3—C4—C5—C658.84 (16)C5—C4—C13—C18139.75 (15)
O1—C1—C6—C5−130.89 (16)C3—C4—C13—C18−99.88 (17)
C2—C1—C6—C550.13 (18)C18—C13—C14—C150.0 (2)
C4—C5—C6—C1−55.46 (17)C4—C13—C14—C15178.36 (14)
C8—O4—C7—O3−4.0 (3)C13—C14—C15—C16−0.5 (2)
C8—O4—C7—C3169.59 (16)C14—C15—C16—C170.8 (3)
O2—C3—C7—O364.36 (19)C15—C16—C17—C18−0.7 (3)
C2—C3—C7—O3−176.99 (15)C16—C17—C18—C130.2 (3)
C4—C3—C7—O3−50.9 (2)C14—C13—C18—C170.1 (2)
O2—C3—C7—O4−109.22 (14)C4—C13—C18—C17−178.23 (15)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.841.912.7491 (18)177
C15—H15···O2ii0.952.553.486 (2)169
C8—H8A···O5iii0.992.443.095 (2)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.841.912.7491 (18)177
C15—H15⋯O2ii0.952.553.486 (2)169
C8—H8A⋯O5iii0.992.443.095 (2)124

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  Enantioselective tandem radical reactions: vicinal difunctionalization in acyclic systems with control over relative and absolute stereochemistry.

Authors:  M P Sibi; J Chen
Journal:  J Am Chem Soc       Date:  2001-09-26       Impact factor: 15.419

2.  Fluorescent detection of carbon-carbon bond formation.

Authors:  Fujie Tanaka; Rajeswari Thayumanavan; Carlos F Barbas
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Asymmetric organocatalytic domino Michael/aldol reactions: enantioselective synthesis of chiral cycloheptanones, tetrahydrochromenones, and polyfunctionalized bicyclo[3.2.1]octanes.

Authors:  Magnus Rueping; Alexander Kuenkel; Francisco Tato; Jan W Bats
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

Review 5.  The oxa-Michael reaction: from recent developments to applications in natural product synthesis.

Authors:  Carl F Nising; Stefan Bräse
Journal:  Chem Soc Rev       Date:  2008-04-21       Impact factor: 54.564

6.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

7.  4-Ethoxycarbonyl-3-hydroxy-3-phenylcyclohexanone.

Authors:  S Hernández-Ortega; F Jiménez-Cruz; H Ríos-Olivares; M Rubio-Arroyo
Journal:  Acta Crystallogr C       Date:  2001-04       Impact factor: 1.172

  7 in total

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