Literature DB >> 22219988

2-[N-(3-Amino-4-nitro-phen-yl)carboximido-yl]phenol.

Gholam Hossein Shahverdizadeh, Seik Weng Ng, Edward R T Tiekink, Babak Mirtamizdoust.   

Abstract

The title compound, C(13)H(11)N(3)O(3), is essentially planar (r.m.s. for the 19 non-H atoms = 0.031 Å), a conformation stabilized in part by intra-molecular O-H⋯N and N-H⋯O hydrogen bonds. The configuration about the imine bond [1.2919 (12) Å] is E. The presence of N-H⋯O(nitro) hydrogen bonds leads to the formation of supra-molecular tapes in the crystal structure. These are connected into layers by π-π inter-actions [centroid-centroid distance = 3.6046 (6) Å] occurring between the hy-droxy- and amino-substituted benzene rings.

Entities:  

Year:  2011        PMID: 22219988      PMCID: PMC3247370          DOI: 10.1107/S160053681104181X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related work on Schiff bases, see: Prasath et al. (2010 ▶); Shahverdizadeh & Tiekink (2011 ▶). For specialized crystallization techniques, see: Harrowfield et al. (1996 ▶).

Experimental

Crystal data

C13H11N3O3 M = 257.25 Triclinic, a = 7.0961 (3) Å b = 7.5168 (4) Å c = 12.1627 (6) Å α = 100.067 (4)° β = 94.751 (4)° γ = 115.011 (5)° V = 569.87 (5) Å3 Z = 2 Cu Kα radiation μ = 0.92 mm−1 T = 100 K 0.25 × 0.20 × 0.15 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.748, T max = 1.000 3654 measured reflections 2231 independent reflections 2105 reflections with I > 2σ(I) R int = 0.008

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.113 S = 1.07 2231 reflections 184 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104181X/hg5110sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104181X/hg5110Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3O3Z = 2
Mr = 257.25F(000) = 268
Triclinic, P1Dx = 1.499 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 7.0961 (3) ÅCell parameters from 2525 reflections
b = 7.5168 (4) Åθ = 3.8–74.1°
c = 12.1627 (6) ŵ = 0.92 mm1
α = 100.067 (4)°T = 100 K
β = 94.751 (4)°Prism, orange
γ = 115.011 (5)°0.25 × 0.20 × 0.15 mm
V = 569.87 (5) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector2231 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2105 reflections with I > 2σ(I)
MirrorRint = 0.008
Detector resolution: 10.4041 pixels mm-1θmax = 74.3°, θmin = 3.8°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −9→9
Tmin = 0.748, Tmax = 1.000l = −13→15
3654 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0753P)2 + 0.0839P] where P = (Fo2 + 2Fc2)/3
2231 reflections(Δ/σ)max < 0.001
184 parametersΔρmax = 0.28 e Å3
3 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.40452 (11)0.27962 (11)0.59127 (6)0.0227 (2)
H1o0.495 (2)0.285 (3)0.5475 (13)0.062 (5)*
O21.09653 (11)0.36753 (12)0.05261 (6)0.0246 (2)
O31.31365 (10)0.29051 (11)0.14605 (6)0.0233 (2)
N10.71614 (12)0.25239 (11)0.50498 (7)0.0158 (2)
N20.78293 (13)0.40302 (13)0.14327 (7)0.0191 (2)
H1n0.840 (2)0.420 (2)0.0816 (9)0.039 (4)*
H2n0.6610 (15)0.4021 (18)0.1447 (10)0.026 (3)*
N31.15808 (12)0.32599 (12)0.13890 (7)0.0172 (2)
C10.47038 (15)0.22517 (14)0.68163 (8)0.0168 (2)
C20.36032 (15)0.21048 (14)0.77211 (8)0.0197 (2)
H20.24080.23720.76900.024*
C30.42483 (16)0.15713 (14)0.86643 (8)0.0209 (2)
H30.35000.14910.92810.025*
C40.59855 (15)0.11503 (14)0.87207 (8)0.0202 (2)
H40.64050.07630.93660.024*
C50.70904 (15)0.13020 (14)0.78289 (8)0.0182 (2)
H50.82830.10310.78700.022*
C60.64775 (14)0.18514 (13)0.68626 (8)0.0155 (2)
C70.76768 (14)0.20111 (13)0.59454 (8)0.0161 (2)
H70.88640.17330.60040.019*
C80.83502 (14)0.27202 (13)0.41602 (8)0.0146 (2)
C90.76291 (14)0.32620 (13)0.32488 (8)0.0151 (2)
H90.64120.34910.32650.018*
C100.86365 (14)0.34913 (13)0.22862 (8)0.0150 (2)
C111.04545 (14)0.31485 (13)0.23212 (8)0.0150 (2)
C121.12150 (14)0.26527 (14)0.32711 (8)0.0168 (2)
H121.24630.24720.32810.020*
C131.01929 (15)0.24257 (14)0.41788 (8)0.0172 (2)
H131.07110.20760.48120.021*
U11U22U33U12U13U23
O10.0209 (4)0.0344 (4)0.0206 (4)0.0173 (3)0.0055 (3)0.0120 (3)
O20.0274 (4)0.0366 (4)0.0191 (4)0.0190 (3)0.0095 (3)0.0143 (3)
O30.0206 (4)0.0328 (4)0.0259 (4)0.0180 (3)0.0105 (3)0.0104 (3)
N10.0162 (4)0.0170 (4)0.0136 (4)0.0067 (3)0.0031 (3)0.0038 (3)
N20.0185 (4)0.0274 (4)0.0183 (4)0.0143 (3)0.0067 (3)0.0102 (3)
N30.0166 (4)0.0173 (4)0.0184 (4)0.0077 (3)0.0051 (3)0.0047 (3)
C10.0167 (5)0.0163 (4)0.0164 (5)0.0068 (4)0.0018 (4)0.0036 (3)
C20.0183 (5)0.0190 (4)0.0219 (5)0.0088 (4)0.0054 (4)0.0028 (4)
C30.0241 (5)0.0193 (5)0.0166 (5)0.0066 (4)0.0082 (4)0.0032 (4)
C40.0240 (5)0.0201 (4)0.0146 (5)0.0079 (4)0.0023 (4)0.0052 (3)
C50.0182 (5)0.0179 (5)0.0181 (5)0.0076 (4)0.0023 (4)0.0048 (3)
C60.0157 (4)0.0141 (4)0.0149 (5)0.0054 (3)0.0019 (3)0.0027 (3)
C70.0153 (5)0.0160 (4)0.0170 (5)0.0071 (4)0.0031 (4)0.0036 (4)
C80.0135 (4)0.0140 (4)0.0146 (5)0.0049 (3)0.0030 (3)0.0021 (3)
C90.0140 (4)0.0157 (4)0.0163 (5)0.0073 (3)0.0030 (4)0.0033 (4)
C100.0153 (4)0.0132 (4)0.0153 (5)0.0055 (3)0.0025 (3)0.0031 (3)
C110.0148 (4)0.0153 (4)0.0151 (5)0.0063 (4)0.0046 (4)0.0039 (3)
C120.0138 (4)0.0179 (4)0.0195 (5)0.0079 (4)0.0025 (3)0.0038 (3)
C130.0171 (4)0.0207 (5)0.0152 (5)0.0094 (4)0.0019 (3)0.0056 (3)
O1—C11.3519 (11)C4—C51.3830 (13)
O1—H1o0.858 (9)C4—H40.9500
O2—N31.2424 (10)C5—C61.4064 (13)
O3—N31.2403 (10)C5—H50.9500
N1—C71.2919 (12)C6—C71.4494 (13)
N1—C81.4163 (12)C7—H70.9500
N2—C101.3471 (12)C8—C91.3772 (13)
N2—H1n0.885 (9)C8—C131.4145 (13)
N2—H2n0.864 (8)C9—C101.4200 (12)
N3—C111.4346 (12)C9—H90.9500
C1—C21.3947 (14)C10—C111.4172 (13)
C1—C61.4115 (14)C11—C121.4079 (13)
C2—C31.3840 (14)C12—C131.3668 (13)
C2—H20.9500C12—H120.9500
C3—C41.3957 (15)C13—H130.9500
C3—H30.9500
C1—O1—H1o104.2 (12)C5—C6—C7119.76 (9)
C7—N1—C8121.52 (8)C1—C6—C7121.50 (9)
C10—N2—H1n122.2 (10)N1—C7—C6121.24 (9)
C10—N2—H2n117.9 (8)N1—C7—H7119.4
H1n—N2—H2n119.2 (12)C6—C7—H7119.4
O3—N3—O2121.55 (8)C9—C8—C13120.23 (9)
O3—N3—C11118.76 (8)C9—C8—N1115.89 (8)
O2—N3—C11119.68 (8)C13—C8—N1123.87 (8)
O1—C1—C2118.68 (9)C8—C9—C10122.45 (8)
O1—C1—C6121.45 (9)C8—C9—H9118.8
C2—C1—C6119.87 (9)C10—C9—H9118.8
C3—C2—C1120.17 (9)N2—C10—C11125.47 (8)
C3—C2—H2119.9N2—C10—C9118.58 (8)
C1—C2—H2119.9C11—C10—C9115.95 (8)
C2—C3—C4120.79 (9)C12—C11—C10121.18 (9)
C2—C3—H3119.6C12—C11—N3117.08 (8)
C4—C3—H3119.6C10—C11—N3121.73 (8)
C5—C4—C3119.36 (9)C13—C12—C11121.27 (9)
C5—C4—H4120.3C13—C12—H12119.4
C3—C4—H4120.3C11—C12—H12119.4
C4—C5—C6121.07 (9)C12—C13—C8118.89 (9)
C4—C5—H5119.5C12—C13—H13120.6
C6—C5—H5119.5C8—C13—H13120.6
C5—C6—C1118.73 (9)
O1—C1—C2—C3−179.34 (8)N1—C8—C9—C10−179.14 (7)
C6—C1—C2—C30.12 (15)C8—C9—C10—N2−179.84 (8)
C1—C2—C3—C4−0.76 (15)C8—C9—C10—C11−0.63 (14)
C2—C3—C4—C51.05 (15)N2—C10—C11—C12177.90 (8)
C3—C4—C5—C6−0.70 (15)C9—C10—C11—C12−1.25 (13)
C4—C5—C6—C10.07 (14)N2—C10—C11—N3−3.06 (15)
C4—C5—C6—C7179.57 (8)C9—C10—C11—N3177.79 (7)
O1—C1—C6—C5179.66 (7)O3—N3—C11—C120.51 (13)
C2—C1—C6—C50.22 (14)O2—N3—C11—C12179.41 (7)
O1—C1—C6—C70.17 (15)O3—N3—C11—C10−178.57 (8)
C2—C1—C6—C7−179.27 (8)O2—N3—C11—C100.32 (13)
C8—N1—C7—C6178.78 (7)C10—C11—C12—C131.95 (14)
C5—C6—C7—N1−179.59 (7)N3—C11—C12—C13−177.14 (8)
C1—C6—C7—N1−0.10 (15)C11—C12—C13—C8−0.71 (14)
C7—N1—C8—C9179.58 (7)C9—C8—C13—C12−1.16 (14)
C7—N1—C8—C13−1.46 (15)N1—C8—C13—C12179.92 (8)
C13—C8—C9—C101.85 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N10.86 (1)1.79 (1)2.5933 (10)154.(2)
N2—H1n···O20.89 (1)2.06 (1)2.6542 (11)123.(1)
N2—H1n···O2i0.89 (1)2.42 (1)3.1479 (11)140.(1)
N2—H2n···O3ii0.86 (1)2.25 (1)3.0746 (10)161.(1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N10.86 (1)1.79 (1)2.5933 (10)154 (2)
N2—H1n⋯O20.89 (1)2.06 (1)2.6542 (11)123 (1)
N2—H1n⋯O2i0.89 (1)2.42 (1)3.1479 (11)140 (1)
N2—H2n⋯O3ii0.86 (1)2.25 (1)3.0746 (10)161 (1)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N,N'-Bis[(E)-(2-chloro-8-methyl-quinolin-3-yl)methyl-idene]ethane-1,2-diamine.

Authors:  R Prasath; P Bhavana; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-10

3.  2-[N-(4-{4-[(E)-(2-Hydroxybenzyl-idene)amino]phenoxy}phenyl)carbox-imidoyl]phenol.

Authors:  Gholam Hossein Shahverdizadeh; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05
  3 in total

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