| Literature DB >> 22219988 |
Gholam Hossein Shahverdizadeh, Seik Weng Ng, Edward R T Tiekink, Babak Mirtamizdoust.
Abstract
The title compound, C(13)H(11)N(3)O(3), is essentially planar (r.m.s. for the 19 non-H atoms = 0.031 Å), a conformation stabilized in part by intra-molecular O-H⋯N and N-H⋯O hydrogen bonds. The configuration about the imine bond [1.2919 (12) Å] is E. The presence of N-H⋯O(nitro) hydrogen bonds leads to the formation of supra-molecular tapes in the crystal structure. These are connected into layers by π-π inter-actions [centroid-centroid distance = 3.6046 (6) Å] occurring between the hy-droxy- and amino-substituted benzene rings.Entities:
Year: 2011 PMID: 22219988 PMCID: PMC3247370 DOI: 10.1107/S160053681104181X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H11N3O3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Cu |
| Cell parameters from 2525 reflections | |
| θ = 3.8–74.1° | |
| µ = 0.92 mm−1 | |
| α = 100.067 (4)° | |
| β = 94.751 (4)° | Prism, orange |
| γ = 115.011 (5)° | 0.25 × 0.20 × 0.15 mm |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 2231 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 2105 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 74.3°, θmin = 3.8° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 3654 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2231 reflections | (Δ/σ)max < 0.001 |
| 184 parameters | Δρmax = 0.28 e Å−3 |
| 3 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.40452 (11) | 0.27962 (11) | 0.59127 (6) | 0.0227 (2) | |
| H1o | 0.495 (2) | 0.285 (3) | 0.5475 (13) | 0.062 (5)* | |
| O2 | 1.09653 (11) | 0.36753 (12) | 0.05261 (6) | 0.0246 (2) | |
| O3 | 1.31365 (10) | 0.29051 (11) | 0.14605 (6) | 0.0233 (2) | |
| N1 | 0.71614 (12) | 0.25239 (11) | 0.50498 (7) | 0.0158 (2) | |
| N2 | 0.78293 (13) | 0.40302 (13) | 0.14327 (7) | 0.0191 (2) | |
| H1n | 0.840 (2) | 0.420 (2) | 0.0816 (9) | 0.039 (4)* | |
| H2n | 0.6610 (15) | 0.4021 (18) | 0.1447 (10) | 0.026 (3)* | |
| N3 | 1.15808 (12) | 0.32599 (12) | 0.13890 (7) | 0.0172 (2) | |
| C1 | 0.47038 (15) | 0.22517 (14) | 0.68163 (8) | 0.0168 (2) | |
| C2 | 0.36032 (15) | 0.21048 (14) | 0.77211 (8) | 0.0197 (2) | |
| H2 | 0.2408 | 0.2372 | 0.7690 | 0.024* | |
| C3 | 0.42483 (16) | 0.15713 (14) | 0.86643 (8) | 0.0209 (2) | |
| H3 | 0.3500 | 0.1491 | 0.9281 | 0.025* | |
| C4 | 0.59855 (15) | 0.11503 (14) | 0.87207 (8) | 0.0202 (2) | |
| H4 | 0.6405 | 0.0763 | 0.9366 | 0.024* | |
| C5 | 0.70904 (15) | 0.13020 (14) | 0.78289 (8) | 0.0182 (2) | |
| H5 | 0.8283 | 0.1031 | 0.7870 | 0.022* | |
| C6 | 0.64775 (14) | 0.18514 (13) | 0.68626 (8) | 0.0155 (2) | |
| C7 | 0.76768 (14) | 0.20111 (13) | 0.59454 (8) | 0.0161 (2) | |
| H7 | 0.8864 | 0.1733 | 0.6004 | 0.019* | |
| C8 | 0.83502 (14) | 0.27202 (13) | 0.41602 (8) | 0.0146 (2) | |
| C9 | 0.76291 (14) | 0.32620 (13) | 0.32488 (8) | 0.0151 (2) | |
| H9 | 0.6412 | 0.3491 | 0.3265 | 0.018* | |
| C10 | 0.86365 (14) | 0.34913 (13) | 0.22862 (8) | 0.0150 (2) | |
| C11 | 1.04545 (14) | 0.31485 (13) | 0.23212 (8) | 0.0150 (2) | |
| C12 | 1.12150 (14) | 0.26527 (14) | 0.32711 (8) | 0.0168 (2) | |
| H12 | 1.2463 | 0.2472 | 0.3281 | 0.020* | |
| C13 | 1.01929 (15) | 0.24257 (14) | 0.41788 (8) | 0.0172 (2) | |
| H13 | 1.0711 | 0.2076 | 0.4812 | 0.021* |
| O1 | 0.0209 (4) | 0.0344 (4) | 0.0206 (4) | 0.0173 (3) | 0.0055 (3) | 0.0120 (3) |
| O2 | 0.0274 (4) | 0.0366 (4) | 0.0191 (4) | 0.0190 (3) | 0.0095 (3) | 0.0143 (3) |
| O3 | 0.0206 (4) | 0.0328 (4) | 0.0259 (4) | 0.0180 (3) | 0.0105 (3) | 0.0104 (3) |
| N1 | 0.0162 (4) | 0.0170 (4) | 0.0136 (4) | 0.0067 (3) | 0.0031 (3) | 0.0038 (3) |
| N2 | 0.0185 (4) | 0.0274 (4) | 0.0183 (4) | 0.0143 (3) | 0.0067 (3) | 0.0102 (3) |
| N3 | 0.0166 (4) | 0.0173 (4) | 0.0184 (4) | 0.0077 (3) | 0.0051 (3) | 0.0047 (3) |
| C1 | 0.0167 (5) | 0.0163 (4) | 0.0164 (5) | 0.0068 (4) | 0.0018 (4) | 0.0036 (3) |
| C2 | 0.0183 (5) | 0.0190 (4) | 0.0219 (5) | 0.0088 (4) | 0.0054 (4) | 0.0028 (4) |
| C3 | 0.0241 (5) | 0.0193 (5) | 0.0166 (5) | 0.0066 (4) | 0.0082 (4) | 0.0032 (4) |
| C4 | 0.0240 (5) | 0.0201 (4) | 0.0146 (5) | 0.0079 (4) | 0.0023 (4) | 0.0052 (3) |
| C5 | 0.0182 (5) | 0.0179 (5) | 0.0181 (5) | 0.0076 (4) | 0.0023 (4) | 0.0048 (3) |
| C6 | 0.0157 (4) | 0.0141 (4) | 0.0149 (5) | 0.0054 (3) | 0.0019 (3) | 0.0027 (3) |
| C7 | 0.0153 (5) | 0.0160 (4) | 0.0170 (5) | 0.0071 (4) | 0.0031 (4) | 0.0036 (4) |
| C8 | 0.0135 (4) | 0.0140 (4) | 0.0146 (5) | 0.0049 (3) | 0.0030 (3) | 0.0021 (3) |
| C9 | 0.0140 (4) | 0.0157 (4) | 0.0163 (5) | 0.0073 (3) | 0.0030 (4) | 0.0033 (4) |
| C10 | 0.0153 (4) | 0.0132 (4) | 0.0153 (5) | 0.0055 (3) | 0.0025 (3) | 0.0031 (3) |
| C11 | 0.0148 (4) | 0.0153 (4) | 0.0151 (5) | 0.0063 (4) | 0.0046 (4) | 0.0039 (3) |
| C12 | 0.0138 (4) | 0.0179 (4) | 0.0195 (5) | 0.0079 (4) | 0.0025 (3) | 0.0038 (3) |
| C13 | 0.0171 (4) | 0.0207 (5) | 0.0152 (5) | 0.0094 (4) | 0.0019 (3) | 0.0056 (3) |
| O1—C1 | 1.3519 (11) | C4—C5 | 1.3830 (13) |
| O1—H1o | 0.858 (9) | C4—H4 | 0.9500 |
| O2—N3 | 1.2424 (10) | C5—C6 | 1.4064 (13) |
| O3—N3 | 1.2403 (10) | C5—H5 | 0.9500 |
| N1—C7 | 1.2919 (12) | C6—C7 | 1.4494 (13) |
| N1—C8 | 1.4163 (12) | C7—H7 | 0.9500 |
| N2—C10 | 1.3471 (12) | C8—C9 | 1.3772 (13) |
| N2—H1n | 0.885 (9) | C8—C13 | 1.4145 (13) |
| N2—H2n | 0.864 (8) | C9—C10 | 1.4200 (12) |
| N3—C11 | 1.4346 (12) | C9—H9 | 0.9500 |
| C1—C2 | 1.3947 (14) | C10—C11 | 1.4172 (13) |
| C1—C6 | 1.4115 (14) | C11—C12 | 1.4079 (13) |
| C2—C3 | 1.3840 (14) | C12—C13 | 1.3668 (13) |
| C2—H2 | 0.9500 | C12—H12 | 0.9500 |
| C3—C4 | 1.3957 (15) | C13—H13 | 0.9500 |
| C3—H3 | 0.9500 | ||
| C1—O1—H1o | 104.2 (12) | C5—C6—C7 | 119.76 (9) |
| C7—N1—C8 | 121.52 (8) | C1—C6—C7 | 121.50 (9) |
| C10—N2—H1n | 122.2 (10) | N1—C7—C6 | 121.24 (9) |
| C10—N2—H2n | 117.9 (8) | N1—C7—H7 | 119.4 |
| H1n—N2—H2n | 119.2 (12) | C6—C7—H7 | 119.4 |
| O3—N3—O2 | 121.55 (8) | C9—C8—C13 | 120.23 (9) |
| O3—N3—C11 | 118.76 (8) | C9—C8—N1 | 115.89 (8) |
| O2—N3—C11 | 119.68 (8) | C13—C8—N1 | 123.87 (8) |
| O1—C1—C2 | 118.68 (9) | C8—C9—C10 | 122.45 (8) |
| O1—C1—C6 | 121.45 (9) | C8—C9—H9 | 118.8 |
| C2—C1—C6 | 119.87 (9) | C10—C9—H9 | 118.8 |
| C3—C2—C1 | 120.17 (9) | N2—C10—C11 | 125.47 (8) |
| C3—C2—H2 | 119.9 | N2—C10—C9 | 118.58 (8) |
| C1—C2—H2 | 119.9 | C11—C10—C9 | 115.95 (8) |
| C2—C3—C4 | 120.79 (9) | C12—C11—C10 | 121.18 (9) |
| C2—C3—H3 | 119.6 | C12—C11—N3 | 117.08 (8) |
| C4—C3—H3 | 119.6 | C10—C11—N3 | 121.73 (8) |
| C5—C4—C3 | 119.36 (9) | C13—C12—C11 | 121.27 (9) |
| C5—C4—H4 | 120.3 | C13—C12—H12 | 119.4 |
| C3—C4—H4 | 120.3 | C11—C12—H12 | 119.4 |
| C4—C5—C6 | 121.07 (9) | C12—C13—C8 | 118.89 (9) |
| C4—C5—H5 | 119.5 | C12—C13—H13 | 120.6 |
| C6—C5—H5 | 119.5 | C8—C13—H13 | 120.6 |
| C5—C6—C1 | 118.73 (9) | ||
| O1—C1—C2—C3 | −179.34 (8) | N1—C8—C9—C10 | −179.14 (7) |
| C6—C1—C2—C3 | 0.12 (15) | C8—C9—C10—N2 | −179.84 (8) |
| C1—C2—C3—C4 | −0.76 (15) | C8—C9—C10—C11 | −0.63 (14) |
| C2—C3—C4—C5 | 1.05 (15) | N2—C10—C11—C12 | 177.90 (8) |
| C3—C4—C5—C6 | −0.70 (15) | C9—C10—C11—C12 | −1.25 (13) |
| C4—C5—C6—C1 | 0.07 (14) | N2—C10—C11—N3 | −3.06 (15) |
| C4—C5—C6—C7 | 179.57 (8) | C9—C10—C11—N3 | 177.79 (7) |
| O1—C1—C6—C5 | 179.66 (7) | O3—N3—C11—C12 | 0.51 (13) |
| C2—C1—C6—C5 | 0.22 (14) | O2—N3—C11—C12 | 179.41 (7) |
| O1—C1—C6—C7 | 0.17 (15) | O3—N3—C11—C10 | −178.57 (8) |
| C2—C1—C6—C7 | −179.27 (8) | O2—N3—C11—C10 | 0.32 (13) |
| C8—N1—C7—C6 | 178.78 (7) | C10—C11—C12—C13 | 1.95 (14) |
| C5—C6—C7—N1 | −179.59 (7) | N3—C11—C12—C13 | −177.14 (8) |
| C1—C6—C7—N1 | −0.10 (15) | C11—C12—C13—C8 | −0.71 (14) |
| C7—N1—C8—C9 | 179.58 (7) | C9—C8—C13—C12 | −1.16 (14) |
| C7—N1—C8—C13 | −1.46 (15) | N1—C8—C13—C12 | 179.92 (8) |
| C13—C8—C9—C10 | 1.85 (14) |
| H··· | ||||
| O1—H1o···N1 | 0.86 (1) | 1.79 (1) | 2.5933 (10) | 154.(2) |
| N2—H1n···O2 | 0.89 (1) | 2.06 (1) | 2.6542 (11) | 123.(1) |
| N2—H1n···O2i | 0.89 (1) | 2.42 (1) | 3.1479 (11) | 140.(1) |
| N2—H2n···O3ii | 0.86 (1) | 2.25 (1) | 3.0746 (10) | 161.(1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.86 (1) | 1.79 (1) | 2.5933 (10) | 154 (2) |
| N2—H1 | 0.89 (1) | 2.06 (1) | 2.6542 (11) | 123 (1) |
| N2—H1 | 0.89 (1) | 2.42 (1) | 3.1479 (11) | 140 (1) |
| N2—H2 | 0.86 (1) | 2.25 (1) | 3.0746 (10) | 161 (1) |
Symmetry codes: (i) ; (ii) .