Literature DB >> 22219977

1,2-Dimeth-oxy-4-methyl-3-[(S)-p-tolyl-sulfin-yl]benzene.

Virginia M Mastranzo1, José Luis Olivares, Rubén Sánchez-Obregón, Francisco Yuste, Rubén A Toscano.   

Abstract

In the title compound, C(16)H(18)O(3)S, the dihedral angle between the benzene rings is 75.48 (8)°. The absolute configuration at the stereogenic S-atom center was determined as S. The crystal structure is stabilized by inter-molecular C-H⋯O contacts.

Entities:  

Year:  2011        PMID: 22219977      PMCID: PMC3247359          DOI: 10.1107/S1600536811041420

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related sulfoxides, see: Brondel et al. (2010 ▶); Fuller et al. (2009 ▶). The title compound was prepared as a starting material for the synthesis of the tetra­hydro­protoberberine alkaloids (S)-(−)-tetra­hydro­palmatine and (S)-(−)-canadine following a synthetic strategy similar to that used for the synthesis of (S)-(−)-xylopinine (Mastranzo et al., 2011 ▶).

Experimental

Crystal data

C16H18O3S M = 290.36 Orthorhombic, a = 7.4170 (6) Å b = 8.5406 (7) Å c = 24.0980 (19) Å V = 1526.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 298 K 0.38 × 0.37 × 0.31 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.922, T max = 0.942 20418 measured reflections 3645 independent reflections 3380 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.099 S = 1.06 3645 reflections 185 parameters H-atom parameters not refined Δρmax = 0.25 e Å−3 Δρmin = −0.13 e Å−3 Absolute structure: Flack (1983 ▶), 1534 Friedel pairs Flack parameter: 0.01 (6) Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811041420/bt5660sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041420/bt5660Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041420/bt5660Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536811041420/bt5660Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18O3SDx = 1.263 Mg m3
Mr = 290.36Melting point: 400 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 9922 reflections
a = 7.4170 (6) Åθ = 2.5–27.6°
b = 8.5406 (7) ŵ = 0.22 mm1
c = 24.0980 (19) ÅT = 298 K
V = 1526.5 (2) Å3Prism, colourless
Z = 40.38 × 0.37 × 0.31 mm
F(000) = 616
Bruker SMART APEX CCD diffractometer3645 independent reflections
Radiation source: fine-focus sealed tube3380 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 0.661 pixels mm-1θmax = 27.9°, θmin = 1.7°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)k = −11→11
Tmin = 0.922, Tmax = 0.942l = −31→31
20418 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters not refined
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0693P)2 + 0.0141P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3645 reflectionsΔρmax = 0.25 e Å3
185 parametersΔρmin = −0.13 e Å3
0 restraintsAbsolute structure: Flack (1983), 1534 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.57970 (5)0.27901 (5)0.149352 (15)0.04842 (12)
O10.77239 (19)0.07949 (18)0.33551 (5)0.0664 (4)
O20.57075 (15)0.25318 (11)0.26763 (4)0.0500 (3)
O30.6876 (2)0.39213 (16)0.11616 (5)0.0671 (4)
C10.8129 (2)0.0711 (2)0.28050 (7)0.0527 (4)
C20.7012 (2)0.15921 (17)0.24538 (6)0.0447 (3)
C30.73064 (19)0.15714 (18)0.18847 (6)0.0451 (3)
C40.8742 (2)0.0726 (2)0.16503 (7)0.0544 (4)
C50.9821 (2)−0.0114 (2)0.20084 (9)0.0621 (4)
H51.0779−0.06840.18630.074*
C60.9531 (2)−0.0143 (2)0.25777 (8)0.0621 (4)
H61.0278−0.07360.28060.074*
C70.9144 (3)0.0710 (3)0.10365 (8)0.0695 (5)
H7A1.03910.04580.09790.104*
H7B0.88920.17230.08820.104*
H7C0.8403−0.00620.08580.104*
C80.8723 (4)−0.0178 (4)0.37212 (9)0.0968 (8)
H8A0.8235−0.00950.40890.145*
H8B0.99620.01490.37240.145*
H8C0.8649−0.12450.35980.145*
C90.4070 (3)0.1761 (2)0.28212 (10)0.0709 (5)
H9A0.31630.25280.29030.106*
H9B0.42670.11140.31410.106*
H9C0.36790.11220.25170.106*
C100.49336 (19)0.13539 (18)0.10183 (6)0.0454 (3)
C110.4650 (3)0.1815 (2)0.04729 (7)0.0563 (4)
H110.49750.28150.03580.068*
C120.3884 (3)0.0780 (2)0.01049 (7)0.0613 (4)
H120.36980.1089−0.02610.074*
C130.3386 (2)−0.0713 (2)0.02686 (7)0.0588 (4)
C140.3663 (2)−0.1131 (2)0.08149 (8)0.0580 (4)
H140.3330−0.21280.09310.070*
C150.4417 (2)−0.01158 (18)0.11920 (6)0.0511 (3)
H150.4577−0.04180.15600.061*
C160.2546 (4)−0.1816 (3)−0.01457 (11)0.0911 (8)
H16A0.3326−0.1919−0.04620.137*
H16B0.1401−0.1410−0.02630.137*
H16C0.2378−0.28240.00230.137*
U11U22U33U12U13U23
S10.0537 (2)0.04504 (19)0.04650 (18)0.00360 (16)0.00099 (15)−0.00251 (14)
O10.0699 (8)0.0764 (9)0.0528 (6)0.0157 (7)−0.0092 (5)0.0025 (6)
O20.0525 (6)0.0466 (6)0.0509 (5)0.0076 (5)0.0038 (5)−0.0048 (4)
O30.0840 (9)0.0527 (7)0.0645 (7)−0.0127 (6)0.0057 (7)0.0006 (6)
C10.0492 (8)0.0512 (9)0.0576 (9)−0.0011 (7)−0.0075 (7)−0.0026 (7)
C20.0422 (7)0.0406 (7)0.0513 (8)−0.0022 (6)−0.0032 (6)−0.0052 (6)
C30.0405 (7)0.0431 (7)0.0518 (8)−0.0004 (6)−0.0019 (6)−0.0059 (6)
C40.0432 (7)0.0558 (9)0.0642 (9)−0.0004 (7)0.0034 (6)−0.0108 (8)
C50.0406 (7)0.0647 (10)0.0808 (12)0.0102 (7)0.0022 (8)−0.0110 (9)
C60.0455 (9)0.0640 (10)0.0766 (11)0.0082 (8)−0.0098 (8)−0.0002 (9)
C70.0604 (10)0.0814 (13)0.0667 (10)0.0081 (10)0.0142 (9)−0.0172 (9)
C80.1024 (18)0.120 (2)0.0680 (12)0.0358 (17)−0.0160 (12)0.0157 (14)
C90.0540 (9)0.0672 (11)0.0915 (14)0.0034 (8)0.0160 (9)−0.0008 (10)
C100.0431 (7)0.0479 (8)0.0452 (7)0.0019 (6)0.0009 (6)−0.0012 (6)
C110.0641 (10)0.0556 (9)0.0493 (8)−0.0001 (8)−0.0012 (7)0.0050 (7)
C120.0646 (11)0.0735 (11)0.0457 (7)0.0000 (9)−0.0038 (7)−0.0004 (8)
C130.0483 (8)0.0698 (11)0.0583 (9)−0.0012 (8)−0.0009 (7)−0.0117 (8)
C140.0550 (9)0.0525 (9)0.0665 (9)−0.0093 (7)0.0023 (7)0.0003 (7)
C150.0505 (8)0.0536 (8)0.0490 (7)−0.0021 (7)0.0000 (6)0.0049 (6)
C160.0964 (17)0.0960 (17)0.0808 (14)−0.0243 (15)−0.0147 (13)−0.0228 (13)
S1—O31.4877 (13)C8—H8A0.9600
S1—C31.7959 (15)C8—H8B0.9600
S1—C101.7961 (15)C8—H8C0.9600
S1—O22.8595 (11)C9—H9A0.9600
O1—C11.361 (2)C9—H9B0.9600
O1—C81.421 (2)C9—H9C0.9600
O2—C21.3665 (18)C10—C151.377 (2)
O2—C91.425 (2)C10—C111.388 (2)
C1—C61.384 (2)C11—C121.375 (2)
C1—C21.403 (2)C11—H110.9300
C2—C31.389 (2)C12—C131.385 (3)
C3—C41.405 (2)C12—H120.9300
C4—C51.378 (3)C13—C141.380 (3)
C4—C71.509 (3)C13—C161.508 (3)
C5—C61.389 (3)C14—C151.375 (2)
C5—H50.9300C14—H140.9300
C6—H60.9300C15—H150.9300
C7—H7A0.9600C16—H16A0.9600
C7—H7B0.9600C16—H16B0.9600
C7—H7C0.9600C16—H16C0.9600
O3—S1—C3108.86 (8)O1—C8—H8B109.5
O3—S1—C10107.00 (7)H8A—C8—H8B109.5
C3—S1—C1099.27 (7)O1—C8—H8C109.5
O3—S1—O2126.76 (6)H8A—C8—H8C109.5
C3—S1—O256.39 (5)H8B—C8—H8C109.5
C10—S1—O2125.07 (5)O2—C9—H9A109.5
C1—O1—C8117.33 (16)O2—C9—H9B109.5
C2—O2—C9115.36 (12)H9A—C9—H9B109.5
C2—O2—S168.76 (8)O2—C9—H9C109.5
C9—O2—S1107.45 (11)H9A—C9—H9C109.5
O1—C1—C6125.38 (15)H9B—C9—H9C109.5
O1—C1—C2115.42 (15)C15—C10—C11120.28 (15)
C6—C1—C2119.19 (16)C15—C10—S1121.85 (11)
O2—C2—C3120.42 (13)C11—C10—S1117.64 (13)
O2—C2—C1119.74 (14)C12—C11—C10119.40 (16)
C3—C2—C1119.74 (14)C12—C11—H11120.3
C2—C3—C4121.52 (14)C10—C11—H11120.3
C2—C3—S1114.39 (11)C11—C12—C13121.22 (15)
C4—C3—S1123.99 (12)C11—C12—H12119.4
C5—C4—C3117.11 (16)C13—C12—H12119.4
C5—C4—C7119.62 (16)C14—C13—C12118.07 (16)
C3—C4—C7123.27 (16)C14—C13—C16122.10 (19)
C4—C5—C6122.54 (15)C12—C13—C16119.83 (18)
C4—C5—H5118.7C15—C14—C13121.86 (16)
C6—C5—H5118.7C15—C14—H14119.1
C1—C6—C5119.86 (16)C13—C14—H14119.1
C1—C6—H6120.1C14—C15—C10119.14 (14)
C5—C6—H6120.1C14—C15—H15120.4
C4—C7—H7A109.5C10—C15—H15120.4
C4—C7—H7B109.5C13—C16—H16A109.5
H7A—C7—H7B109.5C13—C16—H16B109.5
C4—C7—H7C109.5H16A—C16—H16B109.5
H7A—C7—H7C109.5C13—C16—H16C109.5
H7B—C7—H7C109.5H16A—C16—H16C109.5
O1—C8—H8A109.5H16B—C16—H16C109.5
O3—S1—O2—C2−90.50 (11)C2—C3—C4—C51.6 (2)
C3—S1—O2—C2−1.18 (9)S1—C3—C4—C5177.80 (13)
C10—S1—O2—C275.52 (10)C2—C3—C4—C7−178.16 (17)
O3—S1—O2—C9158.43 (11)S1—C3—C4—C7−2.0 (2)
C3—S1—O2—C9−112.24 (11)C3—C4—C5—C6−0.1 (3)
C10—S1—O2—C9−35.55 (12)C7—C4—C5—C6179.69 (19)
C8—O1—C1—C6−5.7 (3)O1—C1—C6—C5−179.05 (18)
C8—O1—C1—C2174.92 (19)C2—C1—C6—C50.3 (3)
C9—O2—C2—C3101.36 (18)C4—C5—C6—C1−0.9 (3)
S1—O2—C2—C31.47 (11)O3—S1—C10—C15157.47 (13)
C9—O2—C2—C1−82.32 (19)C3—S1—C10—C1544.36 (14)
S1—O2—C2—C1177.79 (15)O2—S1—C10—C15−10.85 (15)
O1—C1—C2—O24.2 (2)O3—S1—C10—C11−28.07 (16)
C6—C1—C2—O2−175.16 (14)C3—S1—C10—C11−141.18 (14)
O1—C1—C2—C3−179.42 (15)O2—S1—C10—C11163.61 (12)
C6—C1—C2—C31.2 (2)C15—C10—C11—C12−1.4 (3)
O2—C2—C3—C4174.15 (14)S1—C10—C11—C12−175.92 (14)
C1—C2—C3—C4−2.2 (2)C10—C11—C12—C130.2 (3)
O2—C2—C3—S1−2.40 (19)C11—C12—C13—C140.6 (3)
C1—C2—C3—S1−178.71 (12)C11—C12—C13—C16179.9 (2)
O3—S1—C3—C2123.34 (12)C12—C13—C14—C15−0.3 (3)
C10—S1—C3—C2−125.01 (12)C16—C13—C14—C15−179.6 (2)
O2—S1—C3—C21.19 (9)C13—C14—C15—C10−0.9 (3)
O3—S1—C3—C4−53.11 (15)C11—C10—C15—C141.7 (2)
C10—S1—C3—C458.54 (14)S1—C10—C15—C14176.01 (13)
O2—S1—C3—C4−175.27 (16)
D—H···AD—HH···AD···AD—H···A
C8—H8B···O3i0.962.583.366 (3)139.
C14—H14···O1ii0.932.593.457 (2)155.
C15—H15···O2ii0.932.553.3886 (18)150.
C12—H12···O3iii0.932.563.406 (2)152.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8B⋯O3i0.962.583.366 (3)139
C14—H14⋯O1ii0.932.593.457 (2)155
C15—H15⋯O2ii0.932.553.3886 (18)150
C12—H12⋯O3iii0.932.563.406 (2)152

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Asymmetric synthesis of (S)-(-)-xylopinine. Use of the sulfinyl group as an ipso director in aromatic SE.

Authors:  Virginia M Mastranzo; Francisco Yuste; Benjamín Ortiz; Rubén Sánchez-Obregón; Rubén A Toscano; José L García Ruano
Journal:  J Org Chem       Date:  2011-05-25       Impact factor: 4.354

  2 in total

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