Literature DB >> 22219953

N-[(R)-(6-Bromo-2-meth-oxy-quinolin-3-yl)(phen-yl)meth-yl]-N-[(S)-1-(4-meth-oxy-phen-yl)eth-yl]-2-(piperazin-1-yl)acetamide.

Lei Yuan, Rui Wang, Chang-Yi Li, Zhi-Qiang Wang, Tie-Min Sun.   

Abstract

In the title compound, C(32)H(35)BrN(4)O(3), the piperazine ring exists in a chair conformation. The quinoline ring system is oriented at dihedral angles of 82.70 (17) and 19.54 (17)° to the phenyl and meth-oxy-phenyl rings, respectively. Weak inter-molecular C-H⋯π inter-actions are present in the crystal structure.

Entities:  

Year:  2011        PMID: 22219953      PMCID: PMC3247335          DOI: 10.1107/S1600536811040955

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of other phamaceutically active derivatives through conventional and other synthetic routes, see: Andries et al. (2005 ▶); Gaurrand et al. (2006 ▶); Mao et al. (2007 ▶); Dalla Via et al. (2008 ▶). For related structures, see: Cai et al. (2009 ▶); Petit et al. (2007 ▶).

Experimental

Crystal data

C32H35BrN4O3 M = 603.55 Orthorhombic, a = 9.9738 (9) Å b = 10.9397 (10) Å c = 27.910 (3) Å V = 3045.3 (5) Å3 Z = 4 Mo Kα radiation μ = 1.39 mm−1 T = 293 K 0.26 × 0.21 × 0.13 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.712, T max = 0.835 18937 measured reflections 5999 independent reflections 4518 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.170 S = 1.02 5999 reflections 361 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.56 e Å−3 Absolute structure: Flack (1983 ▶), 2585 Friedel pairs Flack parameter: 0.011 (12) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811040955/xu5339sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811040955/xu5339Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811040955/xu5339Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H35BrN4O3F(000) = 1256
Mr = 603.55Dx = 1.316 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2354 reflections
a = 9.9738 (9) Åθ = 2.0–25.0°
b = 10.9397 (10) ŵ = 1.39 mm1
c = 27.910 (3) ÅT = 293 K
V = 3045.3 (5) Å3Block, colourless
Z = 40.26 × 0.21 × 0.13 mm
Bruker APEXII diffractometer5999 independent reflections
Radiation source: fine-focus sealed tube4518 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 10.0 pixels mm-1θmax = 26.0°, θmin = 1.5°
ω scansh = −12→11
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)k = −13→13
Tmin = 0.712, Tmax = 0.835l = −32→34
18937 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.170w = 1/[σ2(Fo2) + (0.109P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
5999 reflectionsΔρmax = 0.34 e Å3
361 parametersΔρmin = −0.56 e Å3
0 restraintsAbsolute structure: Flack (1983), 2585 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.011 (12)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1.16448 (6)−0.50994 (6)0.67941 (2)0.0885 (3)
O20.5985 (3)−0.1119 (3)0.63967 (10)0.0483 (7)
N20.6854 (3)0.0788 (3)0.64410 (10)0.0371 (7)
O30.5042 (4)0.5855 (3)0.55607 (14)0.0717 (10)
O11.0020 (3)0.1519 (3)0.56260 (13)0.0601 (8)
N30.4433 (3)0.0798 (3)0.71731 (11)0.0407 (7)
N11.1268 (3)−0.0147 (3)0.58380 (12)0.0447 (8)
C120.6723 (4)0.0284 (3)0.55538 (13)0.0379 (8)
C80.8885 (4)−0.0074 (3)0.60224 (12)0.0366 (8)
C41.1325 (4)−0.1290 (3)0.60612 (12)0.0382 (8)
C170.7336 (4)−0.0184 (4)0.51555 (13)0.0463 (9)
H170.8258−0.03110.51570.056*
C110.7584 (4)0.0681 (3)0.59812 (12)0.0360 (8)
H110.78780.15140.59050.043*
C70.8947 (4)−0.1195 (4)0.62209 (13)0.0419 (9)
H70.8170−0.15540.63400.050*
C51.0190 (4)−0.1841 (4)0.62510 (13)0.0408 (9)
C250.7040 (4)0.1975 (4)0.67042 (14)0.0438 (9)
H250.64430.19490.69830.053*
C61.0297 (4)−0.3000 (4)0.64702 (14)0.0486 (10)
H60.9539−0.33910.65900.058*
C260.6586 (4)0.3032 (4)0.64005 (13)0.0414 (8)
C21.2674 (4)−0.2991 (4)0.63264 (15)0.0490 (10)
H21.3500−0.33750.63600.059*
C190.5536 (4)−0.0052 (5)0.71269 (14)0.0530 (11)
H19A0.5233−0.08530.72290.064*
H19B0.62460.02000.73430.064*
C31.2584 (4)−0.1884 (4)0.61003 (14)0.0464 (10)
H31.3348−0.15220.59720.056*
C160.6590 (4)−0.0473 (4)0.47472 (15)0.0567 (11)
H160.7017−0.07940.44790.068*
C91.0115 (4)0.0395 (3)0.58310 (14)0.0414 (9)
C130.5344 (4)0.0471 (4)0.55422 (15)0.0482 (10)
H130.49130.08020.58080.058*
C270.7433 (4)0.3932 (4)0.62201 (16)0.0522 (11)
H270.83470.38820.62830.063*
C290.5599 (4)0.4968 (4)0.58342 (16)0.0514 (10)
C310.5236 (4)0.3155 (4)0.62922 (17)0.0496 (10)
H310.46340.25820.64120.060*
C280.6960 (4)0.4898 (4)0.59510 (17)0.0554 (11)
H280.75470.55040.58470.066*
C180.6126 (4)−0.0162 (4)0.66139 (14)0.0418 (9)
C150.5229 (5)−0.0284 (4)0.47393 (16)0.0564 (11)
H150.4734−0.04620.44660.068*
C300.4758 (5)0.4090 (4)0.60162 (18)0.0581 (12)
H300.38450.41320.59500.070*
C240.8467 (5)0.2064 (5)0.68981 (17)0.0624 (12)
H24A0.86620.13540.70880.094*
H24B0.85500.27830.70930.094*
H24C0.90870.21100.66360.094*
C11.1521 (5)−0.3534 (4)0.65043 (13)0.0505 (10)
C230.4107 (5)0.0920 (6)0.76822 (15)0.0657 (14)
H23A0.48810.12280.78540.079*
H23B0.38810.01240.78130.079*
C200.3260 (4)0.0351 (5)0.69106 (16)0.0595 (12)
H20A0.3012−0.04480.70320.071*
H20B0.34890.02610.65750.071*
C140.4610 (5)0.0170 (5)0.51402 (16)0.0605 (12)
H140.36850.02760.51410.073*
C220.2923 (5)0.1794 (6)0.77515 (19)0.0723 (15)
H22A0.27100.18540.80900.087*
H22B0.31680.26020.76380.087*
N40.1719 (5)0.1351 (6)0.74826 (18)0.0963 (17)
H4A0.09420.12100.76040.116*
C210.2101 (5)0.1193 (7)0.69568 (18)0.0829 (19)
H21A0.13430.08670.67800.100*
H21B0.23300.19810.68200.100*
C101.1213 (5)0.1999 (5)0.5407 (3)0.0880 (19)
H10A1.10250.27880.52720.132*
H10B1.15040.14550.51580.132*
H10C1.19060.20730.56440.132*
C320.5833 (7)0.6817 (5)0.5379 (2)0.0825 (16)
H32A0.52810.73540.51910.124*
H32B0.65330.64880.51810.124*
H32C0.62220.72650.56400.124*
U11U22U33U12U13U23
Br0.0962 (5)0.0790 (4)0.0903 (4)0.0348 (3)0.0057 (3)0.0237 (3)
O20.0438 (15)0.0432 (16)0.0578 (16)0.0021 (13)0.0115 (13)0.0067 (14)
N20.0342 (17)0.0399 (16)0.0371 (15)0.0056 (14)0.0051 (13)−0.0013 (13)
O30.065 (2)0.053 (2)0.097 (2)0.0068 (16)−0.0065 (19)0.0160 (18)
O10.0421 (16)0.0471 (17)0.091 (2)0.0057 (14)0.0201 (15)0.0181 (16)
N30.0303 (16)0.052 (2)0.0395 (17)0.0027 (14)0.0058 (13)−0.0062 (15)
N10.0298 (16)0.0457 (18)0.0586 (19)0.0010 (14)0.0049 (14)−0.0059 (16)
C120.039 (2)0.0334 (18)0.0411 (18)0.0038 (16)0.0024 (16)0.0054 (14)
C80.0315 (18)0.0396 (19)0.0386 (18)0.0056 (16)0.0041 (14)0.0014 (16)
C40.036 (2)0.040 (2)0.0389 (19)0.0040 (16)−0.0022 (15)−0.0102 (15)
C170.038 (2)0.056 (2)0.045 (2)0.0102 (19)0.0055 (16)0.0024 (19)
C110.0310 (19)0.041 (2)0.0360 (19)0.0076 (16)0.0088 (15)0.0030 (15)
C70.0311 (18)0.050 (2)0.045 (2)0.0083 (17)0.0079 (16)0.0051 (17)
C50.042 (2)0.044 (2)0.0373 (19)0.0103 (17)0.0066 (16)0.0013 (16)
C250.037 (2)0.051 (2)0.043 (2)0.0068 (17)0.0039 (16)−0.0121 (17)
C60.050 (2)0.049 (2)0.046 (2)0.014 (2)0.0122 (19)0.0105 (18)
C260.035 (2)0.044 (2)0.0448 (19)0.0037 (18)0.0023 (17)−0.0102 (16)
C20.041 (2)0.050 (2)0.056 (2)0.0195 (19)−0.009 (2)−0.015 (2)
C190.045 (2)0.068 (3)0.045 (2)0.020 (2)0.0138 (17)0.019 (2)
C30.030 (2)0.053 (2)0.056 (2)0.0023 (18)−0.0011 (17)−0.016 (2)
C160.056 (3)0.066 (3)0.048 (2)0.006 (2)0.003 (2)−0.011 (2)
C90.038 (2)0.039 (2)0.047 (2)0.0015 (17)0.0038 (17)0.0021 (16)
C130.037 (2)0.061 (3)0.046 (2)0.0158 (19)0.0006 (18)0.0003 (18)
C270.031 (2)0.055 (3)0.070 (3)−0.0005 (19)0.002 (2)−0.003 (2)
C290.049 (2)0.043 (2)0.062 (2)0.007 (2)0.0042 (19)0.001 (2)
C310.028 (2)0.043 (2)0.078 (3)0.0025 (17)0.0074 (19)0.007 (2)
C280.043 (2)0.045 (2)0.079 (3)−0.006 (2)0.014 (2)−0.001 (2)
C180.0315 (18)0.049 (2)0.0449 (19)0.0122 (17)0.0053 (16)0.0067 (18)
C150.056 (3)0.064 (3)0.049 (2)0.004 (2)−0.011 (2)−0.004 (2)
C300.037 (2)0.050 (3)0.087 (3)−0.0009 (19)−0.005 (2)0.003 (2)
C240.051 (3)0.074 (3)0.062 (3)0.008 (2)−0.014 (2)−0.012 (2)
C10.062 (3)0.053 (2)0.037 (2)0.021 (2)−0.0003 (19)−0.0004 (17)
C230.045 (3)0.109 (4)0.043 (2)0.000 (3)0.002 (2)−0.011 (3)
C200.043 (2)0.079 (3)0.056 (2)0.001 (2)0.0051 (19)−0.024 (2)
C140.037 (2)0.073 (3)0.071 (3)0.005 (2)−0.005 (2)0.006 (3)
C220.047 (3)0.102 (4)0.068 (3)−0.002 (3)0.011 (2)−0.041 (3)
N40.059 (3)0.143 (5)0.087 (3)0.010 (3)0.013 (2)−0.045 (3)
C210.043 (3)0.141 (6)0.065 (3)0.025 (3)−0.004 (2)−0.032 (3)
C100.058 (3)0.066 (3)0.140 (5)0.000 (3)0.041 (3)0.032 (3)
C320.112 (5)0.051 (3)0.085 (3)−0.003 (3)0.009 (4)0.013 (3)
Br—C11.898 (4)C19—H19B0.9700
O2—C181.217 (5)C3—H30.9300
N2—C181.357 (5)C16—C151.373 (6)
N2—C111.480 (4)C16—H160.9300
N2—C251.504 (5)C13—C141.379 (6)
O3—C291.353 (5)C13—H130.9300
O3—C321.410 (6)C27—C281.379 (6)
O1—C91.360 (5)C27—H270.9300
O1—C101.437 (6)C29—C301.373 (6)
N3—C191.446 (5)C29—C281.398 (6)
N3—C231.464 (5)C31—C301.366 (6)
N3—C201.464 (5)C31—H310.9300
N1—C91.294 (5)C28—H280.9300
N1—C41.399 (5)C15—C141.371 (7)
C12—C171.368 (5)C15—H150.9300
C12—C131.391 (5)C30—H300.9300
C12—C111.533 (5)C24—H24A0.9600
C8—C71.346 (5)C24—H24B0.9600
C8—C91.433 (5)C24—H24C0.9600
C8—C111.543 (5)C23—C221.531 (7)
C4—C51.388 (5)C23—H23A0.9700
C4—C31.418 (5)C23—H23B0.9700
C17—C161.398 (6)C20—C211.483 (7)
C17—H170.9300C20—H20A0.9700
C11—H110.9800C20—H20B0.9700
C7—C51.429 (5)C14—H140.9300
C7—H70.9300C22—N41.497 (7)
C5—C61.412 (6)C22—H22A0.9700
C25—C261.503 (6)C22—H22B0.9700
C25—C241.526 (6)N4—C211.526 (7)
C25—H250.9800N4—H4A0.8600
C6—C11.357 (6)C21—H21A0.9700
C6—H60.9300C21—H21B0.9700
C26—C311.387 (6)C10—H10A0.9600
C26—C271.392 (6)C10—H10B0.9600
C2—C31.368 (6)C10—H10C0.9600
C2—C11.387 (6)C32—H32A0.9600
C2—H20.9300C32—H32B0.9600
C19—C181.553 (5)C32—H32C0.9600
C19—H19A0.9700
C18—N2—C11120.8 (3)O3—C29—C30117.3 (4)
C18—N2—C25123.6 (3)O3—C29—C28124.7 (4)
C11—N2—C25115.5 (3)C30—C29—C28118.0 (4)
C29—O3—C32120.6 (4)C30—C31—C26122.3 (4)
C9—O1—C10116.8 (3)C30—C31—H31118.8
C19—N3—C23108.3 (3)C26—C31—H31118.8
C19—N3—C20110.4 (3)C27—C28—C29120.1 (4)
C23—N3—C20109.8 (3)C27—C28—H28120.0
C9—N1—C4116.9 (3)C29—C28—H28120.0
C17—C12—C13118.6 (4)O2—C18—N2122.9 (3)
C17—C12—C11119.2 (3)O2—C18—C19118.9 (4)
C13—C12—C11122.0 (3)N2—C18—C19118.1 (4)
C7—C8—C9116.1 (3)C14—C15—C16119.1 (4)
C7—C8—C11123.8 (3)C14—C15—H15120.5
C9—C8—C11120.0 (3)C16—C15—H15120.5
C5—C4—N1121.7 (3)C31—C30—C29121.3 (4)
C5—C4—C3119.7 (4)C31—C30—H30119.4
N1—C4—C3118.7 (3)C29—C30—H30119.4
C12—C17—C16120.6 (4)C25—C24—H24A109.5
C12—C17—H17119.7C25—C24—H24B109.5
C16—C17—H17119.7H24A—C24—H24B109.5
N2—C11—C12114.9 (3)C25—C24—H24C109.5
N2—C11—C8113.0 (3)H24A—C24—H24C109.5
C12—C11—C8112.2 (3)H24B—C24—H24C109.5
N2—C11—H11105.2C6—C1—C2122.4 (4)
C12—C11—H11105.2C6—C1—Br118.5 (3)
C8—C11—H11105.2C2—C1—Br119.0 (3)
C8—C7—C5120.9 (4)N3—C23—C22110.5 (4)
C8—C7—H7119.5N3—C23—H23A109.5
C5—C7—H7119.5C22—C23—H23A109.5
C4—C5—C6119.5 (4)N3—C23—H23B109.5
C4—C5—C7118.1 (4)C22—C23—H23B109.5
C6—C5—C7122.4 (4)H23A—C23—H23B108.1
C26—C25—N2110.6 (3)N3—C20—C21111.8 (4)
C26—C25—C24115.6 (4)N3—C20—H20A109.3
N2—C25—C24110.1 (3)C21—C20—H20A109.3
C26—C25—H25106.7N3—C20—H20B109.3
N2—C25—H25106.7C21—C20—H20B109.3
C24—C25—H25106.7H20A—C20—H20B107.9
C1—C6—C5119.1 (4)C15—C14—C13120.8 (4)
C1—C6—H6120.5C15—C14—H14119.6
C5—C6—H6120.5C13—C14—H14119.6
C31—C26—C27116.2 (4)N4—C22—C23110.7 (4)
C31—C26—C25119.4 (4)N4—C22—H22A109.5
C27—C26—C25124.5 (4)C23—C22—H22A109.5
C3—C2—C1119.4 (4)N4—C22—H22B109.5
C3—C2—H2120.3C23—C22—H22B109.5
C1—C2—H2120.3H22A—C22—H22B108.1
N3—C19—C18114.9 (3)C22—N4—C21108.6 (4)
N3—C19—H19A108.5C22—N4—H4A125.7
C18—C19—H19A108.5C21—N4—H4A125.7
N3—C19—H19B108.5C20—C21—N4110.4 (5)
C18—C19—H19B108.5C20—C21—H21A109.6
H19A—C19—H19B107.5N4—C21—H21A109.6
C2—C3—C4119.9 (4)C20—C21—H21B109.6
C2—C3—H3120.0N4—C21—H21B109.6
C4—C3—H3120.0H21A—C21—H21B108.1
C15—C16—C17120.4 (4)O1—C10—H10A109.5
C15—C16—H16119.8O1—C10—H10B109.5
C17—C16—H16119.8H10A—C10—H10B109.5
N1—C9—O1118.8 (3)O1—C10—H10C109.5
N1—C9—C8126.3 (4)H10A—C10—H10C109.5
O1—C9—C8114.9 (3)H10B—C10—H10C109.5
C14—C13—C12120.5 (4)O3—C32—H32A109.5
C14—C13—H13119.7O3—C32—H32B109.5
C12—C13—H13119.7H32A—C32—H32B109.5
C28—C27—C26122.1 (4)O3—C32—H32C109.5
C28—C27—H27118.9H32A—C32—H32C109.5
C26—C27—H27118.9H32B—C32—H32C109.5
Cg is the centroid of the C12–C17 phenyl ring.
D—H···AD—HH···AD···AD—H···A
C10—H10A···Cgi0.962.693.639 (6)170.
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C12–C17 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10ACgi0.962.693.639 (6)170

Symmetry code: (i) .

  6 in total

1.  A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosis.

Authors:  Koen Andries; Peter Verhasselt; Jerome Guillemont; Hinrich W H Göhlmann; Jean-Marc Neefs; Hans Winkler; Jef Van Gestel; Philip Timmerman; Min Zhu; Ennis Lee; Peter Williams; Didier de Chaffoy; Emma Huitric; Sven Hoffner; Emmanuelle Cambau; Chantal Truffot-Pernot; Nacer Lounis; Vincent Jarlier
Journal:  Science       Date:  2004-12-09       Impact factor: 47.728

2.  Conformational analysis of r207910, a new drug candidate for the treatment of tuberculosis, by a combined NMR and molecular modeling approach.

Authors:  Sandrine Gaurrand; Stéphanie Desjardins; Christophe Meyer; Pascal Bonnet; Jean-Michel Argoullon; Hassan Oulyadi; Jérôme Guillemont
Journal:  Chem Biol Drug Des       Date:  2006-08       Impact factor: 2.817

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Discovery of a new anilino-3H-pyrrolo[3,2-f]quinoline derivative as potential anti-cancer agent.

Authors:  L Dalla Via; O Gia; V Gasparotto; M G Ferlin
Journal:  Eur J Med Chem       Date:  2007-05-06       Impact factor: 6.514

5.  N-[(6-Bromo-2-meth-oxy-3-quinol-yl)phenyl-meth-yl]-2-morpholino-N-(1-phenyl-ethyl)acetamide.

Authors:  Zhi-Qiang Cai; Gang Xiong; Shan-Rong Li; Jian-Bo Liu; Tie-Min Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

6.  Design, synthesis, and pharmacological evaluation of mefloquine-based ligands as novel antituberculosis agents.

Authors:  Jialin Mao; Yuehong Wang; Baojie Wan; Alan P Kozikowski; Scott G Franzblau
Journal:  ChemMedChem       Date:  2007-11       Impact factor: 3.466

  6 in total

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