Literature DB >> 22219948

2-{[4-(Pyridin-2-yl)pyrimidin-2-yl]sulfan-yl}acetic acid.

Lin Wang1, Hua-Ze Dong.   

Abstract

In the title mol-ecule, C(11)H(9)N(3)O(2)S, the pyridine and pyrimidine rings are almost parallel [dihedral angle = 6.7 (1)°]. In the crystal, adjacent mol-ecules are joined by O-H⋯N and C-H⋯O hydrogen bonds, leading to the formation of a sheet parallel to (10[Formula: see text]).

Entities:  

Year:  2011        PMID: 22219948      PMCID: PMC3247330          DOI: 10.1107/S1600536811039791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis and general background, see: Dong et al. (2009 ▶); Wang (2011 ▶). For the crystal structures of coord­ination complexes with related ligands, see: Du et al. (2004 ▶); Zhu et al. (2009 ▶).

Experimental

Crystal data

C11H9N3O2S M = 247.28 Monoclinic, a = 6.5722 (2) Å b = 22.4650 (8) Å c = 7.4314 (2) Å β = 93.237 (2)° V = 1095.45 (6) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 291 K 0.28 × 0.20 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.920, T max = 0.950 10868 measured reflections 2524 independent reflections 2116 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.05 2524 reflections 155 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039791/kj2186sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039791/kj2186Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039791/kj2186Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9N3O2SF(000) = 512.0
Mr = 247.28Dx = 1.499 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2524 reflections
a = 6.5722 (2) Åθ = 1.8–27.5°
b = 22.4650 (8) ŵ = 0.29 mm1
c = 7.4314 (2) ÅT = 291 K
β = 93.237 (2)°Block, pale yellow
V = 1095.45 (6) Å30.28 × 0.20 × 0.18 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2524 independent reflections
Radiation source: fine-focus sealed tube2116 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −8→8
Tmin = 0.920, Tmax = 0.950k = −24→29
10868 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0449P)2 + 0.289P] where P = (Fo2 + 2Fc2)/3
2524 reflections(Δ/σ)max = 0.001
155 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The structure was solved by direct methods (Bruker, 2000) and successive difference Fourier syntheses.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.0901 (2)0.34978 (6)0.26132 (19)0.0342 (3)
C2−0.3668 (2)0.39680 (7)0.1300 (2)0.0412 (4)
H2A−0.49730.39590.07470.049*
C3−0.2718 (2)0.45062 (7)0.1562 (2)0.0391 (3)
H3−0.33700.48600.12290.047*
C4−0.0745 (2)0.45042 (6)0.23433 (19)0.0327 (3)
C50.0431 (2)0.50633 (6)0.25998 (19)0.0333 (3)
C60.2462 (2)0.50591 (7)0.3208 (2)0.0427 (4)
H60.31200.47020.34930.051*
C70.3493 (3)0.55934 (8)0.3385 (2)0.0511 (4)
H70.48620.56020.37780.061*
C80.2464 (3)0.61115 (7)0.2972 (2)0.0493 (4)
H80.31130.64780.30960.059*
C90.0444 (3)0.60757 (7)0.2367 (3)0.0490 (4)
H9−0.02420.64280.20780.059*
C100.2527 (2)0.30146 (7)0.4321 (2)0.0380 (3)
H10A0.32690.32420.34630.046*
H10B0.23690.32590.53800.046*
C110.3674 (2)0.24555 (7)0.4832 (2)0.0365 (3)
N10.01710 (17)0.39939 (5)0.28821 (16)0.0340 (3)
N2−0.27844 (18)0.34541 (6)0.18112 (18)0.0391 (3)
N3−0.0580 (2)0.55666 (6)0.21748 (19)0.0432 (3)
O10.30963 (19)0.19622 (5)0.4458 (2)0.0623 (4)
O20.53762 (17)0.25707 (5)0.57657 (19)0.0544 (3)
H20.59450.22570.60570.082*
S10.00702 (6)0.280700 (17)0.33349 (6)0.04496 (15)
U11U22U33U12U13U23
C10.0331 (7)0.0315 (7)0.0371 (8)−0.0008 (6)−0.0044 (6)0.0020 (6)
C20.0329 (7)0.0395 (8)0.0500 (9)0.0000 (6)−0.0100 (6)0.0044 (7)
C30.0357 (7)0.0329 (8)0.0477 (9)0.0046 (6)−0.0053 (6)0.0035 (6)
C40.0344 (7)0.0297 (7)0.0338 (7)0.0004 (5)0.0004 (6)0.0001 (5)
C50.0373 (7)0.0279 (7)0.0345 (7)0.0011 (6)−0.0004 (6)−0.0005 (6)
C60.0425 (8)0.0330 (8)0.0512 (9)−0.0010 (6)−0.0106 (7)0.0027 (7)
C70.0470 (9)0.0454 (10)0.0591 (11)−0.0091 (7)−0.0137 (8)−0.0012 (8)
C80.0612 (10)0.0321 (8)0.0543 (10)−0.0104 (7)0.0000 (8)−0.0057 (7)
C90.0564 (10)0.0281 (8)0.0628 (11)0.0042 (7)0.0045 (8)−0.0008 (7)
C100.0340 (7)0.0297 (8)0.0491 (9)0.0002 (6)−0.0078 (6)0.0004 (6)
C110.0324 (7)0.0313 (8)0.0452 (8)0.0003 (6)−0.0041 (6)−0.0005 (6)
N10.0328 (6)0.0284 (6)0.0399 (7)−0.0004 (5)−0.0052 (5)0.0024 (5)
N20.0347 (6)0.0331 (7)0.0482 (7)−0.0028 (5)−0.0096 (5)0.0040 (5)
N30.0418 (7)0.0286 (7)0.0587 (8)0.0041 (5)0.0000 (6)0.0007 (6)
O10.0526 (7)0.0291 (6)0.1011 (11)−0.0001 (5)−0.0329 (7)−0.0024 (6)
O20.0424 (6)0.0322 (6)0.0852 (9)0.0028 (5)−0.0269 (6)−0.0038 (6)
S10.0384 (2)0.0272 (2)0.0670 (3)−0.00354 (15)−0.01691 (18)0.00762 (17)
C1—N11.3276 (18)C7—C81.372 (2)
C1—N21.3466 (18)C7—H70.9300
C1—S11.7507 (15)C8—C91.380 (2)
C2—N21.3377 (19)C8—H80.9300
C2—C31.369 (2)C9—N31.331 (2)
C2—H2A0.9300C9—H90.9300
C3—C41.3909 (19)C10—C111.503 (2)
C3—H30.9300C10—S11.7964 (14)
C4—N11.3453 (17)C10—H10A0.9700
C4—C51.4815 (19)C10—H10B0.9700
C5—N31.3401 (18)C11—O11.1991 (18)
C5—C61.385 (2)C11—O21.3085 (17)
C6—C71.381 (2)O2—H20.8200
C6—H60.9300
N1—C1—N2126.48 (13)C7—C8—C9118.45 (15)
N1—C1—S1121.11 (10)C7—C8—H8120.8
N2—C1—S1112.41 (10)C9—C8—H8120.8
N2—C2—C3122.31 (13)N3—C9—C8123.84 (15)
N2—C2—H2A118.8N3—C9—H9118.1
C3—C2—H2A118.8C8—C9—H9118.1
C2—C3—C4117.60 (13)C11—C10—S1108.22 (10)
C2—C3—H3121.2C11—C10—H10A110.1
C4—C3—H3121.2S1—C10—H10A110.1
N1—C4—C3121.20 (13)C11—C10—H10B110.1
N1—C4—C5117.57 (12)S1—C10—H10B110.1
C3—C4—C5121.23 (13)H10A—C10—H10B108.4
N3—C5—C6122.60 (14)O1—C11—O2123.76 (14)
N3—C5—C4115.89 (12)O1—C11—C10124.47 (13)
C6—C5—C4121.49 (13)O2—C11—C10111.76 (12)
C7—C6—C5118.94 (15)C1—N1—C4116.48 (12)
C7—C6—H6120.5C2—N2—C1115.86 (12)
C5—C6—H6120.5C9—N3—C5117.29 (14)
C8—C7—C6118.87 (15)C11—O2—H2109.5
C8—C7—H7120.6C1—S1—C10101.46 (7)
C6—C7—H7120.6
D—H···AD—HH···AD···AD—H···A
O2—H2···N2i0.821.872.694 (2)178
C2—H2A···O1ii0.932.583.230 (2)127
C8—H8···O2iii0.932.483.392 (2)165
C9—H9···O1iv0.932.453.296 (2)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N2i0.821.872.694 (2)178
C2—H2A⋯O1ii0.932.583.230 (2)127
C8—H8⋯O2iii0.932.483.392 (2)165
C9—H9⋯O1iv0.932.453.296 (2)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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