| Literature DB >> 22219944 |
Augusto Rivera, Diego Quiroga, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.
Abstract
The title compound, C(25)H(30)N(2)O(6), has the imidazolidine ring in an envelope conformation. There are two intra-molecular O-H⋯N hydrogen-bond inter-actions with graph-set motif S(6). The cyclo-hexane ring adopts a slightly distorted chair conformation. One methyl carboxyl-ate substituent forms a dihedral angle of 12.00 (5)° with the plane of the benzene ring, while the other methyl carboxyl-ate group is almost coplanar, making a dihedral angle of 2.26 (9)°. In the crystal, pairs of inter-molecular C-H⋯O hydrogen bonds form racemic dimers, corresponding to an R(2) (2)(18) graph-set motif. Further weak C-H⋯O inter-actions generate a chain running along the c axis.Entities:
Year: 2011 PMID: 22219944 PMCID: PMC3247326 DOI: 10.1107/S1600536811040906
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C25H30N2O6 | |
| Monoclinic, | Cu |
| Hall symbol: -C 2yc | Cell parameters from 9151 reflections |
| θ = 3.4–67.1° | |
| µ = 0.80 mm−1 | |
| β = 121.139 (3)° | Block, colourless |
| 0.41 × 0.23 × 0.16 mm | |
| Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector | 3970 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 3309 reflections with |
| mirror | |
| Detector resolution: 10.3784 pixels mm-1 | θmax = 67.1°, θmin = 3.9° |
| Rotation method data acquisition using ω scans | |
| Absorption correction: multi-scan ( | |
| 17421 measured reflections |
| Refinement on | 0 constraints |
| H atoms treated by a mixture of independent and constrained refinement | |
| Weighting scheme based on measured s.u.'s | |
| (Δ/σ)max = 0.045 | |
| 3970 reflections | Δρmax = 0.26 e Å−3 |
| 304 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints |
| Experimental. CrysAlisPro (Agilent Technologies, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Refinement. The refinement was carried out against all reflections. The conventional
|
| O1 | 0.25904 (4) | 0.33029 (11) | 1.07162 (5) | 0.0309 (4) | |
| O2 | 0.18467 (4) | 0.18439 (10) | 1.05612 (5) | 0.0305 (4) | |
| O3 | 0.03275 (4) | 0.68882 (11) | 0.84111 (5) | 0.0269 (4) | |
| O4 | 0.01966 (4) | 0.25644 (10) | 0.51016 (5) | 0.0275 (4) | |
| O5 | 0.10151 (4) | 0.15258 (9) | 0.52210 (5) | 0.0246 (4) | |
| O6 | 0.22213 (4) | 0.68869 (11) | 0.72919 (5) | 0.0281 (4) | |
| N1 | 0.11660 (5) | 0.80792 (11) | 0.82539 (6) | 0.0206 (4) | |
| N2 | 0.12619 (5) | 0.80593 (11) | 0.72269 (6) | 0.0203 (4) | |
| C1 | 0.12226 (6) | 0.70921 (14) | 0.77488 (7) | 0.0229 (5) | |
| C2 | 0.12528 (6) | 0.95764 (13) | 0.80739 (7) | 0.0200 (5) | |
| C3 | 0.09573 (6) | 1.07952 (14) | 0.82484 (7) | 0.0244 (6) | |
| C4 | 0.10153 (7) | 1.22240 (15) | 0.79175 (8) | 0.0282 (6) | |
| C5 | 0.07990 (6) | 1.20809 (15) | 0.71143 (8) | 0.0283 (6) | |
| C6 | 0.10988 (6) | 1.08124 (14) | 0.69607 (7) | 0.0252 (6) | |
| C7 | 0.09940 (6) | 0.94404 (13) | 0.72716 (7) | 0.0203 (5) | |
| C8 | 0.15534 (6) | 0.76766 (14) | 0.90155 (7) | 0.0221 (5) | |
| C9 | 0.13584 (6) | 0.62646 (14) | 0.91905 (6) | 0.0201 (5) | |
| C10 | 0.17667 (6) | 0.52797 (14) | 0.96778 (7) | 0.0209 (5) | |
| C11 | 0.15941 (6) | 0.40115 (14) | 0.98767 (7) | 0.0217 (5) | |
| C12 | 0.09912 (6) | 0.37225 (14) | 0.95701 (7) | 0.0232 (6) | |
| C13 | 0.05745 (6) | 0.46807 (14) | 0.90719 (7) | 0.0234 (6) | |
| C14 | 0.07510 (6) | 0.59530 (14) | 0.88841 (7) | 0.0208 (5) | |
| C15 | 0.20657 (6) | 0.30532 (14) | 1.04216 (7) | 0.0238 (6) | |
| C16 | 0.22831 (7) | 0.08821 (16) | 1.11053 (9) | 0.0354 (7) | |
| C17 | 0.09522 (6) | 0.74531 (14) | 0.64881 (7) | 0.0223 (5) | |
| C18 | 0.12328 (5) | 0.60631 (14) | 0.64261 (7) | 0.0196 (5) | |
| C19 | 0.08850 (6) | 0.49718 (13) | 0.59512 (7) | 0.0193 (5) | |
| C20 | 0.11324 (6) | 0.37195 (13) | 0.58482 (7) | 0.0202 (5) | |
| C21 | 0.17476 (6) | 0.35599 (14) | 0.62305 (7) | 0.0227 (5) | |
| C22 | 0.21021 (6) | 0.46283 (14) | 0.67116 (7) | 0.0243 (5) | |
| C23 | 0.18496 (6) | 0.58707 (14) | 0.68127 (7) | 0.0216 (5) | |
| C24 | 0.07276 (6) | 0.25842 (14) | 0.53542 (7) | 0.0209 (5) | |
| C25 | 0.06444 (6) | 0.03656 (14) | 0.47537 (8) | 0.0280 (6) | |
| H1a | 0.087447 | 0.649231 | 0.749828 | 0.0275* | |
| H1b | 0.158079 | 0.653125 | 0.801001 | 0.0275* | |
| H2 | 0.166122 | 0.986613 | 0.835672 | 0.024* | |
| H3a | 0.114963 | 1.0903 | 0.876215 | 0.0293* | |
| H3b | 0.05453 | 1.05683 | 0.804644 | 0.0293* | |
| H4a | 0.079681 | 1.2984 | 0.798436 | 0.0338* | |
| H4b | 0.142166 | 1.253728 | 0.817484 | 0.0338* | |
| H5a | 0.037711 | 1.194144 | 0.684606 | 0.034* | |
| H5b | 0.087307 | 1.297828 | 0.694408 | 0.034* | |
| H6a | 0.092156 | 1.070066 | 0.644902 | 0.0302* | |
| H6b | 0.151703 | 1.09954 | 0.719443 | 0.0302* | |
| H7 | 0.056997 | 0.938134 | 0.697421 | 0.0244* | |
| H8a | 0.155072 | 0.844511 | 0.931581 | 0.0265* | |
| H8b | 0.195371 | 0.757804 | 0.912249 | 0.0265* | |
| H10 | 0.218184 | 0.547519 | 0.988554 | 0.0251* | |
| H12 | 0.08652 | 0.285732 | 0.970499 | 0.0278* | |
| H13 | 0.01599 | 0.44652 | 0.885411 | 0.0281* | |
| H16a | 0.20887 | 0.004224 | 1.115555 | 0.0531* | |
| H16b | 0.255737 | 0.057284 | 1.096498 | 0.0531* | |
| H16c | 0.249366 | 0.139159 | 1.155739 | 0.0531* | |
| H17a | 0.094472 | 0.817116 | 0.616009 | 0.0268* | |
| H17b | 0.054477 | 0.727007 | 0.633433 | 0.0268* | |
| H19 | 0.046172 | 0.508256 | 0.568587 | 0.0232* | |
| H21 | 0.192427 | 0.270804 | 0.615918 | 0.0272* | |
| H22 | 0.25252 | 0.451248 | 0.697763 | 0.0291* | |
| H25a | 0.088144 | −0.030455 | 0.466731 | 0.0421* | |
| H25b | 0.046388 | −0.014333 | 0.49793 | 0.0421* | |
| H25c | 0.034108 | 0.077264 | 0.430369 | 0.0421* | |
| H3 | 0.0529 (8) | 0.750 (2) | 0.8286 (10) | 0.0404* | |
| H6 | 0.1986 (8) | 0.751 (2) | 0.7320 (10) | 0.0422* |
| O1 | 0.0282 (5) | 0.0290 (5) | 0.0291 (5) | 0.0015 (4) | 0.0104 (4) | 0.0040 (4) |
| O2 | 0.0339 (5) | 0.0213 (5) | 0.0341 (5) | 0.0023 (4) | 0.0159 (5) | 0.0076 (4) |
| O3 | 0.0212 (5) | 0.0296 (5) | 0.0295 (5) | 0.0038 (4) | 0.0127 (4) | 0.0069 (4) |
| O4 | 0.0223 (5) | 0.0260 (5) | 0.0278 (5) | 0.0000 (4) | 0.0085 (4) | −0.0035 (4) |
| O5 | 0.0274 (5) | 0.0199 (5) | 0.0270 (5) | −0.0007 (4) | 0.0145 (4) | −0.0035 (4) |
| O6 | 0.0228 (5) | 0.0260 (5) | 0.0319 (5) | −0.0039 (4) | 0.0116 (4) | −0.0081 (4) |
| N1 | 0.0240 (5) | 0.0190 (5) | 0.0183 (5) | −0.0006 (4) | 0.0107 (5) | 0.0009 (4) |
| N2 | 0.0236 (5) | 0.0187 (5) | 0.0180 (5) | 0.0017 (4) | 0.0103 (4) | 0.0004 (4) |
| C1 | 0.0280 (7) | 0.0202 (6) | 0.0213 (6) | 0.0012 (5) | 0.0131 (6) | 0.0010 (5) |
| C2 | 0.0209 (6) | 0.0179 (6) | 0.0209 (6) | −0.0006 (5) | 0.0106 (5) | 0.0013 (5) |
| C3 | 0.0281 (7) | 0.0239 (7) | 0.0228 (7) | 0.0030 (5) | 0.0144 (6) | 0.0004 (5) |
| C4 | 0.0368 (8) | 0.0201 (7) | 0.0310 (8) | 0.0052 (6) | 0.0199 (7) | 0.0015 (6) |
| C5 | 0.0344 (8) | 0.0219 (7) | 0.0297 (7) | 0.0059 (6) | 0.0173 (6) | 0.0062 (6) |
| C6 | 0.0327 (7) | 0.0226 (7) | 0.0222 (7) | 0.0031 (6) | 0.0156 (6) | 0.0032 (5) |
| C7 | 0.0202 (6) | 0.0199 (6) | 0.0204 (6) | 0.0027 (5) | 0.0101 (5) | 0.0008 (5) |
| C8 | 0.0225 (6) | 0.0233 (6) | 0.0182 (6) | −0.0015 (5) | 0.0089 (5) | 0.0009 (5) |
| C9 | 0.0229 (6) | 0.0219 (6) | 0.0168 (6) | −0.0020 (5) | 0.0111 (5) | −0.0024 (5) |
| C10 | 0.0218 (6) | 0.0234 (7) | 0.0174 (6) | −0.0015 (5) | 0.0099 (5) | −0.0028 (5) |
| C11 | 0.0262 (7) | 0.0198 (6) | 0.0201 (6) | −0.0008 (5) | 0.0127 (6) | −0.0031 (5) |
| C12 | 0.0294 (7) | 0.0191 (6) | 0.0253 (7) | −0.0019 (5) | 0.0171 (6) | −0.0028 (5) |
| C13 | 0.0228 (7) | 0.0248 (7) | 0.0251 (7) | −0.0021 (5) | 0.0141 (6) | −0.0035 (5) |
| C14 | 0.0215 (6) | 0.0232 (6) | 0.0182 (6) | 0.0026 (5) | 0.0106 (5) | −0.0010 (5) |
| C15 | 0.0294 (7) | 0.0210 (7) | 0.0217 (6) | −0.0002 (5) | 0.0136 (6) | −0.0024 (5) |
| C16 | 0.0412 (8) | 0.0257 (7) | 0.0366 (8) | 0.0081 (6) | 0.0183 (7) | 0.0110 (6) |
| C17 | 0.0244 (7) | 0.0228 (7) | 0.0168 (6) | 0.0033 (5) | 0.0087 (5) | 0.0006 (5) |
| C18 | 0.0230 (6) | 0.0204 (6) | 0.0164 (6) | 0.0018 (5) | 0.0109 (5) | 0.0026 (5) |
| C19 | 0.0191 (6) | 0.0227 (6) | 0.0162 (6) | 0.0015 (5) | 0.0092 (5) | 0.0040 (5) |
| C20 | 0.0236 (6) | 0.0202 (6) | 0.0180 (6) | −0.0003 (5) | 0.0116 (5) | 0.0035 (5) |
| C21 | 0.0242 (7) | 0.0194 (6) | 0.0255 (7) | 0.0027 (5) | 0.0137 (6) | 0.0024 (5) |
| C22 | 0.0193 (6) | 0.0245 (7) | 0.0274 (7) | 0.0011 (5) | 0.0109 (6) | 0.0022 (5) |
| C23 | 0.0234 (6) | 0.0221 (6) | 0.0190 (6) | −0.0035 (5) | 0.0108 (5) | −0.0001 (5) |
| C24 | 0.0258 (7) | 0.0200 (6) | 0.0165 (6) | 0.0030 (5) | 0.0106 (5) | 0.0040 (5) |
| C25 | 0.0338 (7) | 0.0207 (7) | 0.0276 (7) | −0.0019 (6) | 0.0145 (6) | −0.0046 (5) |
| O1—C15 | 1.2075 (17) | C7—H7 | 0.96 |
| O2—C15 | 1.3519 (19) | C8—C9 | 1.509 (2) |
| O2—C16 | 1.4432 (16) | C8—H8a | 0.96 |
| O3—C14 | 1.3578 (14) | C8—H8b | 0.96 |
| O3—H3 | 0.90 (2) | C9—C10 | 1.3812 (16) |
| O4—C24 | 1.2105 (17) | C9—C14 | 1.4088 (19) |
| O5—C24 | 1.3488 (19) | C10—C11 | 1.393 (2) |
| O5—C25 | 1.4426 (15) | C10—H10 | 0.96 |
| O6—C23 | 1.3595 (14) | C11—C12 | 1.394 (2) |
| O6—H6 | 0.87 (2) | C11—C15 | 1.4791 (16) |
| N1—C1 | 1.484 (2) | C12—C13 | 1.3828 (16) |
| N1—C2 | 1.4732 (17) | C12—H12 | 0.96 |
| N1—C8 | 1.4686 (15) | C13—C14 | 1.389 (2) |
| N2—C1 | 1.480 (2) | C13—H13 | 0.96 |
| N2—C7 | 1.4741 (18) | C16—H16a | 0.96 |
| N2—C17 | 1.4775 (16) | C16—H16b | 0.96 |
| C1—H1a | 0.96 | C16—H16c | 0.96 |
| C1—H1b | 0.96 | C17—C18 | 1.511 (2) |
| C2—C3 | 1.515 (2) | C17—H17a | 0.96 |
| C2—C7 | 1.5081 (19) | C17—H17b | 0.96 |
| C2—H2 | 0.96 | C18—C19 | 1.3850 (16) |
| C3—C4 | 1.535 (2) | C18—C23 | 1.4021 (18) |
| C3—H3a | 0.96 | C19—C20 | 1.391 (2) |
| C3—H3b | 0.96 | C19—H19 | 0.96 |
| C4—C5 | 1.531 (2) | C20—C21 | 1.3951 (18) |
| C4—H4a | 0.96 | C20—C24 | 1.4763 (16) |
| C4—H4b | 0.96 | C21—C22 | 1.3804 (17) |
| C5—C6 | 1.533 (2) | C21—H21 | 0.96 |
| C5—H5a | 0.96 | C22—C23 | 1.390 (2) |
| C5—H5b | 0.96 | C22—H22 | 0.96 |
| C6—C7 | 1.515 (2) | C25—H25a | 0.96 |
| C6—H6a | 0.96 | C25—H25b | 0.96 |
| C6—H6b | 0.96 | C25—H25c | 0.96 |
| C15—O2—C16 | 115.40 (11) | C8—C9—C14 | 120.41 (10) |
| C14—O3—H3 | 103.5 (11) | C10—C9—C14 | 118.31 (13) |
| C24—O5—C25 | 115.23 (11) | C9—C10—C11 | 121.95 (13) |
| C23—O6—H6 | 104.1 (11) | C9—C10—H10 | 119.0222 |
| C1—N1—C2 | 106.36 (12) | C11—C10—H10 | 119.0236 |
| C1—N1—C8 | 113.53 (10) | C10—C11—C12 | 118.98 (11) |
| C2—N1—C8 | 114.66 (9) | C10—C11—C15 | 117.78 (12) |
| C1—N2—C7 | 103.68 (13) | C12—C11—C15 | 123.23 (13) |
| C1—N2—C17 | 112.66 (10) | C11—C12—C13 | 120.07 (14) |
| C7—N2—C17 | 112.18 (9) | C11—C12—H12 | 119.9668 |
| N1—C1—N2 | 105.84 (10) | C13—C12—H12 | 119.9653 |
| N1—C1—H1a | 109.4722 | C12—C13—C14 | 120.53 (13) |
| N1—C1—H1b | 109.4722 | C12—C13—H13 | 119.7345 |
| N2—C1—H1a | 109.4704 | C14—C13—H13 | 119.7351 |
| N2—C1—H1b | 109.4705 | O3—C14—C9 | 121.21 (12) |
| H1a—C1—H1b | 112.8746 | O3—C14—C13 | 118.64 (12) |
| N1—C2—C3 | 116.58 (14) | C9—C14—C13 | 120.14 (11) |
| N1—C2—C7 | 100.87 (10) | O1—C15—O2 | 122.75 (11) |
| N1—C2—H2 | 111.3309 | O1—C15—C11 | 124.71 (14) |
| C3—C2—C7 | 111.32 (10) | O2—C15—C11 | 112.54 (12) |
| C3—C2—H2 | 100.891 | O2—C16—H16a | 109.472 |
| C7—C2—H2 | 116.5959 | O2—C16—H16b | 109.4708 |
| C2—C3—C4 | 108.75 (15) | O2—C16—H16c | 109.4708 |
| C2—C3—H3a | 109.472 | H16a—C16—H16b | 109.4716 |
| C2—C3—H3b | 109.4708 | H16a—C16—H16c | 109.4711 |
| C4—C3—H3a | 109.4717 | H16b—C16—H16c | 109.471 |
| C4—C3—H3b | 109.471 | N2—C17—C18 | 112.97 (9) |
| H3a—C3—H3b | 110.1798 | N2—C17—H17a | 109.4721 |
| C3—C4—C5 | 112.91 (11) | N2—C17—H17b | 109.469 |
| C3—C4—H4a | 109.4727 | C18—C17—H17a | 109.4721 |
| C3—C4—H4b | 109.4709 | C18—C17—H17b | 109.471 |
| C5—C4—H4a | 109.4714 | H17a—C17—H17b | 105.728 |
| C5—C4—H4b | 109.4703 | C17—C18—C19 | 120.39 (11) |
| H4a—C4—H4b | 105.7947 | C17—C18—C23 | 121.45 (10) |
| C4—C5—C6 | 112.36 (11) | C19—C18—C23 | 118.06 (13) |
| C4—C5—H5a | 109.4713 | C18—C19—C20 | 121.81 (12) |
| C4—C5—H5b | 109.4717 | C18—C19—H19 | 119.0941 |
| C6—C5—H5a | 109.4708 | C20—C19—H19 | 119.0943 |
| C6—C5—H5b | 109.4712 | C19—C20—C21 | 119.18 (11) |
| H5a—C5—H5b | 106.4244 | C19—C20—C24 | 118.18 (12) |
| C5—C6—C7 | 107.28 (15) | C21—C20—C24 | 122.60 (13) |
| C5—C6—H6a | 109.4711 | C20—C21—C22 | 119.93 (13) |
| C5—C6—H6b | 109.4712 | C20—C21—H21 | 120.0335 |
| C7—C6—H6a | 109.4714 | C22—C21—H21 | 120.0348 |
| C7—C6—H6b | 109.4712 | C21—C22—C23 | 120.34 (12) |
| H6a—C6—H6b | 111.5736 | C21—C22—H22 | 119.8287 |
| N2—C7—C2 | 101.53 (9) | C23—C22—H22 | 119.8289 |
| N2—C7—C6 | 118.45 (15) | O6—C23—C18 | 121.67 (13) |
| N2—C7—H7 | 109.7793 | O6—C23—C22 | 117.68 (11) |
| C2—C7—C6 | 111.47 (10) | C18—C23—C22 | 120.66 (11) |
| C2—C7—H7 | 116.9848 | O4—C24—O5 | 122.57 (11) |
| C6—C7—H7 | 99.4758 | O4—C24—C20 | 124.81 (14) |
| N1—C8—C9 | 111.57 (9) | O5—C24—C20 | 112.61 (12) |
| N1—C8—H8a | 109.4706 | O5—C25—H25a | 109.4719 |
| N1—C8—H8b | 109.4706 | O5—C25—H25b | 109.4705 |
| C9—C8—H8a | 109.4711 | O5—C25—H25c | 109.4708 |
| C9—C8—H8b | 109.4718 | H25a—C25—H25b | 109.4709 |
| H8a—C8—H8b | 107.2874 | H25a—C25—H25c | 109.472 |
| C8—C9—C10 | 121.21 (12) | H25b—C25—H25c | 109.4712 |
| C10—C11—C15—O1 | 1.3 (2) | C19—C20—C24—O4 | −10.1 (2) |
| H··· | ||||
| O3—H3···N1 | 0.90 (2) | 1.80 (2) | 2.6383 (18) | 154.3 (16) |
| O6—H6···N2 | 0.87 (2) | 1.88 (2) | 2.6814 (18) | 153.0 (18) |
| C2—H2···O1i | 0.96 | 2.57 | 3.414 (2) | 146 |
| C4—H4b···O1i | 0.96 | 2.58 | 3.353 (2) | 137 |
| C16—H16c···O6ii | 0.96 | 2.59 | 3.350 (2) | 136 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯N1 | 0.90 (2) | 1.80 (2) | 2.6383 (18) | 154.3 (16) |
| O6—H6⋯N2 | 0.87 (2) | 1.88 (2) | 2.6814 (18) | 153.0 (18) |
| C2—H2⋯O1i | 0.96 | 2.57 | 3.414 (2) | 146 |
| C4—H4 | 0.96 | 2.58 | 3.353 (2) | 137 |
| C16—H16 | 0.96 | 2.59 | 3.350 (2) | 136 |
Symmetry codes: (i) ; (ii) .