Literature DB >> 22219920

(5E)-5-(2,4-Dichloro-benzyl-idene)-2-(piperidin-1-yl)-1,3-thia-zol-4(5H)-one.

Hoong-Kun Fun, Madhukar Hemamalini, Prajwal L Lobo, D Jagadeesh Prasad, Boja Poojary.   

Abstract

In the title compound, C(15)H(14)Cl(2)N(2)OS, the piperidine ring adopts a chair conformation. The dihedral angle between the thia-zolidine ring and the dichloro-benzene ring is 9.30 (4)°; this near coplanar conformation is stabilized by the formation of an intra-molecular C-H⋯S hydrogen bond, which generates an S(6) ring. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, forming [001] chains. Weak π-π inter-actions [centroid-centroid separation = 3.5460 (5) Å] consolidate the structure.

Entities:  

Year:  2011        PMID: 22219920      PMCID: PMC3247615          DOI: 10.1107/S1600536811040785

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and properties of the 4-thia­zolidinone ring system, see: Lesyk & Zimenkovsky (2004 ▶); Lesyk et al. (2007 ▶); Havrylyuk et al. (2009 ▶); Ahn et al. (2006 ▶); Park et al. (2008 ▶); Geronikaki et al. (2008 ▶); Zimenkovsky et al. (2005 ▶). For ring puckering, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C15H14Cl2N2OS M = 341.24 Monoclinic, a = 28.5303 (3) Å b = 7.4915 (1) Å c = 15.4789 (2) Å β = 116.407 (1)° V = 2963.17 (6) Å3 Z = 8 Mo Kα radiation μ = 0.58 mm−1 T = 100 K 0.44 × 0.25 × 0.13 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.783, T max = 0.928 46944 measured reflections 6673 independent reflections 5955 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.074 S = 1.03 6673 reflections 190 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811040785/hb6435sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811040785/hb6435Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811040785/hb6435Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14Cl2N2OSF(000) = 1408
Mr = 341.24Dx = 1.530 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9844 reflections
a = 28.5303 (3) Åθ = 2.7–35.2°
b = 7.4915 (1) ŵ = 0.58 mm1
c = 15.4789 (2) ÅT = 100 K
β = 116.407 (1)°Block, brown
V = 2963.17 (6) Å30.44 × 0.25 × 0.13 mm
Z = 8
Bruker SMART APEXII CCD diffractometer6673 independent reflections
Radiation source: fine-focus sealed tube5955 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 35.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −45→46
Tmin = 0.783, Tmax = 0.928k = −12→12
46944 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0364P)2 + 1.7424P] where P = (Fo2 + 2Fc2)/3
6673 reflections(Δ/σ)max = 0.002
190 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.430128 (8)0.28966 (3)0.729616 (15)0.02400 (5)
Cl20.269296 (8)0.51920 (3)0.790208 (13)0.02382 (5)
S10.176998 (7)0.57324 (3)0.374212 (12)0.01596 (4)
O10.11470 (2)0.76041 (9)0.52929 (4)0.02178 (12)
N10.09082 (3)0.72148 (9)0.36763 (5)0.01686 (11)
N20.08873 (3)0.66216 (10)0.21783 (4)0.01825 (12)
C10.28809 (3)0.46653 (11)0.54975 (5)0.01796 (13)
H1A0.26880.48500.48220.022*
C20.33866 (3)0.40104 (11)0.58547 (6)0.01884 (13)
H2A0.35400.37740.54330.023*
C30.36659 (3)0.37051 (10)0.68400 (6)0.01726 (12)
C40.34481 (3)0.40355 (11)0.74672 (5)0.01740 (12)
H4A0.36390.37970.81380.021*
C50.29438 (3)0.47245 (10)0.70876 (5)0.01601 (12)
C60.26411 (3)0.50678 (10)0.60961 (5)0.01517 (12)
C70.21245 (3)0.58738 (10)0.57455 (5)0.01636 (12)
H7A0.20280.62210.62350.020*
C80.17611 (3)0.62056 (10)0.48355 (5)0.01523 (12)
C90.12450 (3)0.70822 (10)0.46399 (5)0.01629 (12)
C100.11223 (3)0.66071 (10)0.31348 (5)0.01553 (12)
C110.03308 (3)0.71217 (13)0.16554 (6)0.02211 (15)
H11A0.02270.77960.20930.027*
H11B0.01140.60270.14500.027*
C120.02289 (3)0.82567 (13)0.07750 (6)0.02274 (15)
H12A0.03920.94440.09880.027*
H12B−0.01530.84340.03940.027*
C130.04478 (3)0.73902 (13)0.01359 (6)0.02228 (15)
H13A0.02570.6267−0.01410.027*
H13B0.03980.8202−0.04030.027*
C140.10279 (3)0.69973 (12)0.07298 (6)0.01982 (14)
H14A0.12210.81330.09610.024*
H14B0.11650.63930.03200.024*
C150.11176 (4)0.58124 (12)0.15908 (6)0.02219 (15)
H15A0.09580.46270.13590.027*
H15B0.14980.56400.19910.027*
U11U22U33U12U13U23
Cl10.01844 (8)0.02974 (10)0.02435 (9)0.00495 (7)0.01001 (7)0.00259 (7)
Cl20.01920 (9)0.04116 (12)0.01293 (7)0.00453 (7)0.00879 (6)0.00332 (7)
S10.01586 (8)0.02028 (8)0.01193 (7)0.00101 (6)0.00634 (6)−0.00006 (6)
O10.0210 (3)0.0317 (3)0.0141 (2)0.0032 (2)0.0092 (2)−0.0011 (2)
N10.0159 (3)0.0229 (3)0.0124 (2)0.0001 (2)0.0069 (2)0.0001 (2)
N20.0163 (3)0.0272 (3)0.0112 (2)0.0023 (2)0.0060 (2)0.0005 (2)
C10.0199 (3)0.0215 (3)0.0134 (3)0.0007 (3)0.0083 (2)0.0006 (2)
C20.0208 (3)0.0212 (3)0.0169 (3)0.0014 (3)0.0105 (3)0.0005 (2)
C30.0165 (3)0.0178 (3)0.0180 (3)0.0004 (2)0.0081 (2)0.0008 (2)
C40.0167 (3)0.0204 (3)0.0146 (3)−0.0003 (2)0.0064 (2)0.0014 (2)
C50.0164 (3)0.0203 (3)0.0125 (3)−0.0014 (2)0.0075 (2)0.0005 (2)
C60.0158 (3)0.0175 (3)0.0126 (3)−0.0016 (2)0.0066 (2)0.0004 (2)
C70.0166 (3)0.0201 (3)0.0127 (3)−0.0010 (2)0.0068 (2)0.0003 (2)
C80.0159 (3)0.0178 (3)0.0126 (3)−0.0014 (2)0.0068 (2)−0.0002 (2)
C90.0164 (3)0.0196 (3)0.0133 (3)−0.0010 (2)0.0070 (2)0.0001 (2)
C100.0150 (3)0.0189 (3)0.0125 (3)−0.0008 (2)0.0060 (2)0.0003 (2)
C110.0155 (3)0.0365 (4)0.0139 (3)0.0009 (3)0.0061 (2)0.0022 (3)
C120.0190 (3)0.0339 (4)0.0148 (3)0.0050 (3)0.0070 (3)0.0033 (3)
C130.0230 (4)0.0303 (4)0.0133 (3)0.0015 (3)0.0078 (3)0.0010 (3)
C140.0220 (3)0.0245 (4)0.0159 (3)0.0008 (3)0.0111 (3)−0.0006 (3)
C150.0252 (4)0.0291 (4)0.0138 (3)0.0072 (3)0.0100 (3)0.0015 (3)
Cl1—C31.7357 (8)C6—C71.4560 (11)
Cl2—C51.7397 (7)C7—C81.3498 (10)
S1—C81.7402 (7)C7—H7A0.9500
S1—C101.7839 (8)C8—C91.5148 (11)
O1—C91.2265 (9)C11—C121.5207 (12)
N1—C101.3186 (10)C11—H11A0.9900
N1—C91.3722 (10)C11—H11B0.9900
N2—C101.3261 (9)C12—C131.5296 (12)
N2—C151.4690 (10)C12—H12A0.9900
N2—C111.4743 (11)C12—H12B0.9900
C1—C21.3851 (11)C13—C141.5223 (12)
C1—C61.4075 (10)C13—H13A0.9900
C1—H1A0.9500C13—H13B0.9900
C2—C31.3900 (11)C14—C151.5252 (12)
C2—H2A0.9500C14—H14A0.9900
C3—C41.3880 (11)C14—H14B0.9900
C4—C51.3893 (11)C15—H15A0.9900
C4—H4A0.9500C15—H15B0.9900
C5—C61.4102 (10)
C8—S1—C1088.74 (3)N1—C10—S1117.13 (5)
C10—N1—C9111.56 (6)N2—C10—S1118.84 (6)
C10—N2—C15122.99 (7)N2—C11—C12111.35 (7)
C10—N2—C11120.09 (6)N2—C11—H11A109.4
C15—N2—C11115.73 (6)C12—C11—H11A109.4
C2—C1—C6122.55 (7)N2—C11—H11B109.4
C2—C1—H1A118.7C12—C11—H11B109.4
C6—C1—H1A118.7H11A—C11—H11B108.0
C1—C2—C3118.91 (7)C11—C12—C13111.84 (7)
C1—C2—H2A120.5C11—C12—H12A109.2
C3—C2—H2A120.5C13—C12—H12A109.2
C4—C3—C2121.44 (7)C11—C12—H12B109.2
C4—C3—Cl1119.28 (6)C13—C12—H12B109.2
C2—C3—Cl1119.29 (6)H12A—C12—H12B107.9
C3—C4—C5118.17 (7)C14—C13—C12109.79 (6)
C3—C4—H4A120.9C14—C13—H13A109.7
C5—C4—H4A120.9C12—C13—H13A109.7
C4—C5—C6123.08 (7)C14—C13—H13B109.7
C4—C5—Cl2116.79 (5)C12—C13—H13B109.7
C6—C5—Cl2120.12 (6)H13A—C13—H13B108.2
C1—C6—C5115.83 (7)C13—C14—C15110.80 (7)
C1—C6—C7123.46 (7)C13—C14—H14A109.5
C5—C6—C7120.64 (7)C15—C14—H14A109.5
C8—C7—C6130.21 (7)C13—C14—H14B109.5
C8—C7—H7A114.9C15—C14—H14B109.5
C6—C7—H7A114.9H14A—C14—H14B108.1
C7—C8—C9121.03 (7)N2—C15—C14110.69 (7)
C7—C8—S1129.85 (6)N2—C15—H15A109.5
C9—C8—S1109.10 (5)C14—C15—H15A109.5
O1—C9—N1124.51 (7)N2—C15—H15B109.5
O1—C9—C8122.08 (7)C14—C15—H15B109.5
N1—C9—C8113.41 (6)H15A—C15—H15B108.1
N1—C10—N2124.03 (7)
C6—C1—C2—C31.25 (12)C7—C8—C9—O13.74 (12)
C1—C2—C3—C40.26 (12)S1—C8—C9—O1−177.51 (7)
C1—C2—C3—Cl1−179.63 (6)C7—C8—C9—N1−175.99 (7)
C2—C3—C4—C5−1.49 (12)S1—C8—C9—N12.77 (8)
Cl1—C3—C4—C5178.41 (6)C9—N1—C10—N2−178.19 (8)
C3—C4—C5—C61.30 (12)C9—N1—C10—S11.36 (9)
C3—C4—C5—Cl2−177.86 (6)C15—N2—C10—N1−175.15 (8)
C2—C1—C6—C5−1.41 (12)C11—N2—C10—N1−8.17 (12)
C2—C1—C6—C7175.53 (8)C15—N2—C10—S15.31 (11)
C4—C5—C6—C10.10 (11)C11—N2—C10—S1172.29 (6)
Cl2—C5—C6—C1179.24 (6)C8—S1—C10—N10.25 (7)
C4—C5—C6—C7−176.93 (7)C8—S1—C10—N2179.82 (7)
Cl2—C5—C6—C72.21 (10)C10—N2—C11—C12140.61 (8)
C1—C6—C7—C87.99 (13)C15—N2—C11—C12−51.50 (10)
C5—C6—C7—C8−175.21 (8)N2—C11—C12—C1351.51 (10)
C6—C7—C8—C9−179.51 (7)C11—C12—C13—C14−55.21 (10)
C6—C7—C8—S12.03 (13)C12—C13—C14—C1556.91 (10)
C10—S1—C8—C7177.01 (8)C10—N2—C15—C14−139.08 (8)
C10—S1—C8—C9−1.60 (5)C11—N2—C15—C1453.41 (10)
C10—N1—C9—O1177.67 (8)C13—C14—C15—N2−55.37 (9)
C10—N1—C9—C8−2.61 (9)
D—H···AD—HH···AD···AD—H···A
C1—H1A···S10.952.493.2260 (8)134
C4—H4A···O1i0.952.403.3080 (9)160
C15—H15A···O1ii0.992.573.2778 (11)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯S10.952.493.2260 (8)134
C4—H4A⋯O1i0.952.403.3080 (9)160
C15—H15A⋯O1ii0.992.573.2778 (11)129

Symmetry codes: (i) ; (ii) .

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