Literature DB >> 22219897

(E)-N'-{7-Meth-oxy-spiro-[chromeno[4,3-d]thia-zole-4,1'-cyclo-hexa-n]-2-yl}-N,N-dimethyl-acetimidamide.

Kamini Kapoor, Vivek K Gupta, Rajni Kant, Poorvesh M Vyas, Mihir J Joshi, Kalpesh M Menpara, Kartik D Ladva.   

Abstract

In the chromenothia-zole ring system of the title mol-ecule, C(20)H(25)N(3)O(2)S, the pyran ring is in a half-chair conformation. The dihedral angle between the thia-zole and benzene rings is 14.78 (6)°. The cyclo-hexane ring is in a chair conformation. The crystal structure is stabilized by weak inter-molecular C-H⋯N and C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22219897      PMCID: PMC3247592          DOI: 10.1107/S1600536811040359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of heterocyclic compounds containing nitro­gen and sulfur, see: Bishayee et al. (1997 ▶); Cruz et al. (1995 ▶); Chitamber & Wereley (1997 ▶). For the biological activity of thiazoles, see: Pawar et al. (2009 ▶). Schiff bases and acetamidine play an important role in many biological processes and are of great importance for the preparation of various pharmaceuticals, see: More et al. (2001 ▶); Sutariya et al. (2007 ▶); Murza et al. (1999 ▶); Dong et al. (2006 ▶); Jayashree et al. (2005 ▶); Modi et al. (1971 ▶); Vicini et al. (2003 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Duax & Norton (1975 ▶).

Experimental

Crystal data

C20H25N3O2S M = 371.49 Monoclinic, a = 9.2510 (2) Å b = 20.0273 (4) Å c = 10.7301 (2) Å β = 90.840 (2)° V = 1987.78 (7) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.3 × 0.2 × 0.1 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.892, T max = 1.000 56290 measured reflections 3482 independent reflections 2835 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.113 S = 1.02 3482 reflections 291 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and PARST (Nardelli, 1995 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811040359/lh5340sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811040359/lh5340Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H25N3O2SF(000) = 792
Mr = 371.49Dx = 1.241 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 24440 reflections
a = 9.2510 (2) Åθ = 3.5–29.0°
b = 20.0273 (4) ŵ = 0.18 mm1
c = 10.7301 (2) ÅT = 293 K
β = 90.840 (2)°Plate, light-brown
V = 1987.78 (7) Å30.3 × 0.2 × 0.1 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire3 diffractometer3482 independent reflections
Radiation source: fine-focus sealed tube2835 reflections with I > 2σ(I)
graphiteRint = 0.041
Detector resolution: 16.1049 pixels mm-1θmax = 25.0°, θmin = 3.5°
ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −23→23
Tmin = 0.892, Tmax = 1.000l = −12→12
56290 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0521P)2 + 0.884P] where P = (Fo2 + 2Fc2)/3
3482 reflections(Δ/σ)max = 0.001
291 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.33437 (18)0.18039 (8)0.41748 (15)0.0474 (4)
C20.2587 (2)0.12626 (10)0.39594 (19)0.0467 (5)
C3A0.4732 (2)0.12918 (9)0.26463 (18)0.0428 (5)
S30.33236 (6)0.07336 (3)0.28200 (5)0.05248 (19)
C40.6032 (2)0.12315 (9)0.18332 (17)0.0410 (4)
O50.64694 (14)0.19099 (6)0.14928 (11)0.0428 (3)
C5A0.65071 (19)0.23902 (8)0.24074 (16)0.0368 (4)
C60.7445 (2)0.29214 (9)0.22330 (18)0.0395 (4)
C70.7481 (2)0.34279 (9)0.3113 (2)0.0459 (5)
C80.6590 (3)0.34051 (11)0.4146 (2)0.0551 (6)
C90.5632 (3)0.28851 (11)0.4276 (2)0.0539 (5)
C9A0.5568 (2)0.23671 (9)0.34111 (17)0.0419 (4)
C9B0.4543 (2)0.18148 (9)0.34258 (17)0.0421 (4)
O100.83754 (17)0.39732 (7)0.30446 (15)0.0619 (4)
C110.9325 (3)0.40072 (13)0.2026 (3)0.0766 (8)
H11A0.99270.36170.20200.115*
H11B0.99190.43980.21040.115*
H11C0.87720.40290.12620.115*
C120.5715 (3)0.08891 (13)0.0596 (2)0.0562 (6)
C130.7053 (3)0.08381 (14)−0.0209 (3)0.0693 (7)
C140.8293 (3)0.05035 (14)0.0475 (3)0.0818 (9)
C150.8642 (3)0.08530 (14)0.1699 (3)0.0693 (7)
C160.7304 (2)0.08994 (12)0.2511 (2)0.0535 (5)
N170.13926 (19)0.10532 (9)0.45830 (17)0.0537 (5)
C180.0370 (2)0.14748 (11)0.4842 (2)0.0501 (5)
C190.0168 (3)0.21331 (12)0.4193 (2)0.0657 (6)
H19A0.07940.21550.34890.099*
H19B0.04000.24890.47610.099*
H19C−0.08180.21760.39150.099*
N20−0.06057 (19)0.12955 (11)0.56983 (19)0.0650 (5)
C21−0.1802 (3)0.17228 (18)0.6067 (3)0.0986 (11)
H21A−0.16140.21740.58120.148*
H21B−0.19000.17070.69560.148*
H21C−0.26800.15690.56750.148*
C22−0.0438 (4)0.06674 (15)0.6362 (3)0.0923 (10)
H22A−0.10230.03310.59630.139*
H22B−0.07390.07230.72080.139*
H22C0.05580.05330.63520.139*
H610.803 (2)0.2918 (9)0.1512 (18)0.044 (5)*
H810.664 (2)0.3751 (11)0.477 (2)0.058 (6)*
H910.499 (3)0.2877 (11)0.494 (2)0.064 (7)*
H1610.698 (2)0.0457 (12)0.275 (2)0.061 (6)*
H1620.752 (2)0.1132 (11)0.328 (2)0.058 (6)*
H1210.537 (2)0.0441 (12)0.079 (2)0.061 (6)*
H1220.493 (3)0.1108 (13)0.017 (2)0.076 (8)*
H1310.679 (3)0.0603 (13)−0.093 (3)0.076 (8)*
H1320.734 (3)0.1291 (13)−0.046 (2)0.063 (7)*
H1410.913 (3)0.0497 (14)−0.006 (3)0.092 (9)*
H1420.801 (3)0.0054 (16)0.064 (3)0.093 (9)*
H1510.942 (3)0.0618 (14)0.216 (3)0.092 (9)*
H1520.897 (3)0.1321 (13)0.153 (2)0.068 (7)*
U11U22U33U12U13U23
N10.0512 (10)0.0403 (9)0.0512 (10)−0.0060 (8)0.0149 (8)−0.0058 (7)
C20.0484 (11)0.0394 (11)0.0525 (12)−0.0010 (9)0.0098 (9)−0.0008 (9)
C3A0.0480 (11)0.0324 (10)0.0482 (11)−0.0054 (8)0.0072 (9)−0.0044 (8)
S30.0512 (3)0.0383 (3)0.0684 (4)−0.0089 (2)0.0148 (3)−0.0121 (2)
C40.0488 (11)0.0285 (9)0.0460 (11)−0.0059 (8)0.0086 (8)−0.0056 (8)
O50.0580 (8)0.0311 (7)0.0395 (7)−0.0040 (6)0.0085 (6)−0.0047 (5)
C5A0.0429 (10)0.0281 (9)0.0393 (10)0.0018 (7)0.0003 (8)−0.0033 (7)
C60.0408 (10)0.0331 (10)0.0446 (11)0.0024 (8)0.0035 (8)0.0001 (8)
C70.0455 (11)0.0329 (10)0.0592 (12)−0.0027 (8)−0.0015 (9)−0.0045 (9)
C80.0649 (14)0.0389 (11)0.0617 (13)−0.0051 (10)0.0081 (11)−0.0193 (10)
C90.0628 (14)0.0459 (12)0.0534 (12)−0.0069 (10)0.0144 (11)−0.0144 (10)
C9A0.0479 (11)0.0340 (10)0.0438 (10)−0.0021 (8)0.0053 (8)−0.0050 (8)
C9B0.0475 (11)0.0362 (10)0.0428 (10)−0.0028 (8)0.0075 (8)−0.0027 (8)
O100.0637 (10)0.0431 (8)0.0791 (11)−0.0182 (7)0.0083 (8)−0.0145 (7)
C110.0684 (16)0.0602 (15)0.102 (2)−0.0289 (13)0.0216 (15)−0.0149 (14)
C120.0602 (14)0.0509 (14)0.0579 (13)−0.0119 (11)0.0102 (11)−0.0201 (11)
C130.0826 (18)0.0614 (16)0.0645 (16)−0.0119 (14)0.0242 (14)−0.0268 (13)
C140.0795 (19)0.0494 (15)0.118 (3)0.0057 (14)0.0509 (19)−0.0093 (15)
C150.0494 (14)0.0596 (16)0.099 (2)0.0071 (12)0.0135 (13)0.0161 (15)
C160.0531 (13)0.0411 (12)0.0665 (15)−0.0008 (10)0.0051 (11)0.0067 (11)
N170.0493 (10)0.0446 (10)0.0677 (11)−0.0064 (8)0.0177 (9)−0.0025 (9)
C180.0402 (11)0.0526 (12)0.0575 (12)−0.0095 (9)0.0004 (9)−0.0127 (10)
C190.0538 (13)0.0627 (15)0.0801 (16)0.0048 (11)−0.0125 (12)−0.0052 (13)
N200.0440 (10)0.0762 (14)0.0753 (13)−0.0106 (9)0.0150 (9)−0.0155 (11)
C210.0528 (16)0.137 (3)0.106 (2)0.0069 (17)0.0207 (15)−0.033 (2)
C220.092 (2)0.086 (2)0.100 (2)−0.0273 (17)0.0405 (18)0.0049 (17)
N1—C21.309 (3)C12—H1210.97 (2)
N1—C9B1.380 (2)C12—H1220.96 (3)
C2—N171.366 (2)C13—C141.510 (4)
C2—S31.762 (2)C13—H1310.94 (3)
C3A—C9B1.353 (3)C13—H1320.98 (2)
C3A—C41.501 (3)C14—C151.519 (4)
C3A—S31.7292 (19)C14—H1410.97 (3)
C4—O51.465 (2)C14—H1420.95 (3)
C4—C121.519 (3)C15—C161.527 (3)
C4—C161.526 (3)C15—H1510.98 (3)
O5—C5A1.374 (2)C15—H1521.00 (3)
C5A—C61.387 (3)C16—H1610.97 (2)
C5A—C9A1.394 (3)C16—H1620.97 (2)
C6—C71.386 (3)N17—C181.301 (3)
C6—H610.95 (2)C18—N201.346 (3)
C7—O101.373 (2)C18—C191.501 (3)
C7—C81.391 (3)C19—H19A0.9600
C8—C91.376 (3)C19—H19B0.9600
C8—H810.96 (2)C19—H19C0.9600
C9—C9A1.393 (3)N20—C221.452 (4)
C9—H910.94 (2)N20—C211.458 (3)
C9A—C9B1.457 (3)C21—H21A0.9600
O10—C111.414 (3)C21—H21B0.9600
C11—H11A0.9600C21—H21C0.9600
C11—H11B0.9600C22—H22A0.9600
C11—H11C0.9600C22—H22B0.9600
C12—C131.523 (3)C22—H22C0.9600
C2—N1—C9B110.04 (16)C14—C13—C12111.8 (2)
N1—C2—N17127.00 (18)C14—C13—H131111.6 (16)
N1—C2—S3114.16 (14)C12—C13—H131107.3 (16)
N17—C2—S3118.62 (15)C14—C13—H132109.5 (14)
C9B—C3A—C4122.24 (17)C12—C13—H132108.6 (14)
C9B—C3A—S3109.23 (14)H131—C13—H132108 (2)
C4—C3A—S3128.48 (14)C13—C14—C15111.5 (2)
C3A—S3—C289.18 (9)C13—C14—H141109.2 (17)
O5—C4—C3A107.26 (14)C15—C14—H141110.7 (16)
O5—C4—C12104.56 (16)C13—C14—H142107.4 (17)
C3A—C4—C12113.46 (17)C15—C14—H142109.4 (18)
O5—C4—C16108.01 (16)H141—C14—H142109 (2)
C3A—C4—C16112.13 (17)C14—C15—C16110.9 (2)
C12—C4—C16110.92 (18)C14—C15—H151110.9 (17)
C5A—O5—C4118.37 (13)C16—C15—H151109.5 (17)
O5—C5A—C6116.73 (16)C14—C15—H152109.6 (14)
O5—C5A—C9A121.25 (16)C16—C15—H152107.3 (14)
C6—C5A—C9A121.85 (16)H151—C15—H152109 (2)
C7—C6—C5A118.55 (18)C4—C16—C15112.4 (2)
C7—C6—H61123.5 (12)C4—C16—H161106.8 (13)
C5A—C6—H61117.9 (12)C15—C16—H161110.5 (13)
O10—C7—C6123.63 (18)C4—C16—H162110.4 (13)
O10—C7—C8115.69 (17)C15—C16—H162110.8 (13)
C6—C7—C8120.68 (18)H161—C16—H162105.7 (19)
C9—C8—C7119.71 (19)C18—N17—C2120.09 (18)
C9—C8—H81120.0 (13)N17—C18—N20118.0 (2)
C7—C8—H81120.3 (13)N17—C18—C19123.8 (2)
C8—C9—C9A121.1 (2)N20—C18—C19118.1 (2)
C8—C9—H91120.6 (14)C18—C19—H19A109.5
C9A—C9—H91118.2 (15)C18—C19—H19B109.5
C9—C9A—C5A118.01 (18)H19A—C19—H19B109.5
C9—C9A—C9B125.40 (18)C18—C19—H19C109.5
C5A—C9A—C9B116.51 (16)H19A—C19—H19C109.5
C3A—C9B—N1117.40 (17)H19B—C19—H19C109.5
C3A—C9B—C9A119.39 (17)C18—N20—C22119.9 (2)
N1—C9B—C9A123.18 (16)C18—N20—C21123.2 (2)
C7—O10—C11117.49 (17)C22—N20—C21116.8 (2)
O10—C11—H11A109.5N20—C21—H21A109.5
O10—C11—H11B109.5N20—C21—H21B109.5
H11A—C11—H11B109.5H21A—C21—H21B109.5
O10—C11—H11C109.5N20—C21—H21C109.5
H11A—C11—H11C109.5H21A—C21—H21C109.5
H11B—C11—H11C109.5H21B—C21—H21C109.5
C4—C12—C13112.2 (2)N20—C22—H22A109.5
C4—C12—H121106.7 (13)N20—C22—H22B109.5
C13—C12—H121109.2 (13)H22A—C22—H22B109.5
C4—C12—H122110.2 (16)N20—C22—H22C109.5
C13—C12—H122112.2 (16)H22A—C22—H22C109.5
H121—C12—H122106 (2)H22B—C22—H22C109.5
C9B—N1—C2—N17174.7 (2)C4—C3A—C9B—N1−176.95 (18)
C9B—N1—C2—S30.3 (2)S3—C3A—C9B—N10.5 (2)
C9B—C3A—S3—C2−0.26 (16)C4—C3A—C9B—C9A5.1 (3)
C4—C3A—S3—C2176.97 (19)S3—C3A—C9B—C9A−177.50 (15)
N1—C2—S3—C3A0.00 (17)C2—N1—C9B—C3A−0.5 (3)
N17—C2—S3—C3A−174.98 (18)C2—N1—C9B—C9A177.41 (18)
C9B—C3A—C4—O5−32.2 (3)C9—C9A—C9B—C3A−170.1 (2)
S3—C3A—C4—O5150.85 (15)C5A—C9A—C9B—C3A13.4 (3)
C9B—C3A—C4—C12−147.2 (2)C9—C9A—C9B—N112.1 (3)
S3—C3A—C4—C1235.9 (3)C5A—C9A—C9B—N1−164.47 (18)
C9B—C3A—C4—C1686.2 (2)C6—C7—O10—C11−1.2 (3)
S3—C3A—C4—C16−90.7 (2)C8—C7—O10—C11178.4 (2)
C3A—C4—O5—C5A44.4 (2)O5—C4—C12—C1363.2 (3)
C12—C4—O5—C5A165.17 (16)C3A—C4—C12—C13179.8 (2)
C16—C4—O5—C5A−76.6 (2)C16—C4—C12—C13−53.0 (3)
C4—O5—C5A—C6154.00 (16)C4—C12—C13—C1454.4 (3)
C4—O5—C5A—C9A−30.6 (2)C12—C13—C14—C15−55.2 (3)
O5—C5A—C6—C7177.88 (16)C13—C14—C15—C1655.1 (3)
C9A—C5A—C6—C72.6 (3)O5—C4—C16—C15−60.5 (2)
C5A—C6—C7—O10179.29 (18)C3A—C4—C16—C15−178.52 (19)
C5A—C6—C7—C8−0.3 (3)C12—C4—C16—C1553.5 (3)
O10—C7—C8—C9178.4 (2)C14—C15—C16—C4−54.7 (3)
C6—C7—C8—C9−2.0 (3)N1—C2—N17—C1845.0 (3)
C7—C8—C9—C9A2.1 (4)S3—C2—N17—C18−140.69 (18)
C8—C9—C9A—C5A0.1 (3)C2—N17—C18—N20−164.45 (19)
C8—C9—C9A—C9B−176.4 (2)C2—N17—C18—C1918.9 (3)
O5—C5A—C9A—C9−177.56 (18)N17—C18—N20—C224.1 (3)
C6—C5A—C9A—C9−2.4 (3)C19—C18—N20—C22−179.0 (2)
O5—C5A—C9A—C9B−0.7 (3)N17—C18—N20—C21−179.9 (2)
C6—C5A—C9A—C9B174.37 (17)C19—C18—N20—C21−3.1 (3)
D—H···AD—HH···AD···AD—H···A
C19—H19B···O5i0.962.413.335 (3)161
C6—H61···N1ii0.95 (2)2.59 (2)3.441 (3)149.3 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19B⋯O5i0.962.413.335 (3)161
C6—H61⋯N1ii0.95 (2)2.59 (2)3.441 (3)149.3 (15)

Symmetry codes: (i) ; (ii) .

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Authors:  T F Cruz; A Morgan; W Min
Journal:  Mol Cell Biochem       Date:  1995 Dec 6-20       Impact factor: 3.396

3.  Antitumor agents. Schiff bases from benzaldehyde nitrogen mustards and 2-phenyl-4-((3-amino-4-methoxy)phenyl)thiazole.

Authors:  J D Modi; S S Sarnis; C V Deliwala
Journal:  J Med Chem       Date:  1971-05       Impact factor: 7.446

4.  Vanadium-mediated chemoprotection against chemical hepatocarcinogenesis in rats: haematological and histological characteristics.

Authors:  A Bishayee; R Karmakar; A Mandal; S N Kundu; M Chatterjee
Journal:  Eur J Cancer Prev       Date:  1997-02       Impact factor: 2.497

5.  Resistance to the antitumor agent gallium nitrate in human leukemic cells is associated with decreased gallium/iron uptake, increased activity of iron regulatory protein-1, and decreased ferritin production.

Authors:  C R Chitambar; J P Wereley
Journal:  J Biol Chem       Date:  1997-05-02       Impact factor: 5.157

6.  Synthesis and biological evaluation of benzo[d]isothiazole, benzothiazole and thiazole Schiff bases.

Authors:  Paola Vicini; Athina Geronikaki; Matteo Incerti; Bernadetta Busonera; Graziella Poni; Carla Alba Cabras; Paolo La Colla
Journal:  Bioorg Med Chem       Date:  2003-11-03       Impact factor: 3.641

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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