Literature DB >> 22219892

(E)-2-{[2-(2-Hy-droxy-ethyl-amino)-ethyl-imino]-meth-yl}phenol.

Juan M Germán-Acacio1, Hugo Tlahuext, Herbert Höpfl.   

Abstract

The asymmetric unit of the title compound, C(11)H(16)N(2)O(2), contains two independent conformational isomers which show intra-molecular aromatic-imine O-H⋯N hydrogen bonds. In the crystal, neighboring mol-ecules are linked through inter-molecular aliphatic-aliphatic O-H⋯N, aliphatic-aromatic N-H⋯O and C-H⋯O inter-actions into hydrogen-bonded layers parallel to the ab plane.

Entities:  

Year:  2011        PMID: 22219892      PMCID: PMC3247587          DOI: 10.1107/S1600536811039997

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal structures of metal complexes with this ligand, see: Haber et al. (2003 ▶); Kenar et al. (2001 ▶); Li et al. (1988 ▶); Rajendiran et al. (2007 ▶). For supra­molecular assemblies with structurally related ligands, see: Barba et al. (2000 ▶); Fujita et al. (2008 ▶); Höpfl (2002 ▶); Severin (2009 ▶). For the tautomerism of salicyl­idene­imines, see: Domínguez et al. (2011 ▶); Fujiwara et al. (2009 ▶); Ogawa et al. (1998 ▶); Rodríguez et al. (2007 ▶).

Experimental

Crystal data

C11H16N2O2 M = 208.26 Orthorhombic, a = 7.0047 (11) Å b = 14.171 (2) Å c = 21.681 (3) Å V = 2152.1 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.45 × 0.08 × 0.07 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.786, T max = 0.994 12054 measured reflections 2677 independent reflections 2311 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.115 S = 1.14 2677 reflections 289 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039997/pk2347sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039997/pk2347Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039997/pk2347Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H16N2O2Dx = 1.286 Mg m3
Mr = 208.26Melting point: 358 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2547 reflections
a = 7.0047 (11) Åθ = 2.9–25.4°
b = 14.171 (2) ŵ = 0.09 mm1
c = 21.681 (3) ÅT = 100 K
V = 2152.1 (6) Å3Plate, yellow
Z = 80.45 × 0.08 × 0.07 mm
F(000) = 896
Bruker SMART CCD area-detector diffractometer2677 independent reflections
Radiation source: fine-focus sealed tube2311 reflections with I > 2σ(I)
graphiteRint = 0.052
φ and ω scansθmax = 27.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.786, Tmax = 0.994k = −9→18
12054 measured reflectionsl = −27→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0493P)2 + 0.4481P] where P = (Fo2 + 2Fc2)/3
2677 reflections(Δ/σ)max < 0.001
289 parametersΔρmax = 0.26 e Å3
6 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3350 (3)0.69081 (15)0.11061 (9)0.0234 (5)
H10.442 (2)0.674 (2)0.1244 (14)0.035*
O21.4419 (3)0.62189 (16)0.25568 (10)0.0298 (5)
H21.453 (6)0.5647 (7)0.2462 (17)0.045*
N10.6713 (3)0.62184 (17)0.12202 (11)0.0210 (5)
N21.0729 (3)0.69806 (18)0.22607 (11)0.0215 (6)
H2A1.161 (3)0.691 (2)0.1990 (11)0.032*
C10.3377 (4)0.6585 (2)0.05212 (13)0.0193 (6)
C20.5001 (4)0.61174 (19)0.02788 (13)0.0191 (6)
C30.4962 (4)0.5809 (2)−0.03349 (13)0.0224 (6)
H30.60440.5495−0.05020.027*
C40.3373 (5)0.5954 (2)−0.07020 (14)0.0273 (7)
H40.33670.5744−0.11180.033*
C50.1788 (5)0.6408 (2)−0.04570 (14)0.0280 (7)
H50.06920.6505−0.07070.034*
C60.1789 (4)0.6719 (2)0.01469 (14)0.0231 (6)
H60.06930.70290.03080.028*
C70.6692 (4)0.59821 (19)0.06535 (13)0.0194 (6)
H70.78020.57130.04740.023*
C80.8463 (4)0.6083 (2)0.15798 (13)0.0232 (6)
H8A0.95440.59460.13000.028*
H8B0.83070.55400.18630.028*
C90.8875 (4)0.6970 (2)0.19473 (14)0.0236 (7)
H9A0.88110.75190.16650.028*
H9B0.78580.70500.22600.028*
C101.0972 (4)0.6245 (2)0.27303 (13)0.0251 (7)
H10A1.07820.56160.25420.030*
H10B1.00070.63270.30600.030*
C111.2954 (4)0.6306 (2)0.30039 (14)0.0289 (7)
H11A1.30940.69200.32180.035*
H11B1.31060.58010.33150.035*
O31−0.2420 (3)0.35742 (16)0.10565 (9)0.0252 (5)
H31−0.134 (2)0.375 (2)0.1175 (15)0.038*
O320.8773 (3)0.39234 (15)0.25880 (11)0.0279 (5)
H320.897 (5)0.3345 (6)0.2532 (17)0.042*
N310.1079 (3)0.41785 (17)0.10613 (11)0.0207 (5)
N320.4908 (3)0.42869 (18)0.22487 (11)0.0196 (5)
H32A0.586 (3)0.423 (2)0.2002 (12)0.029*
C31−0.2312 (4)0.3602 (2)0.04357 (13)0.0204 (6)
C32−0.0647 (4)0.3916 (2)0.01297 (13)0.0198 (6)
C33−0.0628 (4)0.3926 (2)−0.05144 (13)0.0239 (7)
H330.04790.4145−0.07230.029*
C34−0.2171 (5)0.3626 (2)−0.08532 (14)0.0272 (7)
H34−0.21240.3630−0.12910.033*
C35−0.3797 (5)0.3319 (2)−0.05493 (15)0.0284 (7)
H35−0.48680.3110−0.07810.034*
C36−0.3872 (4)0.3314 (2)0.00889 (14)0.0246 (7)
H36−0.50030.31110.02910.029*
C370.1035 (4)0.4199 (2)0.04734 (13)0.0203 (6)
H370.21330.44060.02550.024*
C380.2801 (4)0.4497 (2)0.13747 (13)0.0219 (6)
H38A0.26310.51600.15080.026*
H38B0.38900.44760.10840.026*
C390.3245 (4)0.3893 (2)0.19290 (13)0.0208 (6)
H39A0.21330.38790.22110.025*
H39B0.35190.32380.17960.025*
C400.5399 (4)0.3768 (2)0.28123 (13)0.0228 (7)
H40A0.54190.30820.27260.027*
H40B0.44270.38890.31340.027*
C410.7342 (4)0.4083 (2)0.30387 (15)0.0255 (7)
H41A0.72970.47640.31400.031*
H41B0.76690.37340.34200.031*
U11U22U33U12U13U23
O10.0208 (10)0.0298 (12)0.0194 (11)0.0035 (9)0.0004 (9)−0.0023 (9)
O20.0253 (12)0.0260 (12)0.0380 (13)0.0013 (10)−0.0014 (10)−0.0016 (11)
N10.0205 (12)0.0191 (13)0.0233 (13)−0.0006 (11)−0.0006 (10)−0.0003 (11)
N20.0187 (12)0.0240 (13)0.0218 (13)−0.0014 (11)0.0016 (10)0.0007 (11)
C10.0243 (14)0.0148 (14)0.0188 (14)−0.0034 (12)0.0020 (12)0.0043 (11)
C20.0226 (13)0.0136 (14)0.0210 (14)−0.0054 (12)0.0016 (12)0.0030 (12)
C30.0273 (15)0.0174 (15)0.0224 (15)−0.0026 (12)0.0068 (12)−0.0001 (12)
C40.0421 (18)0.0217 (16)0.0180 (15)−0.0037 (15)−0.0049 (14)0.0001 (12)
C50.0304 (16)0.0258 (17)0.0277 (17)0.0000 (14)−0.0102 (14)0.0052 (14)
C60.0210 (14)0.0193 (15)0.0290 (16)0.0014 (12)−0.0009 (13)0.0027 (13)
C70.0182 (13)0.0151 (14)0.0250 (15)−0.0013 (11)0.0050 (12)−0.0007 (12)
C80.0221 (14)0.0221 (16)0.0254 (16)0.0017 (13)−0.0048 (12)−0.0011 (13)
C90.0195 (14)0.0241 (16)0.0272 (16)0.0015 (13)−0.0013 (12)−0.0028 (14)
C100.0264 (15)0.0296 (18)0.0193 (15)−0.0036 (14)0.0017 (12)0.0002 (14)
C110.0311 (17)0.0310 (18)0.0248 (16)0.0002 (14)−0.0048 (13)0.0001 (14)
O310.0219 (10)0.0321 (13)0.0217 (11)−0.0051 (10)0.0009 (9)0.0000 (10)
O320.0225 (11)0.0244 (12)0.0369 (13)0.0006 (10)0.0018 (9)0.0042 (11)
N310.0215 (12)0.0195 (13)0.0211 (13)0.0013 (10)0.0001 (10)−0.0016 (10)
N320.0183 (12)0.0219 (13)0.0187 (13)−0.0010 (10)0.0023 (10)0.0022 (11)
C310.0242 (14)0.0150 (15)0.0221 (15)0.0026 (12)−0.0019 (12)−0.0020 (12)
C320.0226 (13)0.0140 (14)0.0227 (15)0.0013 (12)−0.0012 (12)0.0005 (12)
C330.0274 (15)0.0230 (17)0.0213 (15)0.0040 (13)0.0038 (12)0.0020 (13)
C340.0412 (18)0.0218 (16)0.0186 (15)0.0020 (14)−0.0053 (13)−0.0011 (13)
C350.0336 (18)0.0197 (16)0.0319 (17)0.0010 (14)−0.0132 (14)−0.0015 (14)
C360.0276 (15)0.0163 (15)0.0299 (17)0.0009 (12)0.0011 (13)0.0018 (13)
C370.0199 (14)0.0184 (15)0.0225 (15)0.0030 (12)0.0032 (12)0.0011 (12)
C380.0209 (14)0.0220 (16)0.0227 (15)−0.0006 (12)−0.0002 (11)0.0016 (13)
C390.0170 (12)0.0227 (16)0.0228 (14)−0.0021 (13)−0.0007 (12)−0.0004 (13)
C400.0239 (15)0.0252 (17)0.0192 (15)0.0000 (13)0.0013 (12)0.0007 (13)
C410.0293 (15)0.0241 (17)0.0230 (15)0.0030 (14)−0.0055 (13)−0.0003 (13)
O1—C11.349 (3)O31—C311.349 (3)
O1—H10.8400 (11)O31—H310.8401 (11)
O2—C111.417 (4)O32—C411.418 (4)
O2—H20.8401 (11)O32—H320.8400 (11)
N1—C71.274 (3)N31—C371.275 (4)
N1—C81.466 (3)N31—C381.456 (4)
N2—C91.466 (4)N32—C391.466 (3)
N2—C101.467 (4)N32—C401.467 (4)
N2—H2A0.8600 (11)N32—H32A0.8600 (11)
C1—C61.391 (4)C31—C361.388 (4)
C1—C21.417 (4)C31—C321.413 (4)
C2—C31.401 (4)C32—C331.397 (4)
C2—C71.448 (4)C32—C371.451 (4)
C3—C41.383 (4)C33—C341.374 (4)
C3—H30.9500C33—H330.9500
C4—C51.389 (5)C34—C351.386 (5)
C4—H40.9500C34—H340.9500
C5—C61.382 (4)C35—C361.385 (4)
C5—H50.9500C35—H350.9500
C6—H60.9500C36—H360.9500
C7—H70.9500C37—H370.9500
C8—C91.516 (4)C38—C391.508 (4)
C8—H8A0.9900C38—H38A0.9900
C8—H8B0.9900C38—H38B0.9900
C9—H9A0.9900C39—H39A0.9900
C9—H9B0.9900C39—H39B0.9900
C10—C111.512 (4)C40—C411.514 (4)
C10—H10A0.9900C40—H40A0.9900
C10—H10B0.9900C40—H40B0.9900
C11—H11A0.9900C41—H41A0.9900
C11—H11B0.9900C41—H41B0.9900
C1—O1—H1103 (2)C31—O31—H31104 (2)
C11—O2—H2109 (3)C41—O32—H32112 (3)
C7—N1—C8119.2 (3)C37—N31—C38118.6 (3)
C9—N2—C10114.7 (2)C39—N32—C40112.9 (2)
C9—N2—H2A109 (2)C39—N32—H32A107 (2)
C10—N2—H2A108 (2)C40—N32—H32A107 (2)
O1—C1—C6119.4 (3)O31—C31—C36119.2 (3)
O1—C1—C2121.3 (3)O31—C31—C32121.6 (3)
C6—C1—C2119.4 (3)C36—C31—C32119.2 (3)
C3—C2—C1118.8 (3)C33—C32—C31118.7 (3)
C3—C2—C7120.5 (3)C33—C32—C37120.2 (3)
C1—C2—C7120.7 (2)C31—C32—C37121.1 (2)
C4—C3—C2121.1 (3)C34—C33—C32121.6 (3)
C4—C3—H3119.5C34—C33—H33119.2
C2—C3—H3119.5C32—C33—H33119.2
C3—C4—C5119.5 (3)C33—C34—C35119.3 (3)
C3—C4—H4120.3C33—C34—H34120.4
C5—C4—H4120.3C35—C34—H34120.4
C6—C5—C4120.7 (3)C36—C35—C34120.5 (3)
C6—C5—H5119.7C36—C35—H35119.7
C4—C5—H5119.7C34—C35—H35119.7
C5—C6—C1120.6 (3)C35—C36—C31120.6 (3)
C5—C6—H6119.7C35—C36—H36119.7
C1—C6—H6119.7C31—C36—H36119.7
N1—C7—C2121.0 (3)N31—C37—C32121.8 (3)
N1—C7—H7119.5N31—C37—H37119.1
C2—C7—H7119.5C32—C37—H37119.1
N1—C8—C9109.3 (2)N31—C38—C39111.5 (2)
N1—C8—H8A109.8N31—C38—H38A109.3
C9—C8—H8A109.8C39—C38—H38A109.3
N1—C8—H8B109.8N31—C38—H38B109.3
C9—C8—H8B109.8C39—C38—H38B109.3
H8A—C8—H8B108.3H38A—C38—H38B108.0
N2—C9—C8114.9 (2)N32—C39—C38108.9 (2)
N2—C9—H9A108.5N32—C39—H39A109.9
C8—C9—H9A108.5C38—C39—H39A109.9
N2—C9—H9B108.5N32—C39—H39B109.9
C8—C9—H9B108.5C38—C39—H39B109.9
H9A—C9—H9B107.5H39A—C39—H39B108.3
N2—C10—C11109.8 (3)N32—C40—C41109.5 (2)
N2—C10—H10A109.7N32—C40—H40A109.8
C11—C10—H10A109.7C41—C40—H40A109.8
N2—C10—H10B109.7N32—C40—H40B109.8
C11—C10—H10B109.7C41—C40—H40B109.8
H10A—C10—H10B108.2H40A—C40—H40B108.2
O2—C11—C10113.0 (2)O32—C41—C40111.4 (2)
O2—C11—H11A109.0O32—C41—H41A109.3
C10—C11—H11A109.0C40—C41—H41A109.3
O2—C11—H11B109.0O32—C41—H41B109.3
C10—C11—H11B109.0C40—C41—H41B109.3
H11A—C11—H11B107.8H41A—C41—H41B108.0
O1—C1—C2—C3−179.0 (3)O31—C31—C32—C33179.9 (3)
C6—C1—C2—C30.4 (4)C36—C31—C32—C330.1 (4)
O1—C1—C2—C7−0.6 (4)O31—C31—C32—C371.5 (4)
C6—C1—C2—C7178.8 (2)C36—C31—C32—C37−178.3 (3)
C1—C2—C3—C40.0 (4)C31—C32—C33—C34−1.0 (4)
C7—C2—C3—C4−178.5 (3)C37—C32—C33—C34177.4 (3)
C2—C3—C4—C5−0.4 (5)C32—C33—C34—C350.9 (5)
C3—C4—C5—C60.4 (5)C33—C34—C35—C360.1 (5)
C4—C5—C6—C10.0 (5)C34—C35—C36—C31−1.0 (5)
O1—C1—C6—C5179.0 (3)O31—C31—C36—C35−178.9 (3)
C2—C1—C6—C5−0.4 (4)C32—C31—C36—C350.9 (4)
C8—N1—C7—C2−179.0 (2)C38—N31—C37—C32−178.4 (2)
C3—C2—C7—N1−176.6 (3)C33—C32—C37—N31−178.4 (3)
C1—C2—C7—N15.0 (4)C31—C32—C37—N310.0 (4)
C7—N1—C8—C9133.4 (3)C37—N31—C38—C39−141.5 (3)
C10—N2—C9—C8−62.7 (3)C40—N32—C39—C38177.5 (2)
N1—C8—C9—N2−171.8 (2)N31—C38—C39—N32−176.1 (2)
C9—N2—C10—C11178.0 (2)C39—N32—C40—C41168.2 (2)
N2—C10—C11—O2−57.8 (4)N32—C40—C41—O32−59.2 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.84 (2)1.77 (2)2.562 (3)157 (3)
O2—H2···N32i0.84 (1)2.00 (1)2.839 (3)178 (4)
N2—H2A···O1i0.86 (2)2.27 (2)3.106 (3)165 (2)
O31—H31···N310.84 (2)1.82 (2)2.596 (3)154 (3)
O32—H32···N2ii0.84 (1)2.00 (1)2.795 (3)158 (4)
N32—H32A···O31i0.86 (2)2.55 (3)3.347 (3)154 (2)
C39—H39A···O32iii0.992.493.443 (4)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.84 (2)1.77 (2)2.562 (3)157 (3)
O2—H2⋯N32i0.84 (1)2.00 (1)2.839 (3)178 (4)
N2—H2A⋯O1i0.86 (2)2.27 (2)3.106 (3)165 (2)
O31—H31⋯N310.84 (2)1.82 (2)2.596 (3)154 (3)
O32—H32⋯N2ii0.84 (1)2.00 (1)2.795 (3)158 (4)
N32—H32A⋯O31i0.86 (2)2.55 (3)3.347 (3)154 (2)
C39—H39A⋯O32iii0.992.493.443 (4)161

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Norifumi Fujita; Seiji Shinkai; Tony D James
Journal:  Chem Asian J       Date:  2008-07-07

5.  Mixed-ligand copper(II)-phenolate complexes: effect of coligand on enhanced DNA and protein binding, DNA cleavage, and anticancer activity.

Authors:  Venugopal Rajendiran; Ramasamy Karthik; Mallayan Palaniandavar; Helen Stoeckli-Evans; Vaiyapuri Subbarayan Periasamy; Mohammad Abdulkader Akbarsha; Bangalore Suresh Srinag; Hanumanthappa Krishnamurthy
Journal:  Inorg Chem       Date:  2007-09-05       Impact factor: 5.165

6.  Hydrogen-bonded cyclic dimer formation in temperature-induced reversal of tautomerism of salicylideneanilines.

Authors:  Toshikatsu Fujiwara; Jun Harada; Keiichiro Ogawa
Journal:  J Phys Chem A       Date:  2009-03-05       Impact factor: 2.781

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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