Literature DB >> 22219889

Ethyl 2-methyl-4-phenyl-pyrido[1,2-a]benzimidazole-3-carboxyl-ate.

Yan Qing Ge1, Hai Yan Ge, Xiao Qun Cao.   

Abstract

The title compound, C(21)H(18)N(2)O(2), was synthesized using a novel tandem annulation reaction between (1H-benzimidazol-2-yl)(phen-yl)methanone and (E)-ethyl 4-bromo-but-2-enoate under mild conditions. The dihedral angles between the mean planes of the five-membered imidazole ring and the pyridine, benzene and phenyl rings are 0.45 (6), 1.69 (1) and 70.96 (8)°, respectively. In the crystal, mol-ecules are linked through inter-molecular C-H⋯N hydrogen bonds.

Entities:  

Year:  2011        PMID: 22219889      PMCID: PMC3247584          DOI: 10.1107/S1600536811039973

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of nitro­gen-containing heterocyclic compounds in the agrochemical and pharmaceutical fields, see: Ge et al. (2009 ▶). For the synthesis of the title compound, see: Ge et al. (2011 ▶). For the structure of 2,7,8-trimethyl-3-eth­oxy­carbonyl-4- phenyl­pyrido[1,2-a]benzimidazole, see: Ge et al.(2011 ▶). Some pyrido[1,2-a]benzimidazole derivatives are of inter­est for their biological activity, such as anti­neoplastic activity and central GABA-A receptor modulators for the treatment of anxiety, see: Badawey & Kappe (1999 ▶).

Experimental

Crystal data

C21H18N2O2 M = 330.37 Monoclinic, a = 10.1176 (13) Å b = 14.9136 (18) Å c = 12.2648 (15) Å β = 108.487 (2)° V = 1755.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.26 × 0.22 × 0.19 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.979, T max = 0.985 8867 measured reflections 3093 independent reflections 2515 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.096 S = 1.06 3093 reflections 227 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039973/fj2449sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039973/fj2449Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039973/fj2449Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H18N2O2F(000) = 696
Mr = 330.37Dx = 1.250 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4793 reflections
a = 10.1176 (13) Åθ = 2.2–28.2°
b = 14.9136 (18) ŵ = 0.08 mm1
c = 12.2648 (15) ÅT = 298 K
β = 108.487 (2)°BLOCK, yellow
V = 1755.1 (4) Å30.26 × 0.22 × 0.19 mm
Z = 4
Bruker SMART APEX CCD diffractometer3093 independent reflections
Radiation source: fine-focus sealed tube2515 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.979, Tmax = 0.985k = −10→17
8867 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.096w = 1/[σ2(Fo2) + (0.0406P)2 + 0.4084P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3093 reflectionsΔρmax = 0.18 e Å3
227 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0077 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.10877 (12)0.07612 (10)0.79576 (12)0.0806 (4)
O20.26487 (10)−0.01607 (7)0.91064 (10)0.0565 (3)
N10.57376 (11)0.22116 (7)0.87282 (9)0.0359 (3)
N20.60190 (12)0.26824 (8)1.05384 (9)0.0436 (3)
C10.68800 (13)0.27812 (9)0.90225 (11)0.0375 (3)
C20.70311 (14)0.30576 (9)1.01441 (11)0.0398 (3)
C30.81352 (16)0.36238 (11)1.07098 (13)0.0508 (4)
H30.82620.38171.14570.061*
C40.90241 (16)0.38855 (11)1.01303 (14)0.0545 (4)
H40.97670.42601.04960.065*
C50.88497 (16)0.36077 (11)0.90058 (14)0.0540 (4)
H50.94730.38040.86400.065*
C60.77758 (15)0.30500 (10)0.84297 (13)0.0468 (4)
H60.76540.28620.76810.056*
C70.52624 (13)0.21772 (9)0.96751 (11)0.0365 (3)
C80.40891 (14)0.16270 (9)0.95981 (11)0.0385 (3)
C90.35444 (14)0.15819 (10)1.05942 (12)0.0406 (3)
C100.42867 (17)0.11386 (11)1.15914 (13)0.0511 (4)
H100.51360.08721.16470.061*
C110.3766 (2)0.10917 (13)1.25066 (14)0.0637 (5)
H110.42610.07841.31700.076*
C120.2527 (2)0.14964 (13)1.24415 (16)0.0677 (5)
H120.21860.14661.30610.081*
C130.17917 (19)0.19447 (12)1.14640 (17)0.0634 (5)
H130.09560.22251.14220.076*
C140.22908 (16)0.19811 (11)1.05370 (14)0.0517 (4)
H140.17780.22770.98690.062*
C150.34899 (14)0.11679 (9)0.85925 (11)0.0389 (3)
C160.39968 (14)0.12299 (9)0.76289 (11)0.0400 (3)
C170.51144 (14)0.17530 (9)0.77255 (11)0.0398 (3)
H170.54640.18030.71120.048*
C180.33086 (17)0.07371 (12)0.65248 (12)0.0548 (4)
H18A0.38390.08230.60080.082*
H18B0.23820.09650.61790.082*
H18C0.32650.01090.66820.082*
C190.22564 (15)0.05809 (10)0.85009 (12)0.0443 (3)
C200.15708 (18)−0.07492 (11)0.92566 (16)0.0598 (4)
H20A0.1769−0.13660.91090.072*
H20B0.0673−0.05870.87170.072*
C210.15356 (18)−0.06592 (12)1.04557 (16)0.0656 (5)
H21A0.2437−0.08001.09850.098*
H21B0.0855−0.10641.05720.098*
H21C0.1292−0.00551.05830.098*
U11U22U33U12U13U23
O10.0426 (7)0.0950 (10)0.0882 (9)−0.0126 (6)−0.0019 (6)0.0330 (8)
O20.0439 (6)0.0466 (6)0.0797 (8)−0.0035 (5)0.0206 (5)0.0096 (6)
N10.0368 (6)0.0431 (6)0.0287 (5)−0.0039 (5)0.0119 (5)0.0010 (5)
N20.0455 (7)0.0532 (7)0.0345 (6)−0.0091 (6)0.0160 (5)−0.0049 (5)
C10.0355 (7)0.0412 (7)0.0352 (7)−0.0016 (6)0.0105 (6)0.0041 (6)
C20.0404 (7)0.0438 (8)0.0347 (7)−0.0027 (6)0.0111 (6)0.0021 (6)
C30.0526 (9)0.0554 (9)0.0407 (8)−0.0105 (7)0.0093 (7)−0.0024 (7)
C40.0449 (8)0.0561 (10)0.0555 (10)−0.0134 (7)0.0062 (7)0.0057 (7)
C50.0443 (8)0.0637 (10)0.0559 (10)−0.0092 (7)0.0187 (7)0.0121 (8)
C60.0468 (8)0.0558 (9)0.0408 (8)−0.0046 (7)0.0182 (7)0.0061 (7)
C70.0375 (7)0.0438 (8)0.0295 (6)−0.0014 (6)0.0125 (5)0.0014 (6)
C80.0372 (7)0.0455 (8)0.0336 (7)−0.0006 (6)0.0126 (6)0.0031 (6)
C90.0414 (8)0.0452 (8)0.0386 (7)−0.0096 (6)0.0176 (6)−0.0036 (6)
C100.0502 (9)0.0640 (10)0.0421 (8)−0.0040 (8)0.0187 (7)0.0028 (7)
C110.0735 (12)0.0798 (12)0.0428 (9)−0.0143 (10)0.0257 (8)0.0046 (8)
C120.0809 (13)0.0801 (13)0.0603 (11)−0.0246 (11)0.0483 (10)−0.0144 (10)
C130.0583 (10)0.0676 (11)0.0788 (13)−0.0100 (9)0.0425 (10)−0.0138 (10)
C140.0472 (8)0.0547 (9)0.0572 (9)−0.0036 (7)0.0224 (7)−0.0012 (7)
C150.0365 (7)0.0430 (8)0.0362 (7)−0.0008 (6)0.0100 (6)0.0037 (6)
C160.0421 (8)0.0440 (8)0.0320 (7)−0.0008 (6)0.0090 (6)0.0008 (6)
C170.0445 (8)0.0480 (8)0.0278 (7)−0.0012 (6)0.0129 (6)0.0000 (6)
C180.0591 (10)0.0625 (10)0.0397 (8)−0.0102 (8)0.0113 (7)−0.0080 (7)
C190.0394 (8)0.0531 (9)0.0398 (7)−0.0045 (7)0.0115 (6)−0.0019 (7)
C200.0554 (10)0.0456 (9)0.0834 (12)−0.0115 (7)0.0291 (9)0.0012 (8)
C210.0583 (10)0.0596 (11)0.0838 (13)0.0024 (8)0.0294 (10)0.0088 (9)
O1—C191.1894 (18)C10—C111.385 (2)
O2—C191.3211 (18)C10—H100.9300
O2—C201.4564 (18)C11—C121.371 (3)
N1—C171.3733 (16)C11—H110.9300
N1—C11.3868 (17)C12—C131.368 (3)
N1—C71.3917 (16)C12—H120.9300
N2—C71.3270 (17)C13—C141.384 (2)
N2—C21.3818 (17)C13—H130.9300
C1—C61.3887 (19)C14—H140.9300
C1—C21.3973 (19)C15—C161.4328 (19)
C2—C31.397 (2)C15—C191.4992 (19)
C3—C41.368 (2)C16—C171.3477 (19)
C3—H30.9300C16—C181.5036 (19)
C4—C51.397 (2)C17—H170.9300
C4—H40.9300C18—H18A0.9600
C5—C61.373 (2)C18—H18B0.9600
C5—H50.9300C18—H18C0.9600
C6—H60.9300C20—C211.488 (3)
C7—C81.4214 (19)C20—H20A0.9700
C8—C151.3722 (19)C20—H20B0.9700
C8—C91.4926 (19)C21—H21A0.9600
C9—C141.383 (2)C21—H21B0.9600
C9—C101.384 (2)C21—H21C0.9600
C19—O2—C20118.17 (12)C13—C12—H12120.0
C17—N1—C1130.26 (11)C11—C12—H12120.0
C17—N1—C7123.15 (11)C12—C13—C14120.04 (16)
C1—N1—C7106.58 (10)C12—C13—H13120.0
C7—N2—C2104.76 (11)C14—C13—H13120.0
N1—C1—C6131.99 (13)C9—C14—C13120.62 (16)
N1—C1—C2105.00 (11)C9—C14—H14119.7
C6—C1—C2122.99 (13)C13—C14—H14119.7
N2—C2—C3129.47 (13)C8—C15—C16122.51 (12)
N2—C2—C1111.30 (12)C8—C15—C19118.60 (12)
C3—C2—C1119.21 (13)C16—C15—C19118.88 (12)
C4—C3—C2117.93 (14)C17—C16—C15118.34 (12)
C4—C3—H3121.0C17—C16—C18119.87 (13)
C2—C3—H3121.0C15—C16—C18121.79 (13)
C3—C4—C5122.03 (15)C16—C17—N1120.08 (12)
C3—C4—H4119.0C16—C17—H17120.0
C5—C4—H4119.0N1—C17—H17120.0
C6—C5—C4121.30 (14)C16—C18—H18A109.5
C6—C5—H5119.4C16—C18—H18B109.5
C4—C5—H5119.4H18A—C18—H18B109.5
C5—C6—C1116.54 (14)C16—C18—H18C109.5
C5—C6—H6121.7H18A—C18—H18C109.5
C1—C6—H6121.7H18B—C18—H18C109.5
N2—C7—N1112.36 (11)O1—C19—O2124.91 (14)
N2—C7—C8129.73 (12)O1—C19—C15124.47 (14)
N1—C7—C8117.91 (11)O2—C19—C15110.62 (12)
C15—C8—C7117.99 (12)O2—C20—C21108.91 (14)
C15—C8—C9122.73 (12)O2—C20—H20A109.9
C7—C8—C9119.27 (12)C21—C20—H20A109.9
C14—C9—C10118.86 (14)O2—C20—H20B109.9
C14—C9—C8120.66 (13)C21—C20—H20B109.9
C10—C9—C8120.48 (13)H20A—C20—H20B108.3
C9—C10—C11120.09 (16)C20—C21—H21A109.5
C9—C10—H10120.0C20—C21—H21B109.5
C11—C10—H10120.0H21A—C21—H21B109.5
C12—C11—C10120.43 (17)C20—C21—H21C109.5
C12—C11—H11119.8H21A—C21—H21C109.5
C10—C11—H11119.8H21B—C21—H21C109.5
C13—C12—C11119.93 (15)
C17—N1—C1—C6−2.2 (2)C15—C8—C9—C10109.59 (17)
C7—N1—C1—C6178.59 (15)C7—C8—C9—C10−71.49 (18)
C17—N1—C1—C2179.46 (13)C14—C9—C10—C110.7 (2)
C7—N1—C1—C20.20 (14)C8—C9—C10—C11−179.29 (14)
C7—N2—C2—C3−177.76 (15)C9—C10—C11—C12−1.2 (3)
C7—N2—C2—C10.44 (16)C10—C11—C12—C130.5 (3)
N1—C1—C2—N2−0.40 (15)C11—C12—C13—C140.7 (3)
C6—C1—C2—N2−178.98 (13)C10—C9—C14—C130.5 (2)
N1—C1—C2—C3178.00 (13)C8—C9—C14—C13−179.52 (14)
C6—C1—C2—C3−0.6 (2)C12—C13—C14—C9−1.2 (3)
N2—C2—C3—C4178.25 (15)C7—C8—C15—C16−0.4 (2)
C1—C2—C3—C40.2 (2)C9—C8—C15—C16178.50 (13)
C2—C3—C4—C50.3 (2)C7—C8—C15—C19179.67 (12)
C3—C4—C5—C6−0.5 (3)C9—C8—C15—C19−1.4 (2)
C4—C5—C6—C10.1 (2)C8—C15—C16—C170.7 (2)
N1—C1—C6—C5−177.72 (14)C19—C15—C16—C17−179.38 (13)
C2—C1—C6—C50.4 (2)C8—C15—C16—C18−178.70 (14)
C2—N2—C7—N1−0.31 (15)C19—C15—C16—C181.2 (2)
C2—N2—C7—C8179.29 (14)C15—C16—C17—N1−0.1 (2)
C17—N1—C7—N2−179.25 (12)C18—C16—C17—N1179.34 (13)
C1—N1—C7—N20.07 (15)C1—N1—C17—C16−179.97 (13)
C17—N1—C7—C81.10 (19)C7—N1—C17—C16−0.8 (2)
C1—N1—C7—C8−179.58 (12)C20—O2—C19—O1−8.9 (2)
N2—C7—C8—C15179.97 (14)C20—O2—C19—C15171.09 (13)
N1—C7—C8—C15−0.45 (19)C8—C15—C19—O1105.81 (18)
N2—C7—C8—C91.0 (2)C16—C15—C19—O1−74.1 (2)
N1—C7—C8—C9−179.42 (12)C8—C15—C19—O2−74.15 (16)
C15—C8—C9—C14−70.36 (19)C16—C15—C19—O2105.95 (15)
C7—C8—C9—C14108.56 (16)C19—O2—C20—C21−106.00 (16)
D—H···AD—HH···AD···AD—H···A
C17—H17···N2i0.932.313.2092 (18)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17⋯N2i0.932.313.2092 (18)164

Symmetry code: (i) .

  2 in total

1.  Benzimidazole condensed ring systems. XI. Synthesis of some substituted cycloalkyl pyrido[1,2-a]benzimidazoles with anticipated antineoplastic activity.

Authors:  E A Badawey; T Kappe
Journal:  Eur J Med Chem       Date:  1999 Jul-Aug       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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