| Literature DB >> 22219856 |
Kwang Ha1.
Abstract
The Pd(II) ion in the title complex, [PdCl(2)(C(14)H(10)N(4))], is four-coordinated in a distorted square-planar environment defined by two N atoms of a chelating 2,3-di-2-pyridyl-pyrazine (dpp) ligand and two chloride anions. The pyridine ring coordinated to the Pd atom is inclined slightly to its carrier pyrazine ring [dihedral angle = 14.4 (3)°], whereas the uncoordinated pyridine ring is inclined considerably to the pyrazine ring [dihedral angle = 52.2 (2)°]. The dihedral angle between the two pyridine rings is 58.8 (2)°. In the crystal, complex mol-ecules are connected by inter-molecular C-H⋯Cl and C-H⋯N hydrogen bonds, forming a three-dimensional network. Intra-molecular C-H⋯Cl hydrogen bonds are also present.Entities:
Year: 2011 PMID: 22219856 PMCID: PMC3247551 DOI: 10.1107/S1600536811044369
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C14H10N4)] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 2636 reflections | |
| θ = 2.8–28.2° | |
| µ = 1.68 mm−1 | |
| α = 84.543 (2)° | |
| β = 71.400 (2)° | Block, orange |
| γ = 71.475 (2)° | 0.26 × 0.16 × 0.12 mm |
| Bruker SMART 1000 CCD diffractometer | 3406 independent reflections |
| Radiation source: fine-focus sealed tube | 2608 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.3°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 5225 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3406 reflections | (Δ/σ)max < 0.001 |
| 190 parameters | Δρmax = 1.18 e Å−3 |
| 0 restraints | Δρmin = −2.09 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.71773 (7) | 0.48277 (5) | −0.10860 (5) | 0.02952 (14) | |
| Cl1 | 0.6858 (3) | 0.43540 (19) | −0.31486 (17) | 0.0416 (4) | |
| Cl2 | 0.6748 (2) | 0.72437 (18) | −0.17098 (19) | 0.0416 (4) | |
| N1 | 0.7538 (6) | 0.2716 (5) | −0.0374 (5) | 0.0241 (10) | |
| N2 | 0.7697 (8) | 0.0024 (6) | 0.0868 (6) | 0.0384 (13) | |
| N3 | 0.7611 (6) | 0.5057 (5) | 0.0743 (5) | 0.0249 (10) | |
| N4 | 0.8648 (8) | −0.0406 (6) | 0.3339 (6) | 0.0398 (14) | |
| C1 | 0.7696 (8) | 0.2515 (7) | 0.0931 (6) | 0.0305 (14) | |
| C2 | 0.7656 (9) | 0.1158 (7) | 0.1572 (7) | 0.0313 (14) | |
| C3 | 0.7645 (11) | 0.0272 (8) | −0.0442 (7) | 0.0450 (18) | |
| H3 | 0.7708 | −0.0524 | −0.0972 | 0.054* | |
| C4 | 0.7504 (9) | 0.1629 (7) | −0.1050 (7) | 0.0349 (15) | |
| H4 | 0.7381 | 0.1782 | −0.1960 | 0.042* | |
| C5 | 0.7923 (7) | 0.3781 (6) | 0.1508 (6) | 0.0228 (12) | |
| C6 | 0.8494 (9) | 0.3771 (7) | 0.2643 (7) | 0.0362 (15) | |
| H6 | 0.8776 | 0.2883 | 0.3149 | 0.043* | |
| C7 | 0.8667 (9) | 0.5053 (8) | 0.3064 (7) | 0.0368 (15) | |
| H7 | 0.9028 | 0.5056 | 0.3868 | 0.044* | |
| C8 | 0.8305 (9) | 0.6301 (8) | 0.2296 (7) | 0.0381 (16) | |
| H8 | 0.8414 | 0.7189 | 0.2558 | 0.046* | |
| C9 | 0.7787 (8) | 0.6264 (6) | 0.1150 (7) | 0.0288 (13) | |
| H9 | 0.7541 | 0.7140 | 0.0621 | 0.035* | |
| C10 | 0.7479 (8) | 0.0837 (7) | 0.3079 (6) | 0.0290 (13) | |
| C11 | 0.6105 (9) | 0.1744 (7) | 0.4115 (7) | 0.0362 (15) | |
| H11 | 0.5300 | 0.2628 | 0.3891 | 0.043* | |
| C12 | 0.5941 (10) | 0.1325 (8) | 0.5488 (7) | 0.0434 (17) | |
| H12 | 0.5014 | 0.1921 | 0.6228 | 0.052* | |
| C13 | 0.7126 (11) | 0.0043 (8) | 0.5770 (7) | 0.0461 (19) | |
| H13 | 0.7026 | −0.0273 | 0.6704 | 0.055* | |
| C14 | 0.8465 (11) | −0.0774 (8) | 0.4673 (8) | 0.049 (2) | |
| H14 | 0.9305 | −0.1649 | 0.4874 | 0.059* |
| Pd1 | 0.0345 (3) | 0.0262 (3) | 0.0292 (3) | −0.0109 (2) | −0.0108 (2) | 0.00380 (18) |
| Cl1 | 0.0574 (11) | 0.0411 (9) | 0.0321 (9) | −0.0175 (8) | −0.0211 (8) | 0.0073 (7) |
| Cl2 | 0.0506 (10) | 0.0293 (8) | 0.0514 (11) | −0.0165 (7) | −0.0235 (9) | 0.0126 (7) |
| N1 | 0.024 (2) | 0.022 (2) | 0.024 (3) | −0.008 (2) | −0.006 (2) | 0.0076 (19) |
| N2 | 0.057 (4) | 0.025 (3) | 0.036 (3) | −0.013 (3) | −0.019 (3) | 0.005 (2) |
| N3 | 0.027 (3) | 0.022 (2) | 0.030 (3) | −0.010 (2) | −0.014 (2) | 0.009 (2) |
| N4 | 0.055 (4) | 0.030 (3) | 0.036 (3) | −0.006 (3) | −0.022 (3) | 0.001 (2) |
| C1 | 0.032 (3) | 0.036 (4) | 0.022 (3) | −0.008 (3) | −0.009 (3) | 0.000 (3) |
| C2 | 0.037 (3) | 0.024 (3) | 0.030 (3) | −0.007 (3) | −0.008 (3) | −0.004 (2) |
| C3 | 0.076 (5) | 0.032 (4) | 0.036 (4) | −0.020 (4) | −0.024 (4) | −0.006 (3) |
| C4 | 0.059 (4) | 0.024 (3) | 0.028 (3) | −0.016 (3) | −0.016 (3) | −0.006 (2) |
| C5 | 0.023 (3) | 0.023 (3) | 0.022 (3) | −0.005 (2) | −0.007 (2) | −0.004 (2) |
| C6 | 0.040 (4) | 0.032 (3) | 0.039 (4) | −0.010 (3) | −0.017 (3) | 0.001 (3) |
| C7 | 0.034 (3) | 0.053 (4) | 0.028 (3) | −0.019 (3) | −0.011 (3) | 0.000 (3) |
| C8 | 0.042 (4) | 0.040 (4) | 0.032 (4) | −0.018 (3) | −0.004 (3) | −0.007 (3) |
| C9 | 0.030 (3) | 0.020 (3) | 0.037 (4) | −0.009 (2) | −0.008 (3) | −0.002 (2) |
| C10 | 0.037 (3) | 0.026 (3) | 0.029 (3) | −0.013 (3) | −0.013 (3) | 0.001 (2) |
| C11 | 0.046 (4) | 0.032 (4) | 0.033 (4) | −0.014 (3) | −0.013 (3) | −0.002 (3) |
| C12 | 0.058 (5) | 0.050 (4) | 0.027 (4) | −0.027 (4) | −0.008 (3) | 0.000 (3) |
| C13 | 0.081 (6) | 0.044 (4) | 0.029 (4) | −0.035 (4) | −0.024 (4) | 0.009 (3) |
| C14 | 0.075 (6) | 0.040 (4) | 0.055 (5) | −0.025 (4) | −0.046 (5) | 0.015 (4) |
| Pd1—N3 | 2.035 (5) | C4—H4 | 0.9500 |
| Pd1—N1 | 2.038 (5) | C5—C6 | 1.368 (8) |
| Pd1—Cl2 | 2.2787 (17) | C6—C7 | 1.395 (9) |
| Pd1—Cl1 | 2.2860 (17) | C6—H6 | 0.9500 |
| N1—C4 | 1.308 (7) | C7—C8 | 1.363 (9) |
| N1—C1 | 1.357 (7) | C7—H7 | 0.9500 |
| N2—C3 | 1.336 (8) | C8—C9 | 1.362 (9) |
| N2—C2 | 1.338 (8) | C8—H8 | 0.9500 |
| N3—C9 | 1.323 (7) | C9—H9 | 0.9500 |
| N3—C5 | 1.377 (7) | C10—C11 | 1.383 (9) |
| N4—C10 | 1.331 (8) | C11—C12 | 1.385 (9) |
| N4—C14 | 1.334 (9) | C11—H11 | 0.9500 |
| C1—C2 | 1.398 (8) | C12—C13 | 1.368 (10) |
| C1—C5 | 1.477 (8) | C12—H12 | 0.9500 |
| C2—C10 | 1.495 (8) | C13—C14 | 1.373 (11) |
| C3—C4 | 1.367 (9) | C13—H13 | 0.9500 |
| C3—H3 | 0.9500 | C14—H14 | 0.9500 |
| N3—Pd1—N1 | 80.24 (19) | N3—C5—C1 | 114.2 (5) |
| N3—Pd1—Cl2 | 95.40 (14) | C5—C6—C7 | 120.6 (6) |
| N1—Pd1—Cl2 | 175.50 (15) | C5—C6—H6 | 119.7 |
| N3—Pd1—Cl1 | 174.80 (14) | C7—C6—H6 | 119.7 |
| N1—Pd1—Cl1 | 95.27 (14) | C8—C7—C6 | 118.5 (6) |
| Cl2—Pd1—Cl1 | 89.14 (6) | C8—C7—H7 | 120.8 |
| C4—N1—C1 | 120.7 (5) | C6—C7—H7 | 120.8 |
| C4—N1—Pd1 | 124.3 (4) | C9—C8—C7 | 119.4 (6) |
| C1—N1—Pd1 | 114.8 (4) | C9—C8—H8 | 120.3 |
| C3—N2—C2 | 117.3 (6) | C7—C8—H8 | 120.3 |
| C9—N3—C5 | 119.8 (5) | N3—C9—C8 | 122.6 (6) |
| C9—N3—Pd1 | 125.0 (4) | N3—C9—H9 | 118.7 |
| C5—N3—Pd1 | 114.8 (4) | C8—C9—H9 | 118.7 |
| C10—N4—C14 | 117.3 (6) | N4—C10—C11 | 123.3 (6) |
| N1—C1—C2 | 117.9 (6) | N4—C10—C2 | 115.6 (5) |
| N1—C1—C5 | 114.9 (5) | C11—C10—C2 | 121.0 (6) |
| C2—C1—C5 | 127.2 (5) | C10—C11—C12 | 117.9 (7) |
| N2—C2—C1 | 121.4 (6) | C10—C11—H11 | 121.0 |
| N2—C2—C10 | 113.5 (5) | C12—C11—H11 | 121.0 |
| C1—C2—C10 | 125.1 (5) | C13—C12—C11 | 119.4 (7) |
| N2—C3—C4 | 122.5 (6) | C13—C12—H12 | 120.3 |
| N2—C3—H3 | 118.8 | C11—C12—H12 | 120.3 |
| C4—C3—H3 | 118.8 | C12—C13—C14 | 118.5 (7) |
| N1—C4—C3 | 119.8 (6) | C12—C13—H13 | 120.7 |
| N1—C4—H4 | 120.1 | C14—C13—H13 | 120.7 |
| C3—C4—H4 | 120.1 | N4—C14—C13 | 123.5 (7) |
| C6—C5—N3 | 118.9 (5) | N4—C14—H14 | 118.2 |
| C6—C5—C1 | 126.8 (6) | C13—C14—H14 | 118.2 |
| N3—Pd1—N1—C4 | −178.6 (5) | Pd1—N3—C5—C1 | −6.1 (6) |
| Cl1—Pd1—N1—C4 | −1.2 (5) | N1—C1—C5—C6 | −164.9 (6) |
| N3—Pd1—N1—C1 | 6.0 (4) | C2—C1—C5—C6 | 14.1 (10) |
| Cl1—Pd1—N1—C1 | −176.7 (4) | N1—C1—C5—N3 | 11.2 (7) |
| N1—Pd1—N3—C9 | 173.4 (5) | C2—C1—C5—N3 | −169.8 (6) |
| Cl2—Pd1—N3—C9 | −7.8 (5) | N3—C5—C6—C7 | 3.4 (9) |
| N1—Pd1—N3—C5 | 0.3 (4) | C1—C5—C6—C7 | 179.2 (6) |
| Cl2—Pd1—N3—C5 | 179.2 (4) | C5—C6—C7—C8 | −1.9 (10) |
| C4—N1—C1—C2 | −5.6 (9) | C6—C7—C8—C9 | 0.1 (10) |
| Pd1—N1—C1—C2 | 170.0 (4) | C5—N3—C9—C8 | 1.3 (9) |
| C4—N1—C1—C5 | 173.5 (5) | Pd1—N3—C9—C8 | −171.3 (5) |
| Pd1—N1—C1—C5 | −10.9 (6) | C7—C8—C9—N3 | 0.1 (10) |
| C3—N2—C2—C1 | −4.7 (10) | C14—N4—C10—C11 | −0.1 (10) |
| C3—N2—C2—C10 | 172.6 (6) | C14—N4—C10—C2 | −176.2 (6) |
| N1—C1—C2—N2 | 8.5 (9) | N2—C2—C10—N4 | 50.6 (8) |
| C5—C1—C2—N2 | −170.5 (6) | C1—C2—C10—N4 | −132.3 (7) |
| N1—C1—C2—C10 | −168.5 (6) | N2—C2—C10—C11 | −125.6 (7) |
| C5—C1—C2—C10 | 12.5 (10) | C1—C2—C10—C11 | 51.5 (9) |
| C2—N2—C3—C4 | −1.8 (11) | N4—C10—C11—C12 | −0.5 (10) |
| C1—N1—C4—C3 | −0.6 (10) | C2—C10—C11—C12 | 175.4 (6) |
| Pd1—N1—C4—C3 | −175.8 (5) | C10—C11—C12—C13 | 0.0 (10) |
| N2—C3—C4—N1 | 4.6 (12) | C11—C12—C13—C14 | 1.0 (11) |
| C9—N3—C5—C6 | −3.1 (8) | C10—N4—C14—C13 | 1.2 (11) |
| Pd1—N3—C5—C6 | 170.3 (4) | C12—C13—C14—N4 | −1.7 (11) |
| C9—N3—C5—C1 | −179.5 (5) |
| H··· | ||||
| C3—H3···Cl2i | 0.95 | 2.73 | 3.632 (7) | 159 |
| C4—H4···Cl1 | 0.95 | 2.60 | 3.216 (7) | 123 |
| C8—H8···N4ii | 0.95 | 2.58 | 3.529 (9) | 178 |
| C9—H9···Cl2 | 0.95 | 2.62 | 3.241 (7) | 123 |
| C13—H13···Cl2iii | 0.95 | 2.76 | 3.530 (7) | 139 |
| Pd1—N3 | 2.035 (5) |
| Pd1—N1 | 2.038 (5) |
| Pd1—Cl2 | 2.2787 (17) |
| Pd1—Cl1 | 2.2860 (17) |
| N3—Pd1—N1 | 80.24 (19) |
| Cl2—Pd1—Cl1 | 89.14 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3⋯Cl2i | 0.95 | 2.73 | 3.632 (7) | 159 |
| C4—H4⋯Cl1 | 0.95 | 2.60 | 3.216 (7) | 123 |
| C8—H8⋯N4ii | 0.95 | 2.58 | 3.529 (9) | 178 |
| C9—H9⋯Cl2 | 0.95 | 2.62 | 3.241 (7) | 123 |
| C13—H13⋯Cl2iii | 0.95 | 2.76 | 3.530 (7) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) .