Literature DB >> 22219856

Dichlorido(2,3-di-2-pyridyl-pyrazine-κN,N)palladium(II).

Kwang Ha1.   

Abstract

The Pd(II) ion in the title complex, [PdCl(2)(C(14)H(10)N(4))], is four-coordinated in a distorted square-planar environment defined by two N atoms of a chelating 2,3-di-2-pyridyl-pyrazine (dpp) ligand and two chloride anions. The pyridine ring coordinated to the Pd atom is inclined slightly to its carrier pyrazine ring [dihedral angle = 14.4 (3)°], whereas the uncoordinated pyridine ring is inclined considerably to the pyrazine ring [dihedral angle = 52.2 (2)°]. The dihedral angle between the two pyridine rings is 58.8 (2)°. In the crystal, complex mol-ecules are connected by inter-molecular C-H⋯Cl and C-H⋯N hydrogen bonds, forming a three-dimensional network. Intra-molecular C-H⋯Cl hydrogen bonds are also present.

Entities:  

Year:  2011        PMID: 22219856      PMCID: PMC3247551          DOI: 10.1107/S1600536811044369

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures of [PtX 2(dpp)] (X = Br, Cl), see: Ha (2011a ▶,b ▶).

Experimental

Crystal data

[PdCl2(C14H10N4)] M = 411.56 Triclinic, a = 8.1681 (10) Å b = 9.5480 (11) Å c = 10.1137 (12) Å α = 84.543 (2)° β = 71.400 (2)° γ = 71.475 (2)° V = 708.81 (15) Å3 Z = 2 Mo Kα radiation μ = 1.68 mm−1 T = 200 K 0.26 × 0.16 × 0.12 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.748, T max = 1.000 5225 measured reflections 3406 independent reflections 2608 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.115 S = 1.24 3406 reflections 190 parameters H-atom parameters constrained Δρmax = 1.18 e Å−3 Δρmin = −2.09 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044369/tk5006sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044369/tk5006Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdCl2(C14H10N4)]Z = 2
Mr = 411.56F(000) = 404
Triclinic, P1Dx = 1.928 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1681 (10) ÅCell parameters from 2636 reflections
b = 9.5480 (11) Åθ = 2.8–28.2°
c = 10.1137 (12) ŵ = 1.68 mm1
α = 84.543 (2)°T = 200 K
β = 71.400 (2)°Block, orange
γ = 71.475 (2)°0.26 × 0.16 × 0.12 mm
V = 708.81 (15) Å3
Bruker SMART 1000 CCD diffractometer3406 independent reflections
Radiation source: fine-focus sealed tube2608 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 28.3°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.748, Tmax = 1.000k = −12→11
5225 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.24w = 1/[σ2(Fo2) + (0.P)2 + 3.5422P] where P = (Fo2 + 2Fc2)/3
3406 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 1.18 e Å3
0 restraintsΔρmin = −2.09 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.71773 (7)0.48277 (5)−0.10860 (5)0.02952 (14)
Cl10.6858 (3)0.43540 (19)−0.31486 (17)0.0416 (4)
Cl20.6748 (2)0.72437 (18)−0.17098 (19)0.0416 (4)
N10.7538 (6)0.2716 (5)−0.0374 (5)0.0241 (10)
N20.7697 (8)0.0024 (6)0.0868 (6)0.0384 (13)
N30.7611 (6)0.5057 (5)0.0743 (5)0.0249 (10)
N40.8648 (8)−0.0406 (6)0.3339 (6)0.0398 (14)
C10.7696 (8)0.2515 (7)0.0931 (6)0.0305 (14)
C20.7656 (9)0.1158 (7)0.1572 (7)0.0313 (14)
C30.7645 (11)0.0272 (8)−0.0442 (7)0.0450 (18)
H30.7708−0.0524−0.09720.054*
C40.7504 (9)0.1629 (7)−0.1050 (7)0.0349 (15)
H40.73810.1782−0.19600.042*
C50.7923 (7)0.3781 (6)0.1508 (6)0.0228 (12)
C60.8494 (9)0.3771 (7)0.2643 (7)0.0362 (15)
H60.87760.28830.31490.043*
C70.8667 (9)0.5053 (8)0.3064 (7)0.0368 (15)
H70.90280.50560.38680.044*
C80.8305 (9)0.6301 (8)0.2296 (7)0.0381 (16)
H80.84140.71890.25580.046*
C90.7787 (8)0.6264 (6)0.1150 (7)0.0288 (13)
H90.75410.71400.06210.035*
C100.7479 (8)0.0837 (7)0.3079 (6)0.0290 (13)
C110.6105 (9)0.1744 (7)0.4115 (7)0.0362 (15)
H110.53000.26280.38910.043*
C120.5941 (10)0.1325 (8)0.5488 (7)0.0434 (17)
H120.50140.19210.62280.052*
C130.7126 (11)0.0043 (8)0.5770 (7)0.0461 (19)
H130.7026−0.02730.67040.055*
C140.8465 (11)−0.0774 (8)0.4673 (8)0.049 (2)
H140.9305−0.16490.48740.059*
U11U22U33U12U13U23
Pd10.0345 (3)0.0262 (3)0.0292 (3)−0.0109 (2)−0.0108 (2)0.00380 (18)
Cl10.0574 (11)0.0411 (9)0.0321 (9)−0.0175 (8)−0.0211 (8)0.0073 (7)
Cl20.0506 (10)0.0293 (8)0.0514 (11)−0.0165 (7)−0.0235 (9)0.0126 (7)
N10.024 (2)0.022 (2)0.024 (3)−0.008 (2)−0.006 (2)0.0076 (19)
N20.057 (4)0.025 (3)0.036 (3)−0.013 (3)−0.019 (3)0.005 (2)
N30.027 (3)0.022 (2)0.030 (3)−0.010 (2)−0.014 (2)0.009 (2)
N40.055 (4)0.030 (3)0.036 (3)−0.006 (3)−0.022 (3)0.001 (2)
C10.032 (3)0.036 (4)0.022 (3)−0.008 (3)−0.009 (3)0.000 (3)
C20.037 (3)0.024 (3)0.030 (3)−0.007 (3)−0.008 (3)−0.004 (2)
C30.076 (5)0.032 (4)0.036 (4)−0.020 (4)−0.024 (4)−0.006 (3)
C40.059 (4)0.024 (3)0.028 (3)−0.016 (3)−0.016 (3)−0.006 (2)
C50.023 (3)0.023 (3)0.022 (3)−0.005 (2)−0.007 (2)−0.004 (2)
C60.040 (4)0.032 (3)0.039 (4)−0.010 (3)−0.017 (3)0.001 (3)
C70.034 (3)0.053 (4)0.028 (3)−0.019 (3)−0.011 (3)0.000 (3)
C80.042 (4)0.040 (4)0.032 (4)−0.018 (3)−0.004 (3)−0.007 (3)
C90.030 (3)0.020 (3)0.037 (4)−0.009 (2)−0.008 (3)−0.002 (2)
C100.037 (3)0.026 (3)0.029 (3)−0.013 (3)−0.013 (3)0.001 (2)
C110.046 (4)0.032 (4)0.033 (4)−0.014 (3)−0.013 (3)−0.002 (3)
C120.058 (5)0.050 (4)0.027 (4)−0.027 (4)−0.008 (3)0.000 (3)
C130.081 (6)0.044 (4)0.029 (4)−0.035 (4)−0.024 (4)0.009 (3)
C140.075 (6)0.040 (4)0.055 (5)−0.025 (4)−0.046 (5)0.015 (4)
Pd1—N32.035 (5)C4—H40.9500
Pd1—N12.038 (5)C5—C61.368 (8)
Pd1—Cl22.2787 (17)C6—C71.395 (9)
Pd1—Cl12.2860 (17)C6—H60.9500
N1—C41.308 (7)C7—C81.363 (9)
N1—C11.357 (7)C7—H70.9500
N2—C31.336 (8)C8—C91.362 (9)
N2—C21.338 (8)C8—H80.9500
N3—C91.323 (7)C9—H90.9500
N3—C51.377 (7)C10—C111.383 (9)
N4—C101.331 (8)C11—C121.385 (9)
N4—C141.334 (9)C11—H110.9500
C1—C21.398 (8)C12—C131.368 (10)
C1—C51.477 (8)C12—H120.9500
C2—C101.495 (8)C13—C141.373 (11)
C3—C41.367 (9)C13—H130.9500
C3—H30.9500C14—H140.9500
N3—Pd1—N180.24 (19)N3—C5—C1114.2 (5)
N3—Pd1—Cl295.40 (14)C5—C6—C7120.6 (6)
N1—Pd1—Cl2175.50 (15)C5—C6—H6119.7
N3—Pd1—Cl1174.80 (14)C7—C6—H6119.7
N1—Pd1—Cl195.27 (14)C8—C7—C6118.5 (6)
Cl2—Pd1—Cl189.14 (6)C8—C7—H7120.8
C4—N1—C1120.7 (5)C6—C7—H7120.8
C4—N1—Pd1124.3 (4)C9—C8—C7119.4 (6)
C1—N1—Pd1114.8 (4)C9—C8—H8120.3
C3—N2—C2117.3 (6)C7—C8—H8120.3
C9—N3—C5119.8 (5)N3—C9—C8122.6 (6)
C9—N3—Pd1125.0 (4)N3—C9—H9118.7
C5—N3—Pd1114.8 (4)C8—C9—H9118.7
C10—N4—C14117.3 (6)N4—C10—C11123.3 (6)
N1—C1—C2117.9 (6)N4—C10—C2115.6 (5)
N1—C1—C5114.9 (5)C11—C10—C2121.0 (6)
C2—C1—C5127.2 (5)C10—C11—C12117.9 (7)
N2—C2—C1121.4 (6)C10—C11—H11121.0
N2—C2—C10113.5 (5)C12—C11—H11121.0
C1—C2—C10125.1 (5)C13—C12—C11119.4 (7)
N2—C3—C4122.5 (6)C13—C12—H12120.3
N2—C3—H3118.8C11—C12—H12120.3
C4—C3—H3118.8C12—C13—C14118.5 (7)
N1—C4—C3119.8 (6)C12—C13—H13120.7
N1—C4—H4120.1C14—C13—H13120.7
C3—C4—H4120.1N4—C14—C13123.5 (7)
C6—C5—N3118.9 (5)N4—C14—H14118.2
C6—C5—C1126.8 (6)C13—C14—H14118.2
N3—Pd1—N1—C4−178.6 (5)Pd1—N3—C5—C1−6.1 (6)
Cl1—Pd1—N1—C4−1.2 (5)N1—C1—C5—C6−164.9 (6)
N3—Pd1—N1—C16.0 (4)C2—C1—C5—C614.1 (10)
Cl1—Pd1—N1—C1−176.7 (4)N1—C1—C5—N311.2 (7)
N1—Pd1—N3—C9173.4 (5)C2—C1—C5—N3−169.8 (6)
Cl2—Pd1—N3—C9−7.8 (5)N3—C5—C6—C73.4 (9)
N1—Pd1—N3—C50.3 (4)C1—C5—C6—C7179.2 (6)
Cl2—Pd1—N3—C5179.2 (4)C5—C6—C7—C8−1.9 (10)
C4—N1—C1—C2−5.6 (9)C6—C7—C8—C90.1 (10)
Pd1—N1—C1—C2170.0 (4)C5—N3—C9—C81.3 (9)
C4—N1—C1—C5173.5 (5)Pd1—N3—C9—C8−171.3 (5)
Pd1—N1—C1—C5−10.9 (6)C7—C8—C9—N30.1 (10)
C3—N2—C2—C1−4.7 (10)C14—N4—C10—C11−0.1 (10)
C3—N2—C2—C10172.6 (6)C14—N4—C10—C2−176.2 (6)
N1—C1—C2—N28.5 (9)N2—C2—C10—N450.6 (8)
C5—C1—C2—N2−170.5 (6)C1—C2—C10—N4−132.3 (7)
N1—C1—C2—C10−168.5 (6)N2—C2—C10—C11−125.6 (7)
C5—C1—C2—C1012.5 (10)C1—C2—C10—C1151.5 (9)
C2—N2—C3—C4−1.8 (11)N4—C10—C11—C12−0.5 (10)
C1—N1—C4—C3−0.6 (10)C2—C10—C11—C12175.4 (6)
Pd1—N1—C4—C3−175.8 (5)C10—C11—C12—C130.0 (10)
N2—C3—C4—N14.6 (12)C11—C12—C13—C141.0 (11)
C9—N3—C5—C6−3.1 (8)C10—N4—C14—C131.2 (11)
Pd1—N3—C5—C6170.3 (4)C12—C13—C14—N4−1.7 (11)
C9—N3—C5—C1−179.5 (5)
D—H···AD—HH···AD···AD—H···A
C3—H3···Cl2i0.952.733.632 (7)159
C4—H4···Cl10.952.603.216 (7)123
C8—H8···N4ii0.952.583.529 (9)178
C9—H9···Cl20.952.623.241 (7)123
C13—H13···Cl2iii0.952.763.530 (7)139
Pd1—N32.035 (5)
Pd1—N12.038 (5)
Pd1—Cl22.2787 (17)
Pd1—Cl12.2860 (17)
N3—Pd1—N180.24 (19)
Cl2—Pd1—Cl189.14 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯Cl2i0.952.733.632 (7)159
C4—H4⋯Cl10.952.603.216 (7)123
C8—H8⋯N4ii0.952.583.529 (9)178
C9—H9⋯Cl20.952.623.241 (7)123
C13—H13⋯Cl2iii0.952.763.530 (7)139

Symmetry codes: (i) ; (ii) ; (iii) .

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