Literature DB >> 22219854

Tris(pyridin-2-yl-methanol)nickel(II) hexa-fluoridophosphate trifluoro-acetate.

Tomohiko Hamaguchi1, Tomoko Nagata, Satoshi Kawata, Isao Ando.   

Abstract

In the crystal structure of the title complex, [Ni(C(6)H(7)NO)(3)](PF(6))(C(2)F(3)O(2)), the n class="Chemical">Ni(II) ion is in a slightly distorted octa-hedral NiO(3)N(3) coordination geometry with each of the three N and three O atoms in a meridional coordination. In the crystal, the complex mol-ecules and the trifluoro-acetate anions are connected via O-H⋯O hydrogen bonding into layers parallel to the ab plane.

Entities:  

Year:  2011        PMID: 22219854      PMCID: PMC3247549          DOI: 10.1107/S160053681104431X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related complexes, see: Ito & Onaka (2004 ▶); Kermagoret & Braunstein (2008 ▶).

Experimental

Crystal data

[Ni(C6H7NO)3](PF6)(C2F3O2) M = 644.08 Triclinic, a = 9.6381 (2) Å b = 11.9668 (4) Å c = 11.9892 (3) Å α = 109.950 (1)° β = 95.348 (1)° γ = 101.411 (1)° V = 1254.60 (6) Å3 Z = 2 Mo Kα radiation μ = 0.94 mm−1 T = 200 K 0.40 × 0.30 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Rigaku, 1995 ▶) T min = 0.813, T max = 1.000 12517 measured reflections 5736 independent reflections 5234 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.088 S = 1.05 5736 reflections 376 parameters 9 restraints H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.45 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2002 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Yadokari-XG (Wakita, 2001 ▶; Kabuto et al., 2009 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: Yadokari-XG and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681104431X/nc2249sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104431X/nc2249Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H7NO)3](PF6)(C2F3O2)V = 1254.60 (6) Å3
Mr = 644.08Z = 2
Triclinic, P1F(000) = 652
Hall symbol: -P 1Dx = 1.705 Mg m3
a = 9.6381 (2) ÅMo Kα radiation, λ = 0.71075 Å
b = 11.9668 (4) ŵ = 0.94 mm1
c = 11.9892 (3) ÅT = 200 K
α = 109.950 (1)°Block, blue
β = 95.348 (1)°0.40 × 0.30 × 0.20 mm
γ = 101.411 (1)°
Rigaku R-AXIS RAPID diffractometer5234 reflections with I > 2σ(I)
graphiteRint = 0.018
ω scansθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Rigaku, 1995)h = −12→11
Tmin = 0.813, Tmax = 1.000k = −15→15
12517 measured reflectionsl = −15→15
5736 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0486P)2 + 0.5841P] where P = (Fo2 + 2Fc2)/3
5736 reflections(Δ/σ)max = 0.001
376 parametersΔρmax = 0.50 e Å3
9 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Ni10.18393 (2)0.369025 (18)0.808996 (17)0.02212 (7)
O10.00845 (13)0.39356 (12)0.88953 (12)0.0304 (3)
H1−0.05960.41980.86090.046*
O20.35252 (13)0.32008 (12)0.72559 (12)0.0337 (3)
H20.44250.37330.75470.051*
O30.33165 (14)0.49798 (11)0.95482 (11)0.0316 (3)
H30.34310.51041.04080.047*
N10.16982 (15)0.24566 (12)0.89561 (13)0.0257 (3)
N20.07694 (15)0.24685 (13)0.64160 (13)0.0264 (3)
N30.20297 (15)0.52595 (13)0.76794 (12)0.0255 (3)
C10.26677 (19)0.17914 (16)0.90061 (18)0.0338 (4)
H40.33810.17750.85090.041*
C20.2656 (2)0.11372 (19)0.9755 (2)0.0447 (5)
H50.33430.06700.97650.054*
C30.1636 (3)0.1169 (2)1.0488 (2)0.0530 (6)
H60.16240.07401.10250.064*
C40.0627 (2)0.1836 (2)1.0432 (2)0.0458 (5)
H7−0.00930.18641.09240.055*
C50.06813 (18)0.24611 (15)0.96467 (16)0.0286 (3)
C6−0.04137 (18)0.31692 (16)0.95294 (17)0.0297 (4)
H8−0.13470.25960.90860.036*
H9−0.05530.36741.03380.036*
C7−0.06644 (19)0.20268 (16)0.60926 (16)0.0306 (4)
H10−0.12540.22630.66810.037*
C8−0.1309 (2)0.12438 (17)0.49383 (18)0.0377 (4)
H11−0.23240.09450.47340.045*
C9−0.0448 (2)0.09037 (18)0.40852 (18)0.0418 (5)
H12−0.08660.03720.32820.050*
C100.1021 (2)0.13424 (19)0.44087 (17)0.0400 (4)
H130.16280.11170.38330.048*
C110.1602 (2)0.21193 (17)0.55887 (16)0.0317 (4)
C120.3203 (2)0.2616 (2)0.59846 (19)0.0488 (6)
H140.36900.19390.57240.059*
H150.35580.32110.56070.059*
C130.1246 (2)0.53539 (18)0.67400 (16)0.0345 (4)
H160.05280.46560.62170.041*
C140.1440 (2)0.6415 (2)0.6504 (2)0.0446 (5)
H170.08600.64510.58380.054*
C150.2493 (2)0.7428 (2)0.7254 (2)0.0459 (5)
H180.26640.81680.71020.055*
C160.3291 (2)0.73469 (18)0.82255 (19)0.0375 (4)
H190.40150.80340.87570.045*
C170.30264 (17)0.62549 (15)0.84201 (15)0.0255 (3)
C180.38677 (18)0.61428 (15)0.94787 (16)0.0282 (3)
H200.48920.62380.93930.034*
H210.38050.68011.02300.034*
P10.59552 (5)0.02974 (4)0.74358 (4)0.03228 (11)
F40.5841 (2)0.0626 (2)0.88218 (15)0.0891 (6)
F50.61092 (18)0.00030 (18)0.60798 (13)0.0725 (5)
F60.76632 (13)0.04945 (12)0.77770 (13)0.0494 (3)
F70.61897 (16)0.17125 (12)0.76545 (17)0.0680 (5)
F80.42616 (14)0.01136 (14)0.71068 (15)0.0597 (4)
F90.57607 (18)−0.10966 (14)0.7258 (2)0.0789 (5)
F1A0.2162 (3)0.4114 (5)0.3777 (4)0.0633 (9)0.60
F2A0.4293 (6)0.4201 (7)0.3364 (5)0.0959 (18)0.60
F3A0.3715 (5)0.5861 (4)0.4479 (2)0.0956 (15)0.60
F1B0.2326 (11)0.3584 (9)0.3289 (9)0.075 (3)*0.24
F2B0.4556 (11)0.4729 (9)0.3644 (10)0.048 (2)*0.24
F3B0.3095 (15)0.5496 (11)0.4460 (11)0.097 (4)*0.24
F1C0.3378 (19)0.3456 (13)0.2889 (13)0.091 (4)*0.16
F2C0.4376 (13)0.5252 (12)0.4082 (13)0.063 (3)*0.16
F3C0.2240 (13)0.4706 (12)0.4110 (11)0.054 (3)*0.16
O40.15453 (15)0.51056 (17)0.21720 (16)0.0494 (4)
O50.38100 (14)0.53211 (14)0.18470 (12)0.0372 (3)
C190.28069 (19)0.50937 (18)0.23870 (16)0.0320 (4)
C200.3227 (3)0.4746 (3)0.3470 (2)0.0605 (7)
U11U22U33U12U13U23
Ni10.01984 (11)0.02370 (12)0.02007 (11)0.00408 (8)0.00167 (7)0.00581 (8)
O10.0279 (6)0.0369 (7)0.0343 (7)0.0153 (5)0.0108 (5)0.0175 (6)
O20.0225 (6)0.0426 (7)0.0292 (6)0.0059 (5)0.0058 (5)0.0058 (5)
O30.0354 (7)0.0307 (6)0.0223 (6)−0.0020 (5)−0.0054 (5)0.0102 (5)
N10.0229 (6)0.0228 (6)0.0273 (7)0.0037 (5)−0.0003 (5)0.0064 (5)
N20.0275 (7)0.0248 (7)0.0227 (7)0.0042 (5)0.0015 (5)0.0055 (5)
N30.0244 (7)0.0279 (7)0.0217 (7)0.0032 (5)0.0020 (5)0.0085 (5)
C10.0264 (8)0.0289 (9)0.0426 (10)0.0080 (7)0.0000 (7)0.0099 (8)
C20.0370 (10)0.0365 (10)0.0634 (14)0.0103 (8)−0.0038 (9)0.0243 (10)
C30.0543 (13)0.0514 (13)0.0652 (15)0.0095 (10)0.0025 (11)0.0402 (12)
C40.0453 (12)0.0497 (12)0.0522 (13)0.0087 (9)0.0137 (10)0.0313 (11)
C50.0263 (8)0.0252 (8)0.0304 (8)0.0019 (6)0.0023 (6)0.0085 (7)
C60.0247 (8)0.0284 (8)0.0344 (9)0.0035 (6)0.0079 (7)0.0105 (7)
C70.0280 (8)0.0312 (9)0.0293 (9)0.0016 (7)−0.0013 (7)0.0117 (7)
C80.0383 (10)0.0316 (9)0.0357 (10)−0.0020 (7)−0.0101 (8)0.0131 (8)
C90.0574 (13)0.0314 (9)0.0267 (9)0.0082 (9)−0.0084 (8)0.0040 (8)
C100.0544 (12)0.0372 (10)0.0248 (9)0.0169 (9)0.0052 (8)0.0044 (8)
C110.0346 (9)0.0300 (9)0.0269 (8)0.0094 (7)0.0046 (7)0.0051 (7)
C120.0325 (10)0.0682 (15)0.0309 (10)0.0091 (9)0.0099 (8)0.0007 (10)
C130.0352 (9)0.0379 (10)0.0258 (8)0.0003 (7)−0.0039 (7)0.0132 (7)
C140.0460 (11)0.0492 (12)0.0394 (11)0.0012 (9)−0.0067 (9)0.0269 (10)
C150.0483 (12)0.0403 (11)0.0511 (13)0.0000 (9)−0.0021 (10)0.0282 (10)
C160.0339 (9)0.0326 (9)0.0414 (10)−0.0022 (7)−0.0023 (8)0.0159 (8)
C170.0210 (7)0.0298 (8)0.0247 (8)0.0049 (6)0.0050 (6)0.0092 (7)
C180.0257 (8)0.0256 (8)0.0283 (8)0.0018 (6)−0.0021 (6)0.0080 (7)
P10.0319 (2)0.0294 (2)0.0314 (2)0.00634 (18)0.00592 (18)0.00648 (19)
F40.0957 (13)0.1473 (19)0.0426 (9)0.0587 (13)0.0304 (9)0.0368 (11)
F50.0719 (10)0.1113 (14)0.0344 (7)0.0355 (10)0.0129 (7)0.0187 (8)
F60.0357 (6)0.0454 (7)0.0592 (8)0.0106 (5)0.0001 (5)0.0114 (6)
F70.0577 (9)0.0331 (7)0.1023 (13)0.0123 (6)−0.0049 (8)0.0157 (8)
F80.0328 (7)0.0575 (8)0.0740 (10)0.0086 (6)0.0046 (6)0.0086 (7)
F90.0600 (9)0.0381 (7)0.1392 (17)0.0055 (7)0.0159 (10)0.0374 (9)
F1A0.0651 (18)0.089 (3)0.061 (2)0.0150 (19)0.0181 (15)0.059 (2)
F2A0.082 (3)0.167 (5)0.110 (4)0.085 (4)0.032 (3)0.105 (4)
F3A0.075 (2)0.159 (4)0.0224 (12)−0.018 (3)−0.0068 (13)0.0261 (17)
O40.0281 (7)0.0754 (11)0.0610 (10)0.0183 (7)0.0077 (6)0.0425 (9)
O50.0281 (6)0.0558 (8)0.0263 (6)0.0041 (6)0.0028 (5)0.0171 (6)
C190.0276 (8)0.0416 (10)0.0291 (9)0.0093 (7)0.0032 (7)0.0158 (8)
C200.0362 (11)0.114 (2)0.0521 (14)0.0214 (13)0.0112 (10)0.0533 (16)
Ni1—O12.0461 (12)C10—C111.389 (3)
Ni1—N22.0601 (14)C10—H130.9500
Ni1—O22.0647 (12)C11—C121.506 (3)
Ni1—N12.0662 (14)C12—H140.9900
Ni1—O32.0714 (12)C12—H150.9900
Ni1—N32.0769 (14)C13—C141.374 (3)
O1—C61.421 (2)C13—H160.9500
O1—H10.8716C14—C151.381 (3)
O2—C121.417 (2)C14—H170.9500
O2—H20.9235C15—C161.377 (3)
O3—C181.422 (2)C15—H180.9500
O3—H30.9822C16—C171.384 (3)
N1—C51.340 (2)C16—H190.9500
N1—C11.352 (2)C17—C181.501 (2)
N2—C111.342 (2)C18—H200.9900
N2—C71.346 (2)C18—H210.9900
N3—C171.340 (2)P1—F51.5697 (15)
N3—C131.347 (2)P1—F91.5777 (15)
C1—C21.377 (3)P1—F71.5881 (14)
C1—H40.9500P1—F41.5915 (16)
C2—C31.376 (4)P1—F81.5960 (14)
C2—H50.9500P1—F61.6087 (13)
C3—C41.385 (3)F1A—C201.308 (4)
C3—H60.9500F2A—C201.316 (4)
C4—C51.387 (3)F3A—C201.417 (5)
C4—H70.9500F1B—C201.420 (10)
C5—C61.503 (2)F2B—C201.284 (11)
C6—H80.9900F3B—C201.255 (12)
C6—H90.9900F1C—C201.505 (14)
C7—C81.380 (3)F2C—C201.188 (11)
C7—H100.9500F3C—C201.279 (12)
C8—C91.381 (3)O4—C191.223 (2)
C8—H110.9500O5—C191.249 (2)
C9—C101.376 (3)C19—C201.536 (3)
C9—H120.9500
O1—Ni1—N298.09 (6)N2—C11—C10121.78 (18)
O1—Ni1—O2172.33 (5)N2—C11—C12117.35 (16)
O1—Ni1—N178.11 (5)C10—C11—C12120.87 (18)
N2—Ni1—O278.53 (5)O2—C12—C11109.50 (16)
N2—Ni1—N197.35 (6)O2—C12—H14109.8
O2—Ni1—N195.41 (6)C11—C12—H14109.8
O1—Ni1—O395.00 (5)O2—C12—H15109.8
N2—Ni1—O3166.15 (6)C11—C12—H15109.8
O2—Ni1—O389.01 (5)H14—C12—H15108.2
N1—Ni1—O389.74 (5)N3—C13—C14122.91 (17)
O1—Ni1—N393.77 (5)N3—C13—H16118.5
N2—Ni1—N396.49 (6)C14—C13—H16118.5
O2—Ni1—N393.45 (6)C13—C14—C15118.77 (18)
N1—Ni1—N3164.81 (6)C13—C14—H17120.6
O3—Ni1—N378.09 (5)C15—C14—H17120.6
C6—O1—Ni1118.49 (10)C16—C15—C14118.86 (18)
C6—O1—H1112.8C16—C15—H18120.6
Ni1—O1—H1122.2C14—C15—H18120.6
C12—O2—Ni1115.90 (11)C15—C16—C17119.37 (18)
C12—O2—H2114.4C15—C16—H19120.3
Ni1—O2—H2118.1C17—C16—H19120.3
C18—O3—Ni1117.12 (10)N3—C17—C16122.05 (16)
C18—O3—H3106.7N3—C17—C18117.36 (15)
Ni1—O3—H3130.7C16—C17—C18120.58 (15)
C5—N1—C1118.61 (16)O3—C18—C17110.11 (13)
C5—N1—Ni1116.13 (11)O3—C18—H20109.6
C1—N1—Ni1124.57 (13)C17—C18—H20109.6
C11—N2—C7118.69 (15)O3—C18—H21109.6
C11—N2—Ni1115.61 (12)C17—C18—H21109.6
C7—N2—Ni1125.69 (12)H20—C18—H21108.2
C17—N3—C13118.01 (15)F5—P1—F990.77 (11)
C17—N3—Ni1116.35 (11)F5—P1—F790.50 (11)
C13—N3—Ni1125.64 (12)F9—P1—F7178.09 (10)
N1—C1—C2122.16 (19)F5—P1—F4178.33 (12)
N1—C1—H4118.9F9—P1—F490.26 (12)
C2—C1—H4118.9F7—P1—F488.43 (12)
C3—C2—C1119.20 (19)F5—P1—F890.97 (9)
C3—C2—H5120.4F9—P1—F891.58 (9)
C1—C2—H5120.4F7—P1—F889.83 (8)
C2—C3—C4119.1 (2)F4—P1—F890.31 (10)
C2—C3—H6120.5F5—P1—F689.37 (8)
C4—C3—H6120.5F9—P1—F688.81 (8)
C3—C4—C5119.1 (2)F7—P1—F689.77 (7)
C3—C4—H7120.5F4—P1—F689.35 (9)
C5—C4—H7120.5F8—P1—F6179.48 (9)
N1—C5—C4121.87 (17)O4—C19—O5129.17 (18)
N1—C5—C6117.09 (15)O4—C19—C20115.85 (17)
C4—C5—C6121.03 (17)O5—C19—C20114.97 (16)
O1—C6—C5108.67 (14)F2C—C20—F3C111.5 (9)
O1—C6—H8110.0F3B—C20—F2B102.8 (7)
C5—C6—H8110.0F1A—C20—F2A109.8 (4)
O1—C6—H9110.0F1A—C20—F3A104.4 (3)
C5—C6—H9110.0F2A—C20—F3A106.6 (4)
H8—C6—H9108.3F3B—C20—F1B108.1 (7)
N2—C7—C8122.40 (18)F2B—C20—F1B110.5 (6)
N2—C7—H10118.8F2C—C20—F1C102.0 (9)
C8—C7—H10118.8F3C—C20—F1C107.2 (8)
C7—C8—C9118.65 (18)F2C—C20—C19118.3 (6)
C7—C8—H11120.7F3B—C20—C19113.8 (6)
C9—C8—H11120.7F3C—C20—C19113.1 (6)
C10—C9—C8119.43 (18)F2B—C20—C19113.3 (5)
C10—C9—H12120.3F1A—C20—C19115.0 (2)
C8—C9—H12120.3F2A—C20—C19113.6 (3)
C9—C10—C11119.03 (19)F3A—C20—C19106.5 (3)
C9—C10—H13120.5F1B—C20—C19108.2 (4)
C11—C10—H13120.5F1C—C20—C19103.1 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.871.762.6003 (19)162.5
O2—H2···O5ii0.921.772.6965 (18)175.8
O3—H3···O5iii0.981.652.6267 (18)173.8
Ni1—O12.0461 (12)
Ni1—N22.0601 (14)
Ni1—O22.0647 (12)
Ni1—N12.0662 (14)
Ni1—O32.0714 (12)
Ni1—N32.0769 (14)
O1—Ni1—N178.11 (5)
N2—Ni1—O278.53 (5)
O3—Ni1—N378.09 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.871.762.6003 (19)162.5
O2—H2⋯O5ii0.921.772.6965 (18)175.8
O3—H3⋯O5iii0.981.652.6267 (18)173.8

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of nickel complexes with bidentate N,O-type ligands and application in the catalytic oligomerization of ethylene.

Authors:  Anthony Kermagoret; Pierre Braunstein
Journal:  Dalton Trans       Date:  2008-02-19       Impact factor: 4.390

  2 in total
  1 in total

1.  Structure of tri-aqua-tris-(1,1,1-tri-fluoro-4-oxo-pentan-2-olato)cerium(III) as a possible fluorescent compound.

Authors:  Atsuya Koizumi; Takuya Hasegawa; Atsushi Itadani; Kenji Toda; Taoyun Zhu; Mineo Sato
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-01-26
  1 in total

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