Literature DB >> 22219776

(RS)-Tricarbon-yl(η-1,3-diacet-oxy-5,5-dimethyl-cyclo-hexa-1,3-diene)iron(0).

Steffen Romanski1, Jörg-M Neudörfl, Hans-Günther Schmalz.   

Abstract

In the title compound, [Fe(C(12)H(16)O(4))(CO)(3)], the diene moiety of the mol-ecule is virtually planar, with a C-C-C-C torsion angle of -1.4 (2)°. The six-membered ring exhibits a boat conformation, with torsion angles of 46.2 (2) and 46.5 (3)° for a double-bond and the two attached Csp(3) atoms. The Fe atom is coordinated to all four of the diene C atoms, with bond lengths between 2.041 (2) and 2.117 (2) Å. The Fe(CO)(3) tripod adopts a conformation with one CO ligand eclipsing the Csp(3)-Csp(3) single bond.

Entities:  

Year:  2011        PMID: 22219776      PMCID: PMC3246956          DOI: 10.1107/S1600536811041298

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a short overview of CO as a signaling mol­ecule and of CO-releasing mol­ecules (CO-RMs), see: Choi & Otterbein (2002 ▶); Johnson et al. (2003 ▶); Alberto & Motterlini (2007 ▶); Mann & Motterlini (2007 ▶). For a very recent review of the biological activity of carbon monoxide gas and CO-RMs, see: Motterlini & Otterbein (2010 ▶). For the first use of the title compound as a CO-RM, see: Romanski et al. (2011 ▶). For a known synthesis of this mol­ecule in racemic form, see: Boháč et al. (1996 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

[Fe(C12H16O4)(CO)3] M = 364.13 Monoclinic, a = 10.9977 (6) Å b = 11.9586 (5) Å c = 13.0364 (5) Å β = 108.739 (3)° V = 1623.63 (13) Å3 Z = 4 Mo Kα radiation μ = 0.96 mm−1 T = 100 K 0.30 × 0.15 × 0.07 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (PLATON; Spek, 2009 ▶) T min = 0.700, T max = 0.931 15588 measured reflections 3538 independent reflections 2814 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.078 S = 1.06 3538 reflections 212 parameters H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.62 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: DENZO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SCHAKAL99 (Keller, 1999 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041298/rk2295sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041298/rk2295Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(C12H16O4)(CO)3]F(000) = 752
Mr = 364.13Dx = 1.490 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 15588 reflections
a = 10.9977 (6) Åθ = 2.0–27.0°
b = 11.9586 (5) ŵ = 0.96 mm1
c = 13.0364 (5) ÅT = 100 K
β = 108.739 (3)°Prism, colourless
V = 1623.63 (13) Å30.3 × 0.15 × 0.07 mm
Z = 4
Nonius KappaCCD diffractometer3538 independent reflections
Radiation source: fine–focus sealed tube2814 reflections with I > 2σ(I)
graphiteRint = 0.059
φ and ω scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (PLATON; Spek, 2009)h = −14→13
Tmin = 0.700, Tmax = 0.931k = −14→15
15588 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0353P)2 + 0.1094P] where P = (Fo2 + 2Fc2)/3
3538 reflections(Δ/σ)max = 0.001
212 parametersΔρmax = 0.66 e Å3
0 restraintsΔρmin = −0.62 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
Fe10.66661 (3)0.30437 (2)0.424274 (19)0.01185 (9)
O10.94976 (13)0.27963 (10)0.43516 (10)0.0147 (3)
O20.86658 (15)0.20345 (11)0.26861 (10)0.0227 (3)
O30.68135 (13)0.47430 (10)0.60010 (9)0.0141 (3)
O40.86120 (14)0.57754 (12)0.67162 (11)0.0229 (3)
O50.41698 (15)0.28056 (11)0.46063 (11)0.0204 (3)
O60.75961 (16)0.08729 (12)0.52412 (12)0.0301 (4)
O70.57537 (14)0.24054 (12)0.19457 (10)0.0220 (3)
C10.84627 (19)0.35591 (15)0.42037 (14)0.0126 (4)
C20.8298 (2)0.38305 (15)0.52183 (14)0.0142 (4)
H20.88650.35890.58980.017*
C30.72175 (19)0.44864 (15)0.51032 (14)0.0127 (4)
C40.64858 (19)0.47985 (15)0.40352 (13)0.0123 (4)
H40.55760.47360.37890.015*
C50.72083 (19)0.52401 (15)0.32899 (14)0.0141 (4)
C60.8340 (2)0.44474 (15)0.33460 (14)0.0152 (4)
H6A0.81930.40870.26330.018*
H6B0.91470.48830.35230.018*
C70.6296 (2)0.53454 (16)0.21245 (14)0.0180 (4)
H7A0.55860.58470.21100.027*
H7B0.59550.46060.18560.027*
H7C0.67650.56500.16630.027*
C80.7709 (2)0.64176 (16)0.37013 (16)0.0202 (5)
H8A0.69880.68900.37200.030*
H8B0.81260.67500.32130.030*
H8C0.83310.63600.44320.030*
C90.9517 (2)0.20967 (15)0.35318 (15)0.0174 (4)
C101.0733 (2)0.14411 (19)0.38555 (17)0.0262 (5)
H10A1.06770.08490.33230.039*
H10B1.08690.11060.45700.039*
H10C1.14530.19370.38870.039*
C110.7642 (2)0.53864 (15)0.67896 (14)0.0153 (4)
C120.7140 (2)0.55145 (17)0.77265 (14)0.0194 (5)
H12A0.63390.59440.74960.029*
H12B0.77770.59090.83180.029*
H12C0.69770.47740.79770.029*
C130.5151 (2)0.29061 (15)0.44952 (14)0.0148 (4)
C140.7219 (2)0.17132 (17)0.48471 (15)0.0186 (5)
C150.6127 (2)0.26595 (16)0.28408 (15)0.0157 (4)
U11U22U33U12U13U23
Fe10.01399 (17)0.01153 (15)0.01009 (14)0.00017 (12)0.00396 (11)−0.00037 (10)
O10.0157 (8)0.0155 (7)0.0131 (6)0.0044 (6)0.0049 (6)−0.0016 (5)
O20.0245 (9)0.0251 (8)0.0161 (7)0.0045 (7)0.0034 (6)−0.0063 (6)
O30.0159 (8)0.0169 (7)0.0107 (6)−0.0001 (6)0.0061 (5)−0.0034 (5)
O40.0199 (9)0.0266 (8)0.0235 (7)−0.0063 (7)0.0088 (6)−0.0079 (6)
O50.0189 (9)0.0234 (8)0.0205 (7)−0.0015 (6)0.0083 (6)−0.0010 (6)
O60.0403 (11)0.0190 (9)0.0315 (8)0.0094 (8)0.0124 (8)0.0088 (7)
O70.0239 (9)0.0271 (8)0.0131 (7)−0.0021 (7)0.0032 (6)−0.0037 (6)
C10.0101 (11)0.0124 (10)0.0141 (9)0.0013 (8)0.0024 (8)−0.0006 (7)
C20.0142 (11)0.0138 (10)0.0128 (9)−0.0026 (8)0.0019 (8)−0.0025 (7)
C30.0157 (11)0.0109 (10)0.0127 (9)−0.0035 (8)0.0062 (8)−0.0036 (7)
C40.0108 (11)0.0120 (10)0.0131 (9)−0.0037 (8)0.0023 (8)−0.0016 (7)
C50.0157 (11)0.0134 (10)0.0139 (9)0.0007 (8)0.0060 (8)0.0007 (7)
C60.0163 (12)0.0156 (10)0.0144 (9)−0.0014 (8)0.0060 (8)−0.0001 (7)
C70.0204 (12)0.0198 (11)0.0155 (9)0.0033 (9)0.0081 (8)0.0036 (8)
C80.0229 (13)0.0160 (11)0.0246 (11)−0.0028 (9)0.0115 (9)0.0002 (8)
C90.0233 (13)0.0142 (11)0.0171 (10)0.0022 (9)0.0098 (9)−0.0005 (8)
C100.0265 (14)0.0272 (12)0.0244 (11)0.0099 (10)0.0075 (10)−0.0038 (9)
C110.0189 (12)0.0124 (10)0.0129 (9)0.0026 (8)0.0030 (8)−0.0010 (7)
C120.0244 (13)0.0212 (11)0.0137 (9)−0.0005 (9)0.0076 (9)−0.0044 (8)
C130.0207 (12)0.0128 (10)0.0102 (9)0.0001 (8)0.0039 (8)−0.0013 (7)
C140.0203 (12)0.0221 (12)0.0150 (9)−0.0026 (9)0.0081 (8)−0.0033 (8)
C150.0154 (12)0.0136 (10)0.0200 (10)−0.0006 (8)0.0081 (9)0.0016 (8)
Fe1—C151.7907 (19)C4—C51.533 (2)
Fe1—C141.793 (2)C4—H40.9500
Fe1—C131.807 (2)C5—C71.533 (3)
Fe1—C32.0410 (18)C5—C81.544 (3)
Fe1—C22.0632 (19)C5—C61.547 (3)
Fe1—C12.086 (2)C6—H6A0.9900
Fe1—C42.1171 (18)C6—H6B0.9900
O1—C91.363 (2)C7—H7A0.9800
O1—C11.423 (2)C7—H7B0.9800
O2—C91.197 (2)C7—H7C0.9800
O3—C111.370 (2)C8—H8A0.9800
O3—C31.413 (2)C8—H8B0.9800
O4—C111.195 (2)C8—H8C0.9800
O5—C131.140 (2)C9—C101.490 (3)
O6—C141.144 (2)C10—H10A0.9800
O7—C151.147 (2)C10—H10B0.9800
C1—C21.429 (2)C10—H10C0.9800
C1—C61.517 (2)C11—C121.501 (2)
C2—C31.391 (3)C12—H12A0.9800
C2—H20.9500C12—H12B0.9800
C3—C41.416 (2)C12—H12C0.9800
C15—Fe1—C14100.09 (9)Fe1—C4—H490.6
C15—Fe1—C1398.05 (9)C4—C5—C7110.43 (16)
C14—Fe1—C1392.40 (9)C4—C5—C8107.07 (14)
C15—Fe1—C3136.08 (8)C7—C5—C8108.42 (15)
C14—Fe1—C3120.64 (8)C4—C5—C6109.38 (15)
C13—Fe1—C396.05 (8)C7—C5—C6110.93 (14)
C15—Fe1—C2133.11 (8)C8—C5—C6110.52 (17)
C14—Fe1—C291.64 (8)C1—C6—C5110.10 (15)
C13—Fe1—C2126.85 (8)C1—C6—H6A109.6
C3—Fe1—C239.62 (7)C5—C6—H6A109.6
C15—Fe1—C193.24 (8)C1—C6—H6B109.6
C14—Fe1—C194.73 (8)C5—C6—H6B109.6
C13—Fe1—C1165.38 (8)H6A—C6—H6B108.2
C3—Fe1—C169.34 (7)C5—C7—H7A109.5
C2—Fe1—C140.28 (7)C5—C7—H7B109.5
C15—Fe1—C497.89 (8)H7A—C7—H7B109.5
C14—Fe1—C4160.13 (8)C5—C7—H7C109.5
C13—Fe1—C493.41 (8)H7A—C7—H7C109.5
C3—Fe1—C439.77 (7)H7B—C7—H7C109.5
C2—Fe1—C469.75 (7)C5—C8—H8A109.5
C1—Fe1—C475.79 (7)C5—C8—H8B109.5
C9—O1—C1120.04 (15)H8A—C8—H8B109.5
C11—O3—C3115.66 (15)C5—C8—H8C109.5
O1—C1—C2110.73 (15)H8A—C8—H8C109.5
O1—C1—C6115.27 (15)H8B—C8—H8C109.5
C2—C1—C6121.04 (16)O2—C9—O1123.76 (18)
O1—C1—Fe1122.01 (12)O2—C9—C10126.38 (17)
C2—C1—Fe169.01 (11)O1—C9—C10109.86 (17)
C6—C1—Fe1111.37 (13)C9—C10—H10A109.5
C3—C2—C1112.72 (16)C9—C10—H10B109.5
C3—C2—Fe169.33 (11)H10A—C10—H10B109.5
C1—C2—Fe170.71 (11)C9—C10—H10C109.5
C3—C2—H2123.6H10A—C10—H10C109.5
C1—C2—H2123.6H10B—C10—H10C109.5
Fe1—C2—H2128.1O4—C11—O3123.65 (17)
C2—C3—O3121.22 (16)O4—C11—C12126.61 (18)
C2—C3—C4116.78 (16)O3—C11—C12109.74 (17)
O3—C3—C4121.78 (17)C11—C12—H12A109.5
C2—C3—Fe171.05 (11)C11—C12—H12B109.5
O3—C3—Fe1121.47 (12)H12A—C12—H12B109.5
C4—C3—Fe173.01 (10)C11—C12—H12C109.5
C3—C4—C5117.86 (17)H12A—C12—H12C109.5
C3—C4—Fe167.22 (10)H12B—C12—H12C109.5
C5—C4—Fe1112.09 (12)O5—C13—Fe1176.88 (16)
C3—C4—H4121.1O6—C14—Fe1178.7 (2)
C5—C4—H4121.1O7—C15—Fe1178.33 (18)
C9—O1—C1—C2153.86 (16)C14—Fe1—C3—O3−67.18 (18)
C9—O1—C1—C6−64.1 (2)C13—Fe1—C3—O329.24 (16)
C9—O1—C1—Fe176.28 (18)C2—Fe1—C3—O3−115.62 (19)
C15—Fe1—C1—C2172.64 (12)C1—Fe1—C3—O3−150.23 (16)
C14—Fe1—C1—C2−86.95 (12)C4—Fe1—C3—O3117.3 (2)
C13—Fe1—C1—C232.0 (3)C15—Fe1—C3—C420.20 (17)
C3—Fe1—C1—C234.07 (11)C14—Fe1—C3—C4175.53 (12)
C4—Fe1—C1—C275.32 (11)C13—Fe1—C3—C4−88.06 (12)
C15—Fe1—C1—C656.35 (13)C2—Fe1—C3—C4127.08 (16)
C14—Fe1—C1—C6156.76 (13)C1—Fe1—C3—C492.47 (12)
C13—Fe1—C1—C6−84.3 (3)C2—C3—C4—C5−46.2 (2)
C3—Fe1—C1—C6−82.22 (13)O3—C3—C4—C5139.23 (17)
C2—Fe1—C1—C6−116.29 (17)Fe1—C3—C4—C5−103.85 (15)
C4—Fe1—C1—C6−40.97 (12)C2—C3—C4—Fe157.69 (15)
O1—C1—C2—C3−174.00 (16)O3—C3—C4—Fe1−116.92 (17)
C6—C1—C2—C346.5 (3)C15—Fe1—C4—C3−166.01 (12)
Fe1—C1—C2—C3−56.50 (14)C14—Fe1—C4—C3−11.4 (3)
O1—C1—C2—Fe1−117.50 (14)C13—Fe1—C4—C395.37 (12)
C6—C1—C2—Fe1102.98 (17)C2—Fe1—C4—C3−32.83 (11)
C15—Fe1—C2—C3114.62 (13)C1—Fe1—C4—C3−74.64 (11)
C14—Fe1—C2—C3−139.90 (11)C15—Fe1—C4—C5−53.89 (14)
C13—Fe1—C2—C3−45.67 (14)C14—Fe1—C4—C5100.7 (2)
C1—Fe1—C2—C3124.71 (15)C13—Fe1—C4—C5−152.51 (13)
C4—Fe1—C2—C332.95 (10)C3—Fe1—C4—C5112.12 (18)
C15—Fe1—C2—C1−10.09 (16)C2—Fe1—C4—C579.29 (13)
C14—Fe1—C2—C195.39 (11)C1—Fe1—C4—C537.48 (13)
C13—Fe1—C2—C1−170.38 (11)C3—C4—C5—C7170.42 (16)
C3—Fe1—C2—C1−124.71 (15)Fe1—C4—C5—C795.38 (15)
C4—Fe1—C2—C1−91.76 (11)C3—C4—C5—C8−71.7 (2)
C1—C2—C3—O3173.19 (16)Fe1—C4—C5—C8−146.77 (13)
Fe1—C2—C3—O3115.93 (16)C3—C4—C5—C648.1 (2)
C1—C2—C3—C4−1.4 (2)Fe1—C4—C5—C6−26.98 (18)
Fe1—C2—C3—C4−58.71 (15)O1—C1—C6—C5−178.32 (15)
C1—C2—C3—Fe157.27 (14)C2—C1—C6—C5−40.5 (2)
C11—O3—C3—C264.8 (2)Fe1—C1—C6—C537.17 (18)
C11—O3—C3—C4−120.82 (19)C4—C5—C6—C1−6.0 (2)
C11—O3—C3—Fe1150.55 (14)C7—C5—C6—C1−128.02 (16)
C15—Fe1—C3—C2−106.89 (14)C8—C5—C6—C1111.68 (17)
C14—Fe1—C3—C248.44 (14)C1—O1—C9—O2−4.1 (3)
C13—Fe1—C3—C2144.86 (11)C1—O1—C9—C10176.09 (16)
C1—Fe1—C3—C2−34.61 (10)C3—O3—C11—O44.5 (3)
C4—Fe1—C3—C2−127.08 (16)C3—O3—C11—C12−175.53 (15)
C15—Fe1—C3—O3137.49 (15)
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Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Chemistry and biological activities of CO-releasing molecules (CORMs) and transition metal complexes.

Authors:  Roger Alberto; Roberto Motterlini
Journal:  Dalton Trans       Date:  2007-04-03       Impact factor: 4.390

Review 3.  CO and NO in medicine.

Authors:  Brian E Mann; Roberto Motterlini
Journal:  Chem Commun (Camb)       Date:  2007-11-07       Impact factor: 6.222

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Acyloxybutadiene iron tricarbonyl complexes as enzyme-triggered CO-releasing molecules (ET-CORMs).

Authors:  Steffen Romanski; Birgit Kraus; Ulrich Schatzschneider; Jörg-Martin Neudörfl; Sabine Amslinger; Hans-Günther Schmalz
Journal:  Angew Chem Int Ed Engl       Date:  2011-02-14       Impact factor: 15.336

6.  Emerging role of carbon monoxide in physiologic and pathophysiologic states.

Authors:  Augustine M K Choi; Leo E Otterbein
Journal:  Antioxid Redox Signal       Date:  2002-04       Impact factor: 8.401

Review 7.  The therapeutic potential of carbon monoxide.

Authors:  Roberto Motterlini; Leo E Otterbein
Journal:  Nat Rev Drug Discov       Date:  2010-09       Impact factor: 84.694

8.  Metal carbonyls: a new class of pharmaceuticals?

Authors:  Tony R Johnson; Brian E Mann; James E Clark; Roberta Foresti; Colin J Green; Roberto Motterlini
Journal:  Angew Chem Int Ed Engl       Date:  2003-08-18       Impact factor: 15.336

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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