Literature DB >> 22219759

A potential anti-cancer agent: 5-chloro-7-iodo-8-hy-droxy-quinolinium dichlorido(5-chloro-7-iodo-quinolin-8-olato-κN,O)palladium(II) dihydrate.

Peter Vranec1, Ivan Potočňák.   

Abstract

The title Pd(II) coordination compound, (C(9)H(6)ClINO)[PdCl(2)(C(9)H(4)ClINO)]·2H(2)O, was prepared as a potential anti-cancer agent. Its structure is ionic and consists of a square-planar [PdCl(2)(CQ)](-) complex anion (CQ is 5-chloro-7-iodo-quinolin-8-olate), with the Pd(II) atom surrounded by two chloride ligands in a cis configuration and one N,O-bidentate CQ mol-ecule, a protonated anion of CQ as counter-cation and two non-coordinated water mol-ecules. The water mol-ecules are involved in O-H⋯O and N-H⋯O hydrogen bonds, which inter-connect the HCQ(+) cations into a chain parallel to [010]. Apart from these inter-actions, the structure is also stabilized by face-to-face π-π inter-actions [centroid-centroid = 3.546 (3) Å], which occur between the phenolic parts of the complex anions and cations.

Entities:  

Year:  2011        PMID: 22219759      PMCID: PMC3246939          DOI: 10.1107/S1600536811040803

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to square-planar complexes of platinum and palladium as potential chemotherapeutics, see: Bielawska et al. (2010 ▶); Bruijnincx & Sadler (2008 ▶); Ding et al. (2005 ▶); Garoufis et al. (2009 ▶). For structures of CQ complexes, see: Di Vaira et al. (2004 ▶) for [Cu(CQ)2] and [Zn(CQ)2(H2O)]·H2O·THF; Miyashita et al. (2005 ▶) for [ReCl2(CQ)O(PPh3)]. The structure of [Pd(8-HQ)2] (8-HQ = 8-hy­droxy­quinoline) was previously described by Prout & Wheeler (1966 ▶). For other related structures, see: Cui et al. (2009 ▶); Guney et al. (2011 ▶); Screnci & McKeage (1999 ▶); Yue et al. (2008 ▶); Kapteijn et al. (1996 ▶); Fazeli et al. (2009 ▶); Gniewek et al. (2006 ▶). Structures of complexes containing other halogen-derivatives of 8-HQ may also be found in the Cambridge Structural Database, see: Allen (2002 ▶). For π–π inter­actions, see: Janiak (2000 ▶).

Experimental

Crystal data

(C9H6ClINO)[PdCl2(C9H4ClINO)]·2H2O M = 824.31 Monoclinic, a = 34.3212 (10) Å b = 7.7028 (2) Å c = 18.4128 (5) Å β = 104.455 (3)° V = 4713.7 (2) Å3 Z = 8 Mo Kα radiation μ = 3.89 mm−1 T = 293 K 0.44 × 0.14 × 0.07 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.555, T max = 1.000 24287 measured reflections 4641 independent reflections 3888 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.080 S = 1.14 4641 reflections 287 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.61 e Å−3 Δρmin = −0.87 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and CALC-OH (Nardelli, 1999 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811040803/ff2030sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811040803/ff2030Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C9H6ClINO)[PdCl2(C9H4ClINO)]·2H2OF(000) = 3104
Mr = 824.31Dx = 2.323 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 14809 reflections
a = 34.3212 (10) Åθ = 3.0–29.6°
b = 7.7028 (2) ŵ = 3.89 mm1
c = 18.4128 (5) ÅT = 293 K
β = 104.455 (3)°Needle, orange-red
V = 4713.7 (2) Å30.44 × 0.14 × 0.07 mm
Z = 8
Oxford Diffraction Xcalibur Sapphire2 diffractometer4641 independent reflections
Radiation source: fine-focus sealed tube3888 reflections with I > 2σ(I)
graphiteRint = 0.049
Detector resolution: 8.3438 pixels mm-1θmax = 26.0°, θmin = 3.0°
ω scansh = −42→42
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2007)k = −9→9
Tmin = 0.555, Tmax = 1.000l = −22→22
24287 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H atoms treated by a mixture of independent and constrained refinement
S = 1.14w = 1/[σ2(Fo2) + (0.0265P)2 + 28.2625P] where P = (Fo2 + 2Fc2)/3
4641 reflections(Δ/σ)max = 0.002
287 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.87 e Å3
Experimental. CrysAlis RED, Oxford Diffraction (2007), Analytical numeric absorption correction using a multifaceted crystal model.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
I10.699063 (11)0.67835 (5)0.58026 (2)0.04530 (12)
Pd10.627824 (11)0.95775 (5)0.77655 (2)0.02970 (11)
Cl10.59303 (5)1.0787 (2)0.85369 (8)0.0471 (4)
Cl20.68728 (4)1.0204 (2)0.86375 (8)0.0483 (4)
I20.611094 (11)0.16194 (5)0.507511 (19)0.03868 (11)
Cl30.53299 (5)0.6203 (2)0.43378 (8)0.0515 (4)
Cl40.54308 (4)0.4700 (3)0.72671 (9)0.0574 (4)
O10.65529 (10)0.8421 (5)0.70322 (19)0.0343 (8)
O20.69038 (11)0.2391 (6)0.6466 (2)0.0469 (10)
H20.68540.19250.60520.070*
N10.57824 (12)0.9057 (6)0.6950 (2)0.0329 (10)
C130.60872 (16)0.6631 (7)0.5168 (3)0.0345 (12)
H30.61610.60980.47690.041*
N20.69550 (14)0.4180 (6)0.7764 (3)0.0373 (11)
H2N0.7156 (18)0.398 (8)0.761 (3)0.045*
C120.63853 (15)0.7155 (6)0.5801 (3)0.0288 (10)
C140.56918 (16)0.6898 (7)0.5132 (3)0.0346 (12)
C110.62914 (14)0.7916 (6)0.6417 (3)0.0274 (10)
C280.70063 (18)0.4935 (8)0.8424 (3)0.0459 (15)
H280.72650.51330.87190.055*
C290.65883 (15)0.3807 (7)0.7305 (3)0.0310 (11)
C190.58701 (14)0.8219 (6)0.6352 (3)0.0279 (10)
C250.62410 (15)0.4374 (7)0.7528 (3)0.0315 (11)
C230.58380 (15)0.3332 (7)0.6341 (3)0.0331 (11)
H230.55870.31980.60080.040*
C180.54040 (16)0.9481 (8)0.6920 (3)0.0441 (14)
H80.53461.00810.73190.053*
C220.61854 (15)0.2761 (6)0.6136 (3)0.0302 (11)
C240.58658 (15)0.4075 (7)0.7019 (3)0.0337 (11)
C210.65593 (15)0.2950 (7)0.6611 (3)0.0304 (11)
C160.51643 (16)0.8190 (8)0.5717 (3)0.0418 (13)
H60.49530.78890.53110.050*
C150.55647 (15)0.7739 (7)0.5712 (3)0.0328 (11)
C270.66770 (19)0.5433 (8)0.8681 (3)0.0451 (14)
H270.67130.59410.91510.054*
C260.62989 (17)0.5169 (7)0.8236 (3)0.0388 (13)
H260.60770.55190.84030.047*
C170.50877 (17)0.9044 (9)0.6298 (3)0.0538 (16)
H70.48250.93490.62920.065*
O4A0.7649 (2)0.3424 (13)0.7353 (5)0.0556 (18)0.50
H1O40.74440.33210.69860.083*0.50
H2O40.78190.26580.73030.083*0.50
O4B0.7706 (2)0.4711 (14)0.7626 (5)0.0556 (18)0.50
O30.72251 (16)0.1567 (7)0.5263 (3)0.0780 (16)
H2O30.70470.07890.51290.117*
H1O30.71250.24740.50280.117*
U11U22U33U12U13U23
I10.0356 (2)0.0526 (2)0.0522 (2)0.00153 (17)0.01937 (17)−0.00573 (18)
Pd10.0312 (2)0.0324 (2)0.02578 (18)−0.00258 (17)0.00749 (15)0.00048 (16)
Cl10.0538 (9)0.0550 (9)0.0381 (7)0.0005 (7)0.0218 (7)−0.0047 (6)
Cl20.0436 (8)0.0610 (9)0.0350 (7)−0.0094 (7)−0.0002 (6)−0.0030 (7)
I20.0445 (2)0.0382 (2)0.03188 (18)−0.00183 (16)0.00673 (15)0.00035 (15)
Cl30.0471 (9)0.0655 (10)0.0352 (7)−0.0147 (7)−0.0020 (6)−0.0088 (7)
Cl40.0315 (7)0.0886 (12)0.0561 (9)0.0108 (8)0.0184 (7)0.0014 (9)
O10.0263 (18)0.045 (2)0.0298 (18)−0.0024 (16)0.0042 (15)−0.0069 (16)
O20.036 (2)0.066 (3)0.041 (2)0.012 (2)0.0132 (18)0.006 (2)
N10.028 (2)0.039 (2)0.032 (2)−0.0007 (19)0.0082 (18)0.0029 (19)
C130.045 (3)0.033 (3)0.026 (2)−0.003 (2)0.010 (2)0.001 (2)
N20.028 (2)0.044 (3)0.036 (2)−0.004 (2)−0.0001 (19)0.008 (2)
C120.028 (3)0.027 (3)0.034 (2)0.002 (2)0.011 (2)0.001 (2)
C140.039 (3)0.034 (3)0.026 (2)−0.006 (2)0.000 (2)0.001 (2)
C110.028 (3)0.028 (3)0.025 (2)−0.001 (2)0.003 (2)0.006 (2)
C280.043 (3)0.044 (3)0.040 (3)−0.012 (3)−0.011 (3)0.006 (3)
C290.027 (3)0.033 (3)0.031 (3)−0.006 (2)0.001 (2)0.007 (2)
C190.028 (3)0.028 (3)0.028 (2)−0.003 (2)0.008 (2)−0.001 (2)
C250.035 (3)0.029 (3)0.030 (2)−0.002 (2)0.008 (2)0.007 (2)
C230.026 (3)0.036 (3)0.034 (3)−0.003 (2)0.003 (2)0.002 (2)
C180.033 (3)0.058 (4)0.044 (3)0.004 (3)0.015 (3)−0.006 (3)
C220.034 (3)0.030 (3)0.026 (2)−0.002 (2)0.005 (2)0.002 (2)
C240.024 (2)0.040 (3)0.039 (3)−0.002 (2)0.013 (2)0.007 (2)
C210.028 (3)0.035 (3)0.030 (2)−0.001 (2)0.010 (2)0.005 (2)
C160.028 (3)0.054 (4)0.039 (3)−0.003 (3)0.000 (2)0.001 (3)
C150.030 (3)0.036 (3)0.031 (3)−0.003 (2)0.005 (2)0.007 (2)
C270.059 (4)0.045 (3)0.028 (3)0.000 (3)0.005 (3)−0.004 (2)
C260.044 (3)0.042 (3)0.032 (3)0.000 (3)0.013 (2)0.005 (2)
C170.027 (3)0.079 (5)0.054 (4)0.001 (3)0.008 (3)−0.004 (3)
O4A0.030 (3)0.082 (6)0.055 (4)0.009 (4)0.010 (3)0.010 (4)
O4B0.030 (3)0.082 (6)0.055 (4)0.009 (4)0.010 (3)0.010 (4)
O30.083 (4)0.075 (4)0.063 (3)−0.007 (3)−0.007 (3)−0.007 (3)
I1—C122.096 (5)C28—H280.9300
Pd1—N12.009 (4)C29—C211.420 (7)
Pd1—O12.035 (3)C29—C251.423 (7)
Pd1—Cl12.2711 (14)C19—C151.416 (7)
Pd1—Cl22.3107 (14)C25—C261.409 (7)
I2—C222.099 (5)C25—C241.410 (7)
Cl3—C141.749 (5)C23—C241.354 (7)
Cl4—C241.735 (5)C23—C221.408 (7)
O1—C111.316 (6)C23—H230.9300
O2—C211.347 (6)C18—C171.407 (8)
O2—H20.8200C18—H80.9300
N1—C181.327 (7)C22—C211.369 (7)
N1—C191.373 (6)C16—C171.338 (8)
C13—C141.358 (8)C16—C151.419 (7)
C13—C121.405 (7)C16—H60.9300
C13—H30.9300C27—C261.366 (8)
N2—C281.319 (7)C27—H270.9300
N2—C291.360 (6)C26—H260.9300
N2—H2N0.82 (6)C17—H70.9300
C12—C111.385 (7)O4A—H1O40.8502
C14—C151.409 (7)O4A—H2O40.8499
C11—C191.440 (7)O3—H2O30.8488
C28—C271.384 (9)O3—H1O30.8483
N1—Pd1—O182.12 (15)C26—C25—C24125.5 (5)
N1—Pd1—Cl194.01 (12)C26—C25—C29117.7 (5)
O1—Pd1—Cl1175.98 (10)C24—C25—C29116.7 (5)
N1—Pd1—Cl2175.90 (12)C24—C23—C22120.6 (5)
O1—Pd1—Cl294.44 (10)C24—C23—H23119.7
Cl1—Pd1—Cl289.47 (6)C22—C23—H23119.7
C11—O1—Pd1111.8 (3)N1—C18—C17121.5 (5)
C21—O2—H2109.5N1—C18—H8119.2
C18—N1—C19119.4 (4)C17—C18—H8119.2
C18—N1—Pd1128.3 (4)C21—C22—C23121.1 (5)
C19—N1—Pd1112.3 (3)C21—C22—I2121.1 (4)
C14—C13—C12120.6 (5)C23—C22—I2117.8 (4)
C14—C13—H3119.7C23—C24—C25121.6 (5)
C12—C13—H3119.7C23—C24—Cl4119.5 (4)
C28—N2—C29123.7 (5)C25—C24—Cl4118.8 (4)
C28—N2—H2N118 (4)O2—C21—C22124.6 (5)
C29—N2—H2N118 (4)O2—C21—C29117.4 (4)
C11—C12—C13122.1 (5)C22—C21—C29118.0 (5)
C11—C12—I1119.3 (4)C17—C16—C15120.6 (5)
C13—C12—I1118.6 (4)C17—C16—H6119.7
C13—C14—C15121.8 (5)C15—C16—H6119.7
C13—C14—Cl3119.1 (4)C14—C15—C19116.5 (5)
C15—C14—Cl3119.0 (4)C14—C15—C16126.9 (5)
O1—C11—C12125.6 (4)C19—C15—C16116.6 (5)
O1—C11—C19118.6 (4)C26—C27—C28119.3 (5)
C12—C11—C19115.7 (4)C26—C27—H27120.4
N2—C28—C27120.3 (5)C28—C27—H27120.4
N2—C28—H28119.9C27—C26—C25120.9 (5)
C27—C28—H28119.9C27—C26—H26119.6
N2—C29—C21120.2 (5)C25—C26—H26119.6
N2—C29—C25117.9 (5)C16—C17—C18120.2 (5)
C21—C29—C25121.8 (4)C16—C17—H7119.9
N1—C19—C15121.7 (4)C18—C17—H7119.9
N1—C19—C11115.2 (4)H1O4—O4A—H2O4107.7
C15—C19—C11123.1 (4)H2O3—O3—H1O3105.2
D—H···AD—HH···AD···AD—H···A
O2—H2···O30.822.182.782 (7)131.
N2—H2N···O4A0.82 (6)1.92 (6)2.737 (10)174 (6)
N2—H2N···O4B0.82 (6)1.96 (6)2.683 (9)146 (6)
O4A—H1O4···O20.852.002.787 (10)155.
C28—H28···O3i0.932.483.347 (8)155.
Pd1—N12.009 (4)
Pd1—O12.035 (3)
Pd1—Cl12.2711 (14)
Pd1—Cl22.3107 (14)
N1—Pd1—O182.12 (15)
N1—Pd1—Cl194.01 (12)
O1—Pd1—Cl1175.98 (10)
N1—Pd1—Cl2175.90 (12)
O1—Pd1—Cl294.44 (10)
Cl1—Pd1—Cl289.47 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O30.822.182.782 (7)131
N2—H2N⋯O4A0.82 (6)1.92 (6)2.737 (10)174 (6)
N2—H2N⋯O4B0.82 (6)1.96 (6)2.683 (9)146 (6)
O4A—H1O4⋯O20.852.002.787 (10)155
C28—H28⋯O3i0.932.483.347 (8)155

Symmetry code: (i) .

  9 in total

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Review 5.  Platinum neurotoxicity: clinical profiles, experimental models and neuroprotective approaches.

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Authors:  Wei-Qun Ding; Bolin Liu; Joshua L Vaught; Hanako Yamauchi; Stuart E Lind
Journal:  Cancer Res       Date:  2005-04-15       Impact factor: 12.701

7.  Clioquinol, a drug for Alzheimer's disease specifically interfering with brain metal metabolism: structural characterization of its zinc(II) and copper(II) complexes.

Authors:  Massimo Di Vaira; Carla Bazzicalupi; Pierluigi Orioli; Luigi Messori; Bruno Bruni; Paolo Zatta
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8.  Dichloridobis(5,7-dichloro-quinolin-8-olato-κN,O)tin(IV).

Authors:  Yousef Fazaeli; Ezzatollah Najafi; Mostafa M Amini; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-13

Review 9.  New trends for metal complexes with anticancer activity.

Authors:  Pieter C A Bruijnincx; Peter J Sadler
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