| Literature DB >> 22219759 |
Abstract
The title Pd(II) coordination compound, (C(9)H(6)ClINO)[PdCl(2)(C(9)H(4)ClINO)]·2H(2)O, was prepared as a potential anti-cancer agent. Its structure is ionic and consists of a square-planar [PdCl(2)(CQ)](-) complex anion (CQ is 5-chloro-7-iodo-quinolin-8-olate), with the Pd(II) atom surrounded by two chloride ligands in a cis configuration and one N,O-bidentate CQ mol-ecule, a protonated anion of CQ as counter-cation and two non-coordinated water mol-ecules. The water mol-ecules are involved in O-H⋯O and N-H⋯O hydrogen bonds, which inter-connect the HCQ(+) cations into a chain parallel to [010]. Apart from these inter-actions, the structure is also stabilized by face-to-face π-π inter-actions [centroid-centroid = 3.546 (3) Å], which occur between the phenolic parts of the complex anions and cations.Entities:
Year: 2011 PMID: 22219759 PMCID: PMC3246939 DOI: 10.1107/S1600536811040803
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C9H6ClINO)[PdCl2(C9H4ClINO)]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 14809 reflections |
| θ = 3.0–29.6° | |
| µ = 3.89 mm−1 | |
| β = 104.455 (3)° | Needle, orange-red |
| 0.44 × 0.14 × 0.07 mm | |
| Oxford Diffraction Xcalibur Sapphire2 diffractometer | 4641 independent reflections |
| Radiation source: fine-focus sealed tube | 3888 reflections with |
| graphite | |
| Detector resolution: 8.3438 pixels mm-1 | θmax = 26.0°, θmin = 3.0° |
| ω scans | |
| Absorption correction: analytical ( | |
| 24287 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4641 reflections | (Δ/σ)max = 0.002 |
| 287 parameters | Δρmax = 0.61 e Å−3 |
| 0 restraints | Δρmin = −0.87 e Å−3 |
| Experimental. CrysAlis RED, Oxford Diffraction (2007), Analytical numeric absorption correction using a multifaceted crystal model. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| I1 | 0.699063 (11) | 0.67835 (5) | 0.58026 (2) | 0.04530 (12) | |
| Pd1 | 0.627824 (11) | 0.95775 (5) | 0.77655 (2) | 0.02970 (11) | |
| Cl1 | 0.59303 (5) | 1.0787 (2) | 0.85369 (8) | 0.0471 (4) | |
| Cl2 | 0.68728 (4) | 1.0204 (2) | 0.86375 (8) | 0.0483 (4) | |
| I2 | 0.611094 (11) | 0.16194 (5) | 0.507511 (19) | 0.03868 (11) | |
| Cl3 | 0.53299 (5) | 0.6203 (2) | 0.43378 (8) | 0.0515 (4) | |
| Cl4 | 0.54308 (4) | 0.4700 (3) | 0.72671 (9) | 0.0574 (4) | |
| O1 | 0.65529 (10) | 0.8421 (5) | 0.70322 (19) | 0.0343 (8) | |
| O2 | 0.69038 (11) | 0.2391 (6) | 0.6466 (2) | 0.0469 (10) | |
| H2 | 0.6854 | 0.1925 | 0.6052 | 0.070* | |
| N1 | 0.57824 (12) | 0.9057 (6) | 0.6950 (2) | 0.0329 (10) | |
| C13 | 0.60872 (16) | 0.6631 (7) | 0.5168 (3) | 0.0345 (12) | |
| H3 | 0.6161 | 0.6098 | 0.4769 | 0.041* | |
| N2 | 0.69550 (14) | 0.4180 (6) | 0.7764 (3) | 0.0373 (11) | |
| H2N | 0.7156 (18) | 0.398 (8) | 0.761 (3) | 0.045* | |
| C12 | 0.63853 (15) | 0.7155 (6) | 0.5801 (3) | 0.0288 (10) | |
| C14 | 0.56918 (16) | 0.6898 (7) | 0.5132 (3) | 0.0346 (12) | |
| C11 | 0.62914 (14) | 0.7916 (6) | 0.6417 (3) | 0.0274 (10) | |
| C28 | 0.70063 (18) | 0.4935 (8) | 0.8424 (3) | 0.0459 (15) | |
| H28 | 0.7265 | 0.5133 | 0.8719 | 0.055* | |
| C29 | 0.65883 (15) | 0.3807 (7) | 0.7305 (3) | 0.0310 (11) | |
| C19 | 0.58701 (14) | 0.8219 (6) | 0.6352 (3) | 0.0279 (10) | |
| C25 | 0.62410 (15) | 0.4374 (7) | 0.7528 (3) | 0.0315 (11) | |
| C23 | 0.58380 (15) | 0.3332 (7) | 0.6341 (3) | 0.0331 (11) | |
| H23 | 0.5587 | 0.3198 | 0.6008 | 0.040* | |
| C18 | 0.54040 (16) | 0.9481 (8) | 0.6920 (3) | 0.0441 (14) | |
| H8 | 0.5346 | 1.0081 | 0.7319 | 0.053* | |
| C22 | 0.61854 (15) | 0.2761 (6) | 0.6136 (3) | 0.0302 (11) | |
| C24 | 0.58658 (15) | 0.4075 (7) | 0.7019 (3) | 0.0337 (11) | |
| C21 | 0.65593 (15) | 0.2950 (7) | 0.6611 (3) | 0.0304 (11) | |
| C16 | 0.51643 (16) | 0.8190 (8) | 0.5717 (3) | 0.0418 (13) | |
| H6 | 0.4953 | 0.7889 | 0.5311 | 0.050* | |
| C15 | 0.55647 (15) | 0.7739 (7) | 0.5712 (3) | 0.0328 (11) | |
| C27 | 0.66770 (19) | 0.5433 (8) | 0.8681 (3) | 0.0451 (14) | |
| H27 | 0.6713 | 0.5941 | 0.9151 | 0.054* | |
| C26 | 0.62989 (17) | 0.5169 (7) | 0.8236 (3) | 0.0388 (13) | |
| H26 | 0.6077 | 0.5519 | 0.8403 | 0.047* | |
| C17 | 0.50877 (17) | 0.9044 (9) | 0.6298 (3) | 0.0538 (16) | |
| H7 | 0.4825 | 0.9349 | 0.6292 | 0.065* | |
| O4A | 0.7649 (2) | 0.3424 (13) | 0.7353 (5) | 0.0556 (18) | 0.50 |
| H1O4 | 0.7444 | 0.3321 | 0.6986 | 0.083* | 0.50 |
| H2O4 | 0.7819 | 0.2658 | 0.7303 | 0.083* | 0.50 |
| O4B | 0.7706 (2) | 0.4711 (14) | 0.7626 (5) | 0.0556 (18) | 0.50 |
| O3 | 0.72251 (16) | 0.1567 (7) | 0.5263 (3) | 0.0780 (16) | |
| H2O3 | 0.7047 | 0.0789 | 0.5129 | 0.117* | |
| H1O3 | 0.7125 | 0.2474 | 0.5028 | 0.117* |
| I1 | 0.0356 (2) | 0.0526 (2) | 0.0522 (2) | 0.00153 (17) | 0.01937 (17) | −0.00573 (18) |
| Pd1 | 0.0312 (2) | 0.0324 (2) | 0.02578 (18) | −0.00258 (17) | 0.00749 (15) | 0.00048 (16) |
| Cl1 | 0.0538 (9) | 0.0550 (9) | 0.0381 (7) | 0.0005 (7) | 0.0218 (7) | −0.0047 (6) |
| Cl2 | 0.0436 (8) | 0.0610 (9) | 0.0350 (7) | −0.0094 (7) | −0.0002 (6) | −0.0030 (7) |
| I2 | 0.0445 (2) | 0.0382 (2) | 0.03188 (18) | −0.00183 (16) | 0.00673 (15) | 0.00035 (15) |
| Cl3 | 0.0471 (9) | 0.0655 (10) | 0.0352 (7) | −0.0147 (7) | −0.0020 (6) | −0.0088 (7) |
| Cl4 | 0.0315 (7) | 0.0886 (12) | 0.0561 (9) | 0.0108 (8) | 0.0184 (7) | 0.0014 (9) |
| O1 | 0.0263 (18) | 0.045 (2) | 0.0298 (18) | −0.0024 (16) | 0.0042 (15) | −0.0069 (16) |
| O2 | 0.036 (2) | 0.066 (3) | 0.041 (2) | 0.012 (2) | 0.0132 (18) | 0.006 (2) |
| N1 | 0.028 (2) | 0.039 (2) | 0.032 (2) | −0.0007 (19) | 0.0082 (18) | 0.0029 (19) |
| C13 | 0.045 (3) | 0.033 (3) | 0.026 (2) | −0.003 (2) | 0.010 (2) | 0.001 (2) |
| N2 | 0.028 (2) | 0.044 (3) | 0.036 (2) | −0.004 (2) | −0.0001 (19) | 0.008 (2) |
| C12 | 0.028 (3) | 0.027 (3) | 0.034 (2) | 0.002 (2) | 0.011 (2) | 0.001 (2) |
| C14 | 0.039 (3) | 0.034 (3) | 0.026 (2) | −0.006 (2) | 0.000 (2) | 0.001 (2) |
| C11 | 0.028 (3) | 0.028 (3) | 0.025 (2) | −0.001 (2) | 0.003 (2) | 0.006 (2) |
| C28 | 0.043 (3) | 0.044 (3) | 0.040 (3) | −0.012 (3) | −0.011 (3) | 0.006 (3) |
| C29 | 0.027 (3) | 0.033 (3) | 0.031 (3) | −0.006 (2) | 0.001 (2) | 0.007 (2) |
| C19 | 0.028 (3) | 0.028 (3) | 0.028 (2) | −0.003 (2) | 0.008 (2) | −0.001 (2) |
| C25 | 0.035 (3) | 0.029 (3) | 0.030 (2) | −0.002 (2) | 0.008 (2) | 0.007 (2) |
| C23 | 0.026 (3) | 0.036 (3) | 0.034 (3) | −0.003 (2) | 0.003 (2) | 0.002 (2) |
| C18 | 0.033 (3) | 0.058 (4) | 0.044 (3) | 0.004 (3) | 0.015 (3) | −0.006 (3) |
| C22 | 0.034 (3) | 0.030 (3) | 0.026 (2) | −0.002 (2) | 0.005 (2) | 0.002 (2) |
| C24 | 0.024 (2) | 0.040 (3) | 0.039 (3) | −0.002 (2) | 0.013 (2) | 0.007 (2) |
| C21 | 0.028 (3) | 0.035 (3) | 0.030 (2) | −0.001 (2) | 0.010 (2) | 0.005 (2) |
| C16 | 0.028 (3) | 0.054 (4) | 0.039 (3) | −0.003 (3) | 0.000 (2) | 0.001 (3) |
| C15 | 0.030 (3) | 0.036 (3) | 0.031 (3) | −0.003 (2) | 0.005 (2) | 0.007 (2) |
| C27 | 0.059 (4) | 0.045 (3) | 0.028 (3) | 0.000 (3) | 0.005 (3) | −0.004 (2) |
| C26 | 0.044 (3) | 0.042 (3) | 0.032 (3) | 0.000 (3) | 0.013 (2) | 0.005 (2) |
| C17 | 0.027 (3) | 0.079 (5) | 0.054 (4) | 0.001 (3) | 0.008 (3) | −0.004 (3) |
| O4A | 0.030 (3) | 0.082 (6) | 0.055 (4) | 0.009 (4) | 0.010 (3) | 0.010 (4) |
| O4B | 0.030 (3) | 0.082 (6) | 0.055 (4) | 0.009 (4) | 0.010 (3) | 0.010 (4) |
| O3 | 0.083 (4) | 0.075 (4) | 0.063 (3) | −0.007 (3) | −0.007 (3) | −0.007 (3) |
| I1—C12 | 2.096 (5) | C28—H28 | 0.9300 |
| Pd1—N1 | 2.009 (4) | C29—C21 | 1.420 (7) |
| Pd1—O1 | 2.035 (3) | C29—C25 | 1.423 (7) |
| Pd1—Cl1 | 2.2711 (14) | C19—C15 | 1.416 (7) |
| Pd1—Cl2 | 2.3107 (14) | C25—C26 | 1.409 (7) |
| I2—C22 | 2.099 (5) | C25—C24 | 1.410 (7) |
| Cl3—C14 | 1.749 (5) | C23—C24 | 1.354 (7) |
| Cl4—C24 | 1.735 (5) | C23—C22 | 1.408 (7) |
| O1—C11 | 1.316 (6) | C23—H23 | 0.9300 |
| O2—C21 | 1.347 (6) | C18—C17 | 1.407 (8) |
| O2—H2 | 0.8200 | C18—H8 | 0.9300 |
| N1—C18 | 1.327 (7) | C22—C21 | 1.369 (7) |
| N1—C19 | 1.373 (6) | C16—C17 | 1.338 (8) |
| C13—C14 | 1.358 (8) | C16—C15 | 1.419 (7) |
| C13—C12 | 1.405 (7) | C16—H6 | 0.9300 |
| C13—H3 | 0.9300 | C27—C26 | 1.366 (8) |
| N2—C28 | 1.319 (7) | C27—H27 | 0.9300 |
| N2—C29 | 1.360 (6) | C26—H26 | 0.9300 |
| N2—H2N | 0.82 (6) | C17—H7 | 0.9300 |
| C12—C11 | 1.385 (7) | O4A—H1O4 | 0.8502 |
| C14—C15 | 1.409 (7) | O4A—H2O4 | 0.8499 |
| C11—C19 | 1.440 (7) | O3—H2O3 | 0.8488 |
| C28—C27 | 1.384 (9) | O3—H1O3 | 0.8483 |
| N1—Pd1—O1 | 82.12 (15) | C26—C25—C24 | 125.5 (5) |
| N1—Pd1—Cl1 | 94.01 (12) | C26—C25—C29 | 117.7 (5) |
| O1—Pd1—Cl1 | 175.98 (10) | C24—C25—C29 | 116.7 (5) |
| N1—Pd1—Cl2 | 175.90 (12) | C24—C23—C22 | 120.6 (5) |
| O1—Pd1—Cl2 | 94.44 (10) | C24—C23—H23 | 119.7 |
| Cl1—Pd1—Cl2 | 89.47 (6) | C22—C23—H23 | 119.7 |
| C11—O1—Pd1 | 111.8 (3) | N1—C18—C17 | 121.5 (5) |
| C21—O2—H2 | 109.5 | N1—C18—H8 | 119.2 |
| C18—N1—C19 | 119.4 (4) | C17—C18—H8 | 119.2 |
| C18—N1—Pd1 | 128.3 (4) | C21—C22—C23 | 121.1 (5) |
| C19—N1—Pd1 | 112.3 (3) | C21—C22—I2 | 121.1 (4) |
| C14—C13—C12 | 120.6 (5) | C23—C22—I2 | 117.8 (4) |
| C14—C13—H3 | 119.7 | C23—C24—C25 | 121.6 (5) |
| C12—C13—H3 | 119.7 | C23—C24—Cl4 | 119.5 (4) |
| C28—N2—C29 | 123.7 (5) | C25—C24—Cl4 | 118.8 (4) |
| C28—N2—H2N | 118 (4) | O2—C21—C22 | 124.6 (5) |
| C29—N2—H2N | 118 (4) | O2—C21—C29 | 117.4 (4) |
| C11—C12—C13 | 122.1 (5) | C22—C21—C29 | 118.0 (5) |
| C11—C12—I1 | 119.3 (4) | C17—C16—C15 | 120.6 (5) |
| C13—C12—I1 | 118.6 (4) | C17—C16—H6 | 119.7 |
| C13—C14—C15 | 121.8 (5) | C15—C16—H6 | 119.7 |
| C13—C14—Cl3 | 119.1 (4) | C14—C15—C19 | 116.5 (5) |
| C15—C14—Cl3 | 119.0 (4) | C14—C15—C16 | 126.9 (5) |
| O1—C11—C12 | 125.6 (4) | C19—C15—C16 | 116.6 (5) |
| O1—C11—C19 | 118.6 (4) | C26—C27—C28 | 119.3 (5) |
| C12—C11—C19 | 115.7 (4) | C26—C27—H27 | 120.4 |
| N2—C28—C27 | 120.3 (5) | C28—C27—H27 | 120.4 |
| N2—C28—H28 | 119.9 | C27—C26—C25 | 120.9 (5) |
| C27—C28—H28 | 119.9 | C27—C26—H26 | 119.6 |
| N2—C29—C21 | 120.2 (5) | C25—C26—H26 | 119.6 |
| N2—C29—C25 | 117.9 (5) | C16—C17—C18 | 120.2 (5) |
| C21—C29—C25 | 121.8 (4) | C16—C17—H7 | 119.9 |
| N1—C19—C15 | 121.7 (4) | C18—C17—H7 | 119.9 |
| N1—C19—C11 | 115.2 (4) | H1O4—O4A—H2O4 | 107.7 |
| C15—C19—C11 | 123.1 (4) | H2O3—O3—H1O3 | 105.2 |
| H··· | ||||
| O2—H2···O3 | 0.82 | 2.18 | 2.782 (7) | 131. |
| N2—H2N···O4A | 0.82 (6) | 1.92 (6) | 2.737 (10) | 174 (6) |
| N2—H2N···O4B | 0.82 (6) | 1.96 (6) | 2.683 (9) | 146 (6) |
| O4A—H1O4···O2 | 0.85 | 2.00 | 2.787 (10) | 155. |
| C28—H28···O3i | 0.93 | 2.48 | 3.347 (8) | 155. |
| Pd1—N1 | 2.009 (4) |
| Pd1—O1 | 2.035 (3) |
| Pd1—Cl1 | 2.2711 (14) |
| Pd1—Cl2 | 2.3107 (14) |
| N1—Pd1—O1 | 82.12 (15) |
| N1—Pd1—Cl1 | 94.01 (12) |
| O1—Pd1—Cl1 | 175.98 (10) |
| N1—Pd1—Cl2 | 175.90 (12) |
| O1—Pd1—Cl2 | 94.44 (10) |
| Cl1—Pd1—Cl2 | 89.47 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H2⋯O3 | 0.82 | 2.18 | 2.782 (7) | 131 |
| N2—H2 | 0.82 (6) | 1.92 (6) | 2.737 (10) | 174 (6) |
| N2—H2 | 0.82 (6) | 1.96 (6) | 2.683 (9) | 146 (6) |
| O4 | 0.85 | 2.00 | 2.787 (10) | 155 |
| C28—H28⋯O3i | 0.93 | 2.48 | 3.347 (8) | 155 |
Symmetry code: (i) .