Literature DB >> 22210337

G-quadruplexes and metal ions.

Nancy H Campbell1, Stephen Neidle.   

Abstract

Metal ions stabilize quadruplex nucleic acids by coordinating the O6 guanine atoms from G-quartets. These quartets form the basic motif of quadruplex structures. This article systematically surveys the available crystallographic data on native quadruplexes, their ligand complexes and (in one instance) a protein complex. Three categories of quadruplex are examined, tetramolecular, bimolecular, and intramolecular: all are formed by telomeric nucleic acid sequences from human or ciliate organisms.

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Year:  2012        PMID: 22210337     DOI: 10.1007/978-94-007-2172-2_4

Source DB:  PubMed          Journal:  Met Ions Life Sci        ISSN: 1559-0836


  19 in total

1.  Predicting Site-Binding Modes of Ions and Water to Nucleic Acids Using Molecular Solvation Theory.

Authors:  George M Giambaşu; David A Case; Darrin M York
Journal:  J Am Chem Soc       Date:  2019-01-29       Impact factor: 15.419

2.  Distinct differences in metal ion specificity of RNA and DNA G-quadruplexes.

Authors:  Helena Guiset Miserachs; Daniela Donghi; Richard Börner; Silke Johannsen; Roland K O Sigel
Journal:  J Biol Inorg Chem       Date:  2016-10-04       Impact factor: 3.358

3.  Exploiting σ-hole interaction to design small uncharged ligand molecules to stabilize G-quadruplex-DNA: a computational study.

Authors:  Mrinal Kanti Si; Anusuya Saha; Bishwajit Ganguly
Journal:  J Mol Model       Date:  2020-02-01       Impact factor: 1.810

4.  Binding of G-quadruplexes to the N-terminal recognition domain of the RNA helicase associated with AU-rich element (RHAU).

Authors:  Markus Meier; Trushar R Patel; Evan P Booy; Oksana Marushchak; Natalie Okun; Soumya Deo; Ryan Howard; Kevin McEleney; Stephen E Harding; Jörg Stetefeld; Sean A McKenna
Journal:  J Biol Chem       Date:  2013-10-22       Impact factor: 5.157

5.  Calculation of hydrodynamic properties for G-quadruplex nucleic acid structures from in silico bead models.

Authors:  Huy T Le; Robert Buscaglia; William L Dean; Jonathan B Chaires; John O Trent
Journal:  Top Curr Chem       Date:  2013

6.  Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label.

Authors:  Xiaojun Zhang; Cui-Xia Xu; Rosa Di Felice; Jiri Sponer; Barira Islam; Petr Stadlbauer; Yuan Ding; Lingling Mao; Zong-Wan Mao; Peter Z Qin
Journal:  Biochemistry       Date:  2015-12-31       Impact factor: 3.162

7.  Nucleolin stabilizes G-quadruplex structures folded by the LTR promoter and silences HIV-1 viral transcription.

Authors:  Elena Tosoni; Ilaria Frasson; Matteo Scalabrin; Rosalba Perrone; Elena Butovskaya; Matteo Nadai; Giorgio Palù; Dan Fabris; Sara N Richter
Journal:  Nucleic Acids Res       Date:  2015-09-09       Impact factor: 16.971

8.  Binding Studies of Aloe-Active Compounds with G-Quadruplex Sequences.

Authors:  Abhi Das; Sanjay Dutta
Journal:  ACS Omega       Date:  2021-07-09

9.  C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes.

Authors:  Pietro Fratta; Sarah Mizielinska; Andrew J Nicoll; Mire Zloh; Elizabeth M C Fisher; Gary Parkinson; Adrian M Isaacs
Journal:  Sci Rep       Date:  2012-12-21       Impact factor: 4.379

10.  Synthesis, Binding and Antiviral Properties of Potent Core-Extended Naphthalene Diimides Targeting the HIV-1 Long Terminal Repeat Promoter G-Quadruplexes.

Authors:  Rosalba Perrone; Filippo Doria; Elena Butovskaya; Ilaria Frasson; Silvia Botti; Matteo Scalabrin; Sara Lago; Vincenzo Grande; Matteo Nadai; Mauro Freccero; Sara N Richter
Journal:  J Med Chem       Date:  2015-12-08       Impact factor: 7.446

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