Literature DB >> 22210217

Time-dependent profiles of transcripts encoding lignocellulose-modifying enzymes of the white rot fungus Phanerochaete carnosa grown on multiple wood substrates.

Jacqueline Macdonald1, Emma R Master.   

Abstract

The abundances of nine transcripts predicted to encode lignocellulose-modifying enzymes were measured over the course of Phanerochaete carnosa cultivation on four wood species. Profiles were consistent with sequential decay; transcripts encoding lignin-degrading peroxidases featured a significant substrate-dependent response. The chitin synthase gene was identified as the optimal internal reference gene for transcript quantification.

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Year:  2011        PMID: 22210217      PMCID: PMC3294475          DOI: 10.1128/AEM.06511-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  12 in total

1.  Differential regulation and xenobiotic induction of tandem P450 monooxygenase genes pc-1 (CYP63A1) and pc-2 (CYP63A2) in the white-rot fungus Phanerochaete chrysosporium.

Authors:  Harshavardhan Doddapaneni; Jagjit S Yadav
Journal:  Appl Microbiol Biotechnol       Date:  2004-07-23       Impact factor: 4.813

2.  Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression.

Authors:  Amber Vanden Wymelenberg; Jill Gaskell; Mike Mozuch; Phil Kersten; Grzegorz Sabat; Diego Martinez; Dan Cullen
Journal:  Appl Environ Microbiol       Date:  2009-04-17       Impact factor: 4.792

3.  Phanerochaete chrysosporium cellobiohydrolase and cellobiose dehydrogenase transcripts in wood.

Authors:  M A Vallim; B J Janse; J Gaskell; A A Pizzirani-Kleiner; D Cullen
Journal:  Appl Environ Microbiol       Date:  1998-05       Impact factor: 4.792

4.  Mode of coniferous wood decay by the white rot fungus Phanerochaete carnosa as elucidated by FTIR and ToF-SIMS.

Authors:  Sonam Mahajan; Dragica Jeremic; Robyn E Goacher; Emma R Master
Journal:  Appl Microbiol Biotechnol       Date:  2012-06       Impact factor: 4.813

5.  Cellotriose and cellotetraose as inducers of the genes encoding cellobiohydrolases in the basidiomycete Phanerochaete chrysosporium.

Authors:  Hitoshi Suzuki; Kiyohiko Igarashi; Masahiro Samejima
Journal:  Appl Environ Microbiol       Date:  2010-07-23       Impact factor: 4.792

6.  Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.

Authors:  Amber Vanden Wymelenberg; Jill Gaskell; Michael Mozuch; Grzegorz Sabat; John Ralph; Oleksandr Skyba; Shawn D Mansfield; Robert A Blanchette; Diego Martinez; Igor Grigoriev; Philip J Kersten; Dan Cullen
Journal:  Appl Environ Microbiol       Date:  2010-04-16       Impact factor: 4.792

7.  Quantitative transcriptional analysis of the genes encoding glycoside hydrolase family 7 cellulase isozymes in the basidiomycete Phanerochaete chrysosporium.

Authors:  Hitoshi Suzuki; Kiyohiko Igarashi; Masahiro Samejima
Journal:  FEMS Microbiol Lett       Date:  2009-08-06       Impact factor: 2.742

8.  Expression of lip genes during growth in soil and oxidation of anthracene by Phanerochaete chrysosporium.

Authors:  B W Bogan; B Schoenike; R T Lamar; D Cullen
Journal:  Appl Environ Microbiol       Date:  1996-10       Impact factor: 4.792

9.  Differential expression in Phanerochaete chrysosporium of membrane-associated proteins relevant to lignin degradation.

Authors:  Semarjit Shary; Alexander N Kapich; Ellen A Panisko; Jon K Magnuson; Daniel Cullen; Kenneth E Hammel
Journal:  Appl Environ Microbiol       Date:  2008-10-10       Impact factor: 4.792

10.  Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: evidence for gene duplications and extensive gene clustering.

Authors:  Harshavardhan Doddapaneni; Ranajit Chakraborty; Jagjit S Yadav
Journal:  BMC Genomics       Date:  2005-06-14       Impact factor: 3.969

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  11 in total

1.  Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola.

Authors:  Baojun Wu; Jill Gaskell; Benjamin W Held; Cristina Toapanta; Thu Vuong; Steven Ahrendt; Anna Lipzen; Jiwei Zhang; Jonathan S Schilling; Emma Master; Igor V Grigoriev; Robert A Blanchette; Dan Cullen; David S Hibbett
Journal:  Appl Environ Microbiol       Date:  2018-08-01       Impact factor: 4.792

2.  Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi.

Authors:  Baojun Wu; Jill Gaskell; Jiwei Zhang; Christina Toapanta; Steven Ahrendt; Igor V Grigoriev; Robert A Blanchette; Jonathan S Schilling; Emma Master; Daniel Cullen; David S Hibbett
Journal:  ISME J       Date:  2019-02-04       Impact factor: 10.302

3.  Deciphering lignocellulose deconstruction by the white rot fungus Irpex lacteus based on genomic and transcriptomic analyses.

Authors:  Xing Qin; Xiaoyun Su; Huiying Luo; Rui Ma; Bin Yao; Fuying Ma
Journal:  Biotechnol Biofuels       Date:  2018-03-02       Impact factor: 6.040

4.  Retracted and Republished from: "Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola"

Authors:  Baojun Wu; Jill Gaskell; Benjamin W Held; Cristina Toapanta; Thu V Vuong; Steven Ahrendt; Anna Lipzen; Jiwei Zhang; Jonathan S Schilling; Emma Master; Igor V Grigoriev; Robert A Blanchette; Dan Cullen; David S Hibbett
Journal:  Appl Environ Microbiol       Date:  2021-07-27       Impact factor: 4.792

5.  Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus.

Authors:  Marie Couturier; David Navarro; Didier Chevret; Bernard Henrissat; François Piumi; Francisco J Ruiz-Dueñas; Angel T Martinez; Igor V Grigoriev; Robert Riley; Anna Lipzen; Jean-Guy Berrin; Emma R Master; Marie-Noëlle Rosso
Journal:  Biotechnol Biofuels       Date:  2015-12-18       Impact factor: 6.040

6.  The integrative omics of white-rot fungus Pycnoporus coccineus reveals co-regulated CAZymes for orchestrated lignocellulose breakdown.

Authors:  Shingo Miyauchi; David Navarro; Sacha Grisel; Didier Chevret; Jean-Guy Berrin; Marie-Noelle Rosso
Journal:  PLoS One       Date:  2017-04-10       Impact factor: 3.240

7.  Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce.

Authors:  E Jurak; H Suzuki; G van Erven; J A Gandier; P Wong; K Chan; C Y Ho; Y Gong; E Tillier; M-N Rosso; M A Kabel; S Miyauchi; E R Master
Journal:  BMC Genomics       Date:  2018-11-13       Impact factor: 3.969

8.  Taxonomic evaluation of Xylodon (Hymenochaetales, Basidiomycota) in Korea and sequence verification of the corresponding species in GenBank.

Authors:  Yoonhee Cho; Ji Seon Kim; Yu-Cheng Dai; Yusufjon Gafforov; Young Woon Lim
Journal:  PeerJ       Date:  2021-12-10       Impact factor: 2.984

Review 9.  Enzymatic hydrolysis of biomass from wood.

Authors:  Consolación Álvarez; Francisco Manuel Reyes-Sosa; Bruno Díez
Journal:  Microb Biotechnol       Date:  2016-02-01       Impact factor: 5.813

Review 10.  Evolution of Fungal Carbohydrate-Active Enzyme Portfolios and Adaptation to Plant Cell-Wall Polymers.

Authors:  Hayat Hage; Marie-Noëlle Rosso
Journal:  J Fungi (Basel)       Date:  2021-03-05
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