Literature DB >> 22207904

Partial differential equation transform - Variational formulation and Fourier analysis.

Yang Wang, Guo-Wei Wei, Siyang Yang.   

Abstract

Nonlinear partial differential equation (PDE) models are established approaches for image/signal processing, data analysis and surface construction. Most previous geometric PDEs are utilized as low-pass filters which give rise to image trend information. In an earlier work, we introduced mode decomposition evolution equations (MoDEEs), which behave like high-pass filters and are able to systematically provide intrinsic mode functions (IMFs) of signals and images. Due to their tunable time-frequency localization and perfect reconstruction, the operation of MoDEEs is called a PDE transform. By appropriate selection of PDE transform parameters, we can tune IMFs into trends, edges, textures, noise etc., which can be further utilized in the secondary processing for various purposes. This work introduces the variational formulation, performs the Fourier analysis, and conducts biomedical and biological applications of the proposed PDE transform. The variational formulation offers an algorithm to incorporate two image functions and two sets of low-pass PDE operators in the total energy functional. Two low-pass PDE operators have different signs, leading to energy disparity, while a coupling term, acting as a relative fidelity of two image functions, is introduced to reduce the disparity of two energy components. We construct variational PDE transforms by using Euler-Lagrange equation and artificial time propagation. Fourier analysis of a simplified PDE transform is presented to shed light on the filter properties of high order PDE transforms. Such an analysis also offers insight on the parameter selection of the PDE transform. The proposed PDE transform algorithm is validated by numerous benchmark tests. In one selected challenging example, we illustrate the ability of PDE transform to separate two adjacent frequencies of sin(x) and sin(1.1x). Such an ability is due to PDE transform's controllable frequency localization obtained by adjusting the order of PDEs. The frequency selection is achieved either by diffusion coefficients or by propagation time. Finally, we explore a large number of practical applications to further demonstrate the utility of proposed PDE transform.

Entities:  

Year:  2011        PMID: 22207904      PMCID: PMC3246290          DOI: 10.1002/cnm.1452

Source DB:  PubMed          Journal:  Int J Numer Method Biomed Eng        ISSN: 2040-7939            Impact factor:   2.747


  20 in total

1.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

2.  Mode decomposition evolution equations.

Authors:  Yang Wang; Guo-Wei Wei; Siyang Yang
Journal:  J Sci Comput       Date:  2012-03-01       Impact factor: 2.592

3.  Application of the empirical mode decomposition to the analysis of esophageal manometric data in gastroesophageal reflux disease.

Authors:  Hualou Liang; Qiu-Hua Lin; J D Z Chen
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4.  Strong-continuation, contrast-invariant inpainting with a third-order optimal PDE.

Authors:  Marcelo Bertalmío
Journal:  IEEE Trans Image Process       Date:  2006-07       Impact factor: 10.856

5.  Noise removal using fourth-order partial differential equation with applications to medical magnetic resonance images in space and time.

Authors:  Marius Lysaker; Arvid Lundervold; Xue-Cheng Tai
Journal:  IEEE Trans Image Process       Date:  2003       Impact factor: 10.856

6.  Active contours without edges.

Authors:  T F Chan; L A Vese
Journal:  IEEE Trans Image Process       Date:  2001       Impact factor: 10.856

7.  An "optimal" spawning algorithm for adaptive basis set expansion in nonadiabatic dynamics.

Authors:  Sandy Yang; Joshua D Coe; Benjamin Kaduk; Todd J Martínez
Journal:  J Chem Phys       Date:  2009-04-07       Impact factor: 3.488

8.  Modeling and simulation of electronic structure, material interface and random doping in nano electronic devices.

Authors:  Duan Chen; Guo-Wei Wei
Journal:  J Comput Phys       Date:  2010-06-20       Impact factor: 3.553

9.  Differential geometry based solvation model I: Eulerian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Comput Phys       Date:  2010-11-01       Impact factor: 3.553

Review 10.  Functional imaging using the retinal function imager: direct imaging of blood velocity, achieving fluorescein angiography-like images without any contrast agent, qualitative oximetry, and functional metabolic signals.

Authors:  David Izhaky; Darin A Nelson; Zvia Burgansky-Eliash; Amiram Grinvald
Journal:  Jpn J Ophthalmol       Date:  2009-09-08       Impact factor: 2.447

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  12 in total

1.  Mode decomposition evolution equations.

Authors:  Yang Wang; Guo-Wei Wei; Siyang Yang
Journal:  J Sci Comput       Date:  2012-03-01       Impact factor: 2.592

2.  Multidimensional persistence in biomolecular data.

Authors:  Kelin Xia; Guo-Wei Wei
Journal:  J Comput Chem       Date:  2015-05-30       Impact factor: 3.376

3.  Hyperspectral chemical plume detection algorithms based on multidimensional iterative filtering decomposition.

Authors:  A Cicone; J Liu; H Zhou
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2016-04-13       Impact factor: 4.226

4.  Geometric algebra generation of molecular surfaces.

Authors:  Azzam Alfarraj; Guo-Wei Wei
Journal:  J R Soc Interface       Date:  2022-04-13       Impact factor: 4.118

5.  Multiscale geometric modeling of macromolecules I: Cartesian representation.

Authors:  Kelin Xia; Xin Feng; Zhan Chen; Yiying Tong; Guo Wei Wei
Journal:  J Comput Phys       Date:  2014-01       Impact factor: 3.553

6.  High-order fractional partial differential equation transform for molecular surface construction.

Authors:  Langhua Hu; Duan Chen; Guo-Wei Wei
Journal:  Mol Based Math Biol       Date:  2013-01-01

7.  Geometric modeling of subcellular structures, organelles, and multiprotein complexes.

Authors:  Xin Feng; Kelin Xia; Yiying Tong; Guo-Wei Wei
Journal:  Int J Numer Method Biomed Eng       Date:  2012-11-21       Impact factor: 2.747

8.  Object-oriented Persistent Homology.

Authors:  Bao Wang; Guo-Wei Wei
Journal:  J Comput Phys       Date:  2016-01-15       Impact factor: 3.553

9.  Biomolecular surface construction by PDE transform.

Authors:  Qiong Zheng; Siyang Yang; Guo-Wei Wei
Journal:  Int J Numer Method Biomed Eng       Date:  2011-09-26       Impact factor: 2.747

10.  Selective Extraction of Entangled Textures via Adaptive PDE Transform.

Authors:  Yang Wang; Guo-Wei Wei; Siyang Yang
Journal:  Int J Biomed Imaging       Date:  2012-01-16
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