Literature DB >> 22207753

Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.

Stéphane Vuilleumier1, Valentina N Khmelenina, Françoise Bringel, Alexandr S Reshetnikov, Aurélie Lajus, Sophie Mangenot, Zoé Rouy, Huub J M Op den Camp, Mike S M Jetten, Alan A Dispirito, Peter Dunfield, Martin G Klotz, Jeremy D Semrau, Lisa Y Stein, Valérie Barbe, Claudine Médigue, Yuri A Trotsenko, Marina G Kalyuzhnaya.   

Abstract

Methylomicrobium strains are widespread in saline environments. Here, we report the complete genome sequence of Methylomicrobium alcaliphilum 20Z, a haloalkaliphilic methanotrophic bacterium, which will provide the basis for detailed characterization of the core pathways of both single-carbon metabolism and responses to osmotic and high-pH stresses. Final assembly of the genome sequence revealed that this bacterium contains a 128-kb plasmid, making M. alcaliphilum 20Z the first methanotrophic bacterium of known genome sequence for which a plasmid has been reported.

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Year:  2012        PMID： 22207753      PMCID： PMC3256673          DOI： 10.1128/JB.06392-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia.

Authors:  Huub J M Op den Camp; Tajul Islam; Matthew B Stott; Harry R Harhangi; Alexander Hynes; Stefan Schouten; Mike S M Jetten; Nils-Kåre Birkeland; Arjan Pol; Peter F Dunfield
Journal:  Environ Microbiol Rep       Date:  2009-03-03       Impact factor: 3.541

2.  Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria.

Authors:  Martin G Klotz; Markus C Schmid; Marc Strous; Huub J M op den Camp; Mike S M Jetten; Alan B Hooper
Journal:  Environ Microbiol       Date:  2008-08-28       Impact factor: 5.491

Review 3.  Methanotrophic bacteria.

Authors:  R S Hanson; T E Hanson
Journal:  Microbiol Rev       Date:  1996-06

4.  Autotrophic methanotrophy in verrucomicrobia: Methylacidiphilum fumariolicum SolV uses the Calvin-Benson-Bassham cycle for carbon dioxide fixation.

Authors:  Ahmad F Khadem; Arjan Pol; Adam Wieczorek; Seyed S Mohammadi; Kees-Jan Francoijs; Henk G Stunnenberg; Mike S M Jetten; Huub J M Op den Camp
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

5.  Characterization of the ectoine biosynthesis genes of haloalkalotolerant obligate methanotroph "Methylomicrobium alcaliphilum 20Z".

Authors:  Alexander S Reshetnikov; Valentina N Khmelenina; Yuri A Trotsenko
Journal:  Arch Microbiol       Date:  2005-11-10       Impact factor: 2.552

Review 6.  Methanotrophs and copper.

Authors:  Jeremy D Semrau; Alan A DiSpirito; Sukhwan Yoon
Journal:  FEMS Microbiol Rev       Date:  2010-01-30       Impact factor: 16.408

7.  Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.

Authors:  Mette M Svenning; Anne Grethe Hestnes; Ingvild Wartiainen; Lisa Y Stein; Martin G Klotz; Marina G Kalyuzhnaya; Anja Spang; Françoise Bringel; Stéphane Vuilleumier; Aurélie Lajus; Claudine Médigue; David C Bruce; Jan-Fang Cheng; Lynne Goodwin; Natalia Ivanova; James Han; Cliff S Han; Loren Hauser; Brittany Held; Miriam L Land; Alla Lapidus; Susan Lucas; Matt Nolan; Sam Pitluck; Tanja Woyke
Journal:  J Bacteriol       Date:  2011-07-01       Impact factor: 3.490

8.  Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium.

Authors:  Marina G Kalyuzhnaya; Valentina Khmelenina; Bulat Eshinimaev; Dimitry Sorokin; Hiroyuki Fuse; Mary Lidstrom; Yuri Trotsenko
Journal:  Int J Syst Evol Microbiol       Date:  2008-03       Impact factor: 2.747

9.  High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.

Authors:  Jean-Marc Aury; Corinne Cruaud; Valérie Barbe; Odile Rogier; Sophie Mangenot; Gaelle Samson; Julie Poulain; Véronique Anthouard; Claude Scarpelli; François Artiguenave; Patrick Wincker
Journal:  BMC Genomics       Date:  2008-12-16       Impact factor: 3.969

10.  A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs.

Authors:  Patricia L Tavormina; Victoria J Orphan; Marina G Kalyuzhnaya; Mike S M Jetten; Martin G Klotz
Journal:  Environ Microbiol Rep       Date:  2011-02       Impact factor: 3.541
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  22 in total

Review 1.  Architecture and active site of particulate methane monooxygenase.

Authors:  Megen A Culpepper; Amy C Rosenzweig
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-06-23       Impact factor: 8.250

2.  Genome Characteristics of a Novel Type I Methanotroph (Sn10-6) Isolated from a Flooded Indian Rice Field.

Authors:  Monali C Rahalkar; Pranitha S Pandit; Prashant K Dhakephalkar; Soham Pore; Preeti Arora; Neelam Kapse
Journal:  Microb Ecol       Date:  2015-11-07       Impact factor: 4.552

3.  A distinct pathway for tetrahymanol synthesis in bacteria.

Authors:  Amy B Banta; Jeremy H Wei; Paula V Welander
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

4.  Complete sequence analysis of two methanotroph-specific repABC-containing plasmids from Methylocystis sp. strain SC2.

Authors:  Bomba Dam; Michael Kube; Somasri Dam; Richard Reinhardt; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2012-04-13       Impact factor: 4.792

5.  Systems Metabolic Engineering of Methanotrophic Bacteria for Biological Conversion of Methane to Value-Added Compounds.

Authors:  Shuqi Guo; Diep Thi Ngoc Nguyen; Tin Hoang Trung Chau; Qiang Fei; Eun Yeol Lee
Journal:  Adv Biochem Eng Biotechnol       Date:  2022       Impact factor: 2.635

Review 6.  Biochemistry of aerobic biological methane oxidation.

Authors:  Christopher W Koo; Amy C Rosenzweig
Journal:  Chem Soc Rev       Date:  2021-01-25       Impact factor: 54.564

7.  Examining the impact of acetylene on N-fixation and the active sediment microbial community.

Authors:  Robinson W Fulweiler; Elise M Heiss; Mary Kate Rogener; Silvia E Newell; Gary R LeCleir; Sarah M Kortebein; Steven W Wilhelm
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

Review 8.  Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker.

Authors:  Claudia Knief
Journal:  Front Microbiol       Date:  2015-12-15       Impact factor: 5.640

9.  Diverse electron sources support denitrification under hypoxia in the obligate methanotroph Methylomicrobium album strain BG8.

Authors:  K Dimitri Kits; Dustin J Campbell; Albert R Rosana; Lisa Y Stein
Journal:  Front Microbiol       Date:  2015-10-06       Impact factor: 5.640

10.  Genome analysis coupled with physiological studies reveals a diverse nitrogen metabolism in Methylocystis sp. strain SC2.

Authors:  Bomba Dam; Somasri Dam; Jochen Blom; Werner Liesack
Journal:  PLoS One       Date:  2013-10-10       Impact factor: 3.240
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