Literature DB >> 22207204

The interface of transcription and DNA replication in the mitochondria.

Rajesh Kasiviswanathan1, Tammy R L Collins, William C Copeland.   

Abstract

DNA replication of the mitochondrial genome is unique in that replication is not primed by RNA derived from dedicated primases, but instead by extension of processed RNA transcripts laid down by the mitochondrial RNA polymerase. Thus, the RNA polymerase serves not only to generate the transcripts but also the primers needed for mitochondrial DNA replication. The interface between this transcription and DNA replication is not well understood but must be highly regulated and coordinated to carry out both mitochondrial DNA replication and transcription. This review focuses on the extension of RNA primers for DNA replication by the replication machinery and summarizes the current models of DNA replication in mitochondria as well as the proteins involved in mitochondrial DNA replication, namely, the DNA polymerase γ and its accessory subunit, the mitochondrial DNA helicase, the single-stranded DNA binding protein, topoisomerase I and IIIα and RNaseH1. This article is part of a Special Issue entitled: Mitochondrial Gene Expression. Published by Elsevier B.V.

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Year:  2011        PMID: 22207204      PMCID: PMC3334424          DOI: 10.1016/j.bbagrm.2011.12.005

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  111 in total

1.  A truncated form of DNA topoisomerase IIbeta associates with the mtDNA genome in mammalian mitochondria.

Authors:  Robert L Low; Shayla Orton; David B Friedman
Journal:  Eur J Biochem       Date:  2003-10

2.  The crystal structure of the bifunctional primase-helicase of bacteriophage T7.

Authors:  Eric A Toth; Ying Li; Michael R Sawaya; Yifan Cheng; Tom Ellenberger
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

3.  The mitochondrial DNA replication bubble has not burst.

Authors:  Daniel F Bogenhagen; David A Clayton
Journal:  Trends Biochem Sci       Date:  2003-07       Impact factor: 13.807

4.  Characterization of novel reverse transcriptase and other RNA-associated catalytic activities by human DNA polymerase gamma: importance in mitochondrial DNA replication.

Authors:  Eisuke Murakami; Joy Y Feng; Harold Lee; Jeremiah Hanes; Kenneth A Johnson; Karen S Anderson
Journal:  J Biol Chem       Date:  2003-07-10       Impact factor: 5.157

5.  Concluding remarks: The mitochondrial DNA replication bubble has not burst.

Authors:  Daniel F Bogenhagen; David A Clayton
Journal:  Trends Biochem Sci       Date:  2003-08       Impact factor: 13.807

6.  Composition and dynamics of human mitochondrial nucleoids.

Authors:  Nuria Garrido; Lorena Griparic; Eija Jokitalo; Jorma Wartiovaara; Alexander M van der Bliek; Johannes N Spelbrink
Journal:  Mol Biol Cell       Date:  2003-04       Impact factor: 4.138

7.  TWINKLE Has 5' -> 3' DNA helicase activity and is specifically stimulated by mitochondrial single-stranded DNA-binding protein.

Authors:  Jenny A Korhonen; Martina Gaspari; Maria Falkenberg
Journal:  J Biol Chem       Date:  2003-09-15       Impact factor: 5.157

8.  Physiological and biochemical defects in functional interactions of mitochondrial DNA polymerase and DNA-binding mutants of single-stranded DNA-binding protein.

Authors:  Carol L Farr; Yuichi Matsushima; Anthony T Lagina; Ningguang Luo; Laurie S Kaguni
Journal:  J Biol Chem       Date:  2004-01-30       Impact factor: 5.157

9.  Response: The mitochondrial DNA replication bubble has not burst.

Authors:  Ian J Holt; Howard T Jacobs
Journal:  Trends Biochem Sci       Date:  2003-07       Impact factor: 13.807

10.  Mammalian mitochondrial DNA replicates bidirectionally from an initiation zone.

Authors:  Mark Bowmaker; Ming Yao Yang; Takehiro Yasukawa; Aurelio Reyes; Howard T Jacobs; Joel A Huberman; Ian J Holt
Journal:  J Biol Chem       Date:  2003-09-23       Impact factor: 5.157

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  25 in total

Review 1.  Mitochondrial DNA damage and its consequences for mitochondrial gene expression.

Authors:  Susan D Cline
Journal:  Biochim Biophys Acta       Date:  2012-06-19

2.  Import of desired nucleic acid sequences using addressing motif of mitochondrial ribosomal 5S-rRNA for fluorescent in vivo hybridization of mitochondrial DNA and RNA.

Authors:  Jaroslav Zelenka; Lukáš Alán; Martin Jabůrek; Petr Ježek
Journal:  J Bioenerg Biomembr       Date:  2014-02-23       Impact factor: 2.945

3.  Novel Lines of Evidence for the Asymmetric Strand Displacement Model of Mitochondrial DNA Replication.

Authors:  Chih-Lin Hsieh
Journal:  Mol Cell Biol       Date:  2019-01-03       Impact factor: 4.272

4.  Mapping topoisomerase sites in mitochondrial DNA with a poisonous mitochondrial topoisomerase I (Top1mt).

Authors:  Ilaria Dalla Rosa; Shar-Yin N Huang; Keli Agama; Salim Khiati; Hongliang Zhang; Yves Pommier
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

Review 5.  Mitochondrial DNA: A disposable genome?

Authors:  Inna N Shokolenko; Mikhail F Alexeyev
Journal:  Biochim Biophys Acta       Date:  2015-06-10

6.  Regulation of the human Suv3 helicase on DNA by inorganic cofactors.

Authors:  Susanne T Venø; Marie B Witt; Tomasz Kulikowicz; Vilhelm A Bohr; Tinna Stevnsner
Journal:  Biochimie       Date:  2014-11-21       Impact factor: 4.079

Review 7.  Protecting the mitochondrial powerhouse.

Authors:  Morten Scheibye-Knudsen; Evandro F Fang; Deborah L Croteau; David M Wilson; Vilhelm A Bohr
Journal:  Trends Cell Biol       Date:  2014-12-11       Impact factor: 20.808

Review 8.  Mitochondrial DNA maintenance: an appraisal.

Authors:  Alexander T Akhmedov; José Marín-García
Journal:  Mol Cell Biochem       Date:  2015-08-19       Impact factor: 3.396

9.  Regulation of mitochondrial genome replication by hypoxia: The role of DNA oxidation in D-loop region.

Authors:  Viktor M Pastukh; Olena M Gorodnya; Mark N Gillespie; Mykhaylo V Ruchko
Journal:  Free Radic Biol Med       Date:  2016-04-25       Impact factor: 7.376

Review 10.  Mitochondrial DNA repair: a novel therapeutic target for heart failure.

Authors:  José Marín-García
Journal:  Heart Fail Rev       Date:  2016-09       Impact factor: 4.214

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