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Literature DB >> 22205510

Gene expression deconvolution in linear space.

Yi Zhong, Zhandong Liu.

Abstract

Mesh：

Year: 2011 PMID： 22205510 DOI： 10.1038/nmeth.1830

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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2 in total

Review 1. Microarray data normalization and transformation.

Authors: John Quackenbush
Journal: Nat Genet Date: 2002-12 Impact factor: 38.330

2. Cell type-specific gene expression differences in complex tissues.

Authors: Shai S Shen-Orr; Robert Tibshirani; Purvesh Khatri; Dale L Bodian; Frank Staedtler; Nicholas M Perry; Trevor Hastie; Minnie M Sarwal; Mark M Davis; Atul J Butte
Journal: Nat Methods Date: 2010-03-07 Impact factor: 28.547

2 in total

25 in total

Review 1. Systems immunology: just getting started.

Authors: Mark M Davis; Cristina M Tato; David Furman
Journal: Nat Immunol Date: 2017-06-20 Impact factor: 25.606

2. MMAD: microarray microdissection with analysis of differences is a computational tool for deconvoluting cell type-specific contributions from tissue samples.

Authors: David A Liebner; Kun Huang; Jeffrey D Parvin
Journal: Bioinformatics Date: 2013-10-01 Impact factor: 6.937

3. Dissecting differential signals in high-throughput data from complex tissues.

Authors: Ziyi Li; Zhijin Wu; Peng Jin; Hao Wu
Journal: Bioinformatics Date: 2019-10-15 Impact factor: 6.937

4. The prognostic landscape of genes and infiltrating immune cells across human cancers.

Authors: Andrew J Gentles; Aaron M Newman; Chih Long Liu; Scott V Bratman; Weiguo Feng; Dongkyoon Kim; Viswam S Nair; Yue Xu; Amanda Khuong; Chuong D Hoang; Maximilian Diehn; Robert B West; Sylvia K Plevritis; Ash A Alizadeh
Journal: Nat Med Date: 2015-07-20 Impact factor: 53.440

5. DeMix: deconvolution for mixed cancer transcriptomes using raw measured data.

Authors: Jaeil Ahn; Ying Yuan; Giovanni Parmigiani; Milind B Suraokar; Lixia Diao; Ignacio I Wistuba; Wenyi Wang
Journal: Bioinformatics Date: 2013-05-27 Impact factor: 6.937

6. Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx.

Authors: Chloé B Steen; Chih Long Liu; Ash A Alizadeh; Aaron M Newman
Journal: Methods Mol Biol Date: 2020

7. ICeD-T Provides Accurate Estimates of Immune Cell Abundance in Tumor Samples by Allowing for Aberrant Gene Expression Patterns.

Authors: Douglas R Wilson; Chong Jin; Joseph G Ibrahim; Wei Sun
Journal: J Am Stat Assoc Date: 2019-09-16 Impact factor: 5.033