Literature DB >> 22204754

Consistent segmentation using a Rician classifier.

Snehashis Roy1, Aaron Carass, Pierre-Louis Bazin, Susan Resnick, Jerry L Prince.   

Abstract

Several popular classification algorithms used to segment magnetic resonance brain images assume that the image intensities, or log-transformed intensities, satisfy a finite Gaussian mixture model. In these methods, the parameters of the mixture model are estimated and the posterior probabilities for each tissue class are used directly as soft segmentations or combined to form a hard segmentation. It is suggested and shown in this paper that a Rician mixture model fits the observed data better than a Gaussian model. Accordingly, a Rician mixture model is formulated and used within an expectation maximization (EM) framework to yield a new tissue classification algorithm called Rician Classifier using EM (RiCE). It is shown using both simulated and real data that RiCE yields comparable or better performance to that of algorithms based on the finite Gaussian mixture model. As well, we show that RiCE yields more consistent segmentation results when used on images of the same individual acquired with different T1-weighted pulse sequences. Therefore, RiCE has the potential to stabilize segmentation results in brain studies involving heterogeneous acquisition sources as is typically found in both multi-center and longitudinal studies.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22204754      PMCID: PMC3267889          DOI: 10.1016/j.media.2011.12.001

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  47 in total

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Authors:  Koen Van Leemput; Frederik Maes; Dirk Vandermeulen; Paul Suetens
Journal:  IEEE Trans Med Imaging       Date:  2003-01       Impact factor: 10.048

2.  Longitudinal magnetic resonance imaging studies of older adults: a shrinking brain.

Authors:  Susan M Resnick; Dzung L Pham; Michael A Kraut; Alan B Zonderman; Christos Davatzikos
Journal:  J Neurosci       Date:  2003-04-15       Impact factor: 6.167

3.  CRUISE: cortical reconstruction using implicit surface evolution.

Authors:  Xiao Han; Dzung L Pham; Duygu Tosun; Maryam E Rettmann; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

4.  Topology-preserving tissue classification of magnetic resonance brain images.

Authors:  Pierre-Louis Bazin; Dzung L Pham
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

5.  Automated extraction of the cortical sulci based on a supervised learning approach.

Authors:  Zhuowen Tu; Songfeng Zheng; Alan L Yuille; Allan L Reiss; Rebecca A Dutton; Agatha D Lee; Albert M Galaburda; Ivo Dinov; Paul M Thompson; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

6.  Partial volume tissue classification of multichannel magnetic resonance images-a mixel model.

Authors:  H S Choi; D R Haynor; Y Kim
Journal:  IEEE Trans Med Imaging       Date:  1991       Impact factor: 10.048

7.  A novel framework for segmentation of deep brain structures based on Markov dependence tree.

Authors:  Jue Wu; Albert C S Chung
Journal:  Neuroimage       Date:  2009-03-13       Impact factor: 6.556

8.  Information measures-based intensity standardization of MRI.

Authors:  Renjie He; Sushmita Datta; Guozhi Tao; Ponnada A Narayana
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9.  Fully Bayesian joint model for MR brain scan tissue and structure segmentation.

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Authors:  Declan T Chard; Geoffrey J M Parker; Colette M B Griffin; Alan J Thompson; David H Miller
Journal:  J Magn Reson Imaging       Date:  2002-03       Impact factor: 4.813

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  7 in total

1.  Three-dimensional brain magnetic resonance imaging segmentation via knowledge-driven decision theory.

Authors:  Nishant Verma; Gautam S Muralidhar; Alan C Bovik; Matthew C Cowperthwaite; Mark G Burnett; Mia K Markey
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2.  Random forest regression for magnetic resonance image synthesis.

Authors:  Amod Jog; Aaron Carass; Snehashis Roy; Dzung L Pham; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-08-31       Impact factor: 8.545

3.  Magnetic Resonance Image Example-Based Contrast Synthesis.

Authors:  Snehashis Roy; Aaron Carass; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2013-09-16       Impact factor: 10.048

4.  MR image synthesis by contrast learning on neighborhood ensembles.

Authors:  Amod Jog; Aaron Carass; Snehashis Roy; Dzung L Pham; Jerry L Prince
Journal:  Med Image Anal       Date:  2015-05-18       Impact factor: 8.545

5.  Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis.

Authors:  Aaron Carass; Snehashis Roy; Adrian Gherman; Jacob C Reinhold; Andrew Jesson; Tal Arbel; Oskar Maier; Heinz Handels; Mohsen Ghafoorian; Bram Platel; Ariel Birenbaum; Hayit Greenspan; Dzung L Pham; Ciprian M Crainiceanu; Peter A Calabresi; Jerry L Prince; William R Gray Roncal; Russell T Shinohara; Ipek Oguz
Journal:  Sci Rep       Date:  2020-05-19       Impact factor: 4.379

6.  SM-SegNet: A Lightweight Squeeze M-SegNet for Tissue Segmentation in Brain MRI Scans.

Authors:  Nagaraj Yamanakkanavar; Jae Young Choi; Bumshik Lee
Journal:  Sensors (Basel)       Date:  2022-07-08       Impact factor: 3.847

7.  Automatic segmentation of brain MRI using a novel patch-wise U-net deep architecture.

Authors:  Bumshik Lee; Nagaraj Yamanakkanavar; Jae Young Choi
Journal:  PLoS One       Date:  2020-08-03       Impact factor: 3.240

  7 in total

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