Literature DB >> 22204671

Chemical oscillators in structured media.

Irving R Epstein1, Vladimir K Vanag, Anna C Balazs, Olga Kuksenok, Pratyush Dayal, Amitabh Bhattacharya.   

Abstract

Evolution is a characteristic feature of living systems, and many fundamental processes in life, including the cell cycle, take place in a periodic fashion. From a chemistry perspective, these repeating phenomena suggest the question of whether reactions in which concentrations oscillate could provide a basis and/or useful models for the behavior of organisms, and perhaps even their ability to evolve. In this Account, we examine several aspects of the behavior of the prototype oscillating chemical reaction, the Belousov-Zhabotinsky (BZ) system, carried out in microemulsions, arrays of micrometer-sized aqueous droplets suspended in oil, or hydrogels. Each of these environments contains elements of the compartmentalization that likely played a role in the development of the first living cells, and within them we observe behaviors not found in the BZ reaction in simple aqueous solution. Several of these phenomena resemble traits displayed by living organisms. For example, the nanodroplets in a BZ microemulsion "communicate" with each other through a phenomenon analogous to quorum sensing in bacteria to produce a remarkable variety of patterns and waves on length scales 10(5) times the size of a single droplet. A photosensitive version can "remember" an imposed image. Larger, micrometer-sized droplets exhibit similarly rich behavior and allow for the observation and control of individual droplets. These droplets offer promise for building arrays capable of computation by varying the strength and sign of the coupling between drops. Gels that incorporate a BZ catalyst and are immersed in a solution containing the BZ reactants change their shape and volume in oscillations that follow the variation in the redox state of the catalyst. Using this phenomenon, we can construct phototactic gel "worms" or segments of gel that attract one another. Whether such systems will provide more realistic caricatures of life, and whether they can serve as useful materials will largely depend on the successful integration of various properties, including communication, motion, and memory, which we observed in separate experiments. Theoretical approaches that couple reaction and diffusion processes to mechanical and other material properties are likely to play a key role in this integration, and we describe one such approach. The evolution of systems of coupled chemical oscillators presents another challenge to the development of these systems, but one that we expect to be solved.

Entities:  

Year:  2011        PMID: 22204671     DOI: 10.1021/ar200251j

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  10 in total

Review 1.  Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials.

Authors:  Xuewen Du; Jie Zhou; Junfeng Shi; Bing Xu
Journal:  Chem Rev       Date:  2015-12-08       Impact factor: 60.622

2.  Reconfigurable assemblies of active, autochemotactic gels.

Authors:  Pratyush Dayal; Olga Kuksenok; Anna C Balazs
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-27       Impact factor: 11.205

3.  Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator.

Authors:  Maximilian Weitz; Jongmin Kim; Korbinian Kapsner; Erik Winfree; Elisa Franco; Friedrich C Simmel
Journal:  Nat Chem       Date:  2014-02-16       Impact factor: 24.427

Review 4.  Reaction-diffusion processes at the nano- and microscales.

Authors:  Irving R Epstein; Bing Xu
Journal:  Nat Nanotechnol       Date:  2016-04       Impact factor: 39.213

Review 5.  Enzymatic Noncovalent Synthesis.

Authors:  Hongjian He; Weiyi Tan; Jiaqi Guo; Meihui Yi; Adrianna N Shy; Bing Xu
Journal:  Chem Rev       Date:  2020-08-19       Impact factor: 60.622

6.  Systems and synthetic biology approaches in understanding biological oscillators.

Authors:  Zhengda Li; Qiong Yang
Journal:  Quant Biol       Date:  2017-11-02

7.  Emergent chemical behavior in variable-volume protocells.

Authors:  Ben Shirt-Ediss; Ricard V Solé; Kepa Ruiz-Mirazo
Journal:  Life (Basel)       Date:  2015-01-13

8.  Adapting to Adaptations: Behavioural Strategies that are Robust to Mutations and Other Organisational-Transformations.

Authors:  Matthew D Egbert; Juan Pérez-Mercader
Journal:  Sci Rep       Date:  2016-01-08       Impact factor: 4.379

Review 9.  A Review on Recent Advances in Stabilizing Peptides/Proteins upon Fabrication in Hydrogels from Biodegradable Polymers.

Authors:  Faisal Raza; Hajra Zafar; Ying Zhu; Yuan Ren; Aftab -Ullah; Asif Ullah Khan; Xinyi He; Han Han; Md Aquib; Kofi Oti Boakye-Yiadom; Liang Ge
Journal:  Pharmaceutics       Date:  2018-01-18       Impact factor: 6.321

10.  Towards Functional Droplet Architectures: a Belousov-Zhabotinsky Medium for Networks.

Authors:  Kai Ming Chang; Maurits R R de Planque; Klaus-Peter Zauner
Journal:  Sci Rep       Date:  2018-08-23       Impact factor: 4.379

  10 in total

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