| Literature DB >> 22199988 |
Viktor Vrábel, Július Sivý, Lubomír Svorc, Peter Safář, Jozefína Zužiová.
Abstract
The title compound, C(11)H(22)NO(2) (+)·I(-), is a chiral mol-ecule with five stereogenic centres. The absolute configuration was assigned from the synthesis and confirmed by the structure determination. The central six-membered ring of the indolizine system adopts a chair conformation, with two atoms displaced by -0.690 (2) and 0.550 (2) Å from the plane of the other four atoms. The conformation of the pyrrolidine ring is close to that of an envelope, with the flap atom displaced by 0.563 (2) Å from the plane of the remaining four atoms. In the crystal, there are two O-H⋯I hydrogen bonds.Entities:
Year: 2011 PMID: 22199988 PMCID: PMC3239140 DOI: 10.1107/S1600536811051099
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H22NO2+·I− | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 3330 reflections |
| θ = 3.6–29.4° | |
| µ = 2.34 mm−1 | |
| β = 110.3688 (19)° | Prism, colourless |
| 0.30 × 0.25 × 0.20 mm | |
| Oxford Diffraction Gemini R CCD diffractometer | 3330 independent reflections |
| Radiation source: fine-focus sealed tube | 3176 reflections with |
| graphite | |
| Detector resolution: 10.434 pixels mm-1 | θmax = 29.4°, θmin = 3.6° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 18648 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.64 e Å−3 | |
| 3330 reflections | Δρmin = −0.69 e Å−3 |
| 141 parameters | Extinction correction: |
| 1 restraint | Extinction coefficient: 0.044 (2) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1359 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.026 (17) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C2 | 0.5506 (4) | 0.1519 (3) | 0.1098 (4) | 0.0581 (7) | |
| H2A | 0.4507 | 0.2056 | 0.0599 | 0.070* | |
| H2B | 0.6055 | 0.1385 | 0.0237 | 0.070* | |
| C3 | 0.4953 (5) | 0.0317 (3) | 0.1635 (5) | 0.0735 (9) | |
| H3A | 0.5487 | −0.0365 | 0.1238 | 0.088* | |
| H3B | 0.3697 | 0.0229 | 0.1134 | 0.088* | |
| C4 | 0.5545 (4) | 0.0321 (3) | 0.3627 (4) | 0.0538 (6) | |
| H4A | 0.4590 | 0.0099 | 0.4012 | 0.065* | |
| H4B | 0.6495 | −0.0256 | 0.4122 | 0.065* | |
| C5 | 0.6143 (3) | 0.1645 (2) | 0.4157 (3) | 0.0376 (4) | |
| H5 | 0.5115 | 0.2133 | 0.4092 | 0.045* | |
| C6 | 0.7478 (3) | 0.1787 (2) | 0.5989 (3) | 0.0358 (4) | |
| H6 | 0.7088 | 0.1294 | 0.6787 | 0.043* | |
| C7 | 0.9331 (3) | 0.13766 (19) | 0.6181 (3) | 0.0336 (4) | |
| H7 | 1.0133 | 0.1641 | 0.7321 | 0.040* | |
| C8 | 0.9902 (3) | 0.19544 (19) | 0.4777 (3) | 0.0340 (4) | |
| H8 | 0.9914 | 0.2854 | 0.4913 | 0.041* | |
| C9 | 0.8601 (3) | 0.1627 (2) | 0.2992 (3) | 0.0395 (5) | |
| H9A | 0.8994 | 0.1978 | 0.2103 | 0.047* | |
| H9B | 0.8562 | 0.0737 | 0.2853 | 0.047* | |
| C10 | 0.6736 (4) | 0.3470 (2) | 0.2554 (4) | 0.0565 (7) | |
| H10A | 0.7083 | 0.3703 | 0.1592 | 0.085* | |
| H10B | 0.7517 | 0.3834 | 0.3603 | 0.085* | |
| H10C | 0.5572 | 0.3757 | 0.2352 | 0.085* | |
| C11 | 1.1720 (3) | 0.1536 (3) | 0.4865 (3) | 0.0477 (6) | |
| H11A | 1.1688 | 0.0662 | 0.4598 | 0.057* | |
| H11B | 1.2044 | 0.1977 | 0.3994 | 0.057* | |
| C12 | 1.3095 (3) | 0.1765 (3) | 0.6658 (4) | 0.0586 (7) | |
| H12A | 1.4233 | 0.1615 | 0.6611 | 0.088* | |
| H12B | 1.2894 | 0.1220 | 0.7492 | 0.088* | |
| H12C | 1.3020 | 0.2606 | 0.6998 | 0.088* | |
| N1 | 0.6791 (2) | 0.20968 (18) | 0.2730 (2) | 0.0373 (4) | |
| O1 | 0.7466 (2) | 0.30534 (17) | 0.6448 (3) | 0.0537 (5) | |
| H1 | 0.8265 | 0.3185 | 0.7367 | 0.080* | |
| O2 | 0.9442 (2) | 0.00727 (14) | 0.6053 (2) | 0.0444 (4) | |
| H2 | 0.9405 | −0.0249 | 0.6945 | 0.067* | |
| I1 | 0.11548 (2) | 0.38255 (2) | 0.028309 (17) | 0.05615 (7) |
| C2 | 0.0441 (13) | 0.079 (2) | 0.0373 (12) | −0.0013 (13) | −0.0032 (10) | −0.0131 (12) |
| C3 | 0.0651 (18) | 0.070 (2) | 0.072 (2) | −0.0226 (16) | 0.0065 (16) | −0.0302 (17) |
| C4 | 0.0494 (13) | 0.0441 (13) | 0.0663 (17) | −0.0150 (11) | 0.0180 (12) | −0.0109 (12) |
| C5 | 0.0291 (9) | 0.0385 (10) | 0.0444 (12) | −0.0017 (8) | 0.0118 (8) | −0.0050 (9) |
| C6 | 0.0329 (9) | 0.0395 (11) | 0.0371 (10) | 0.0043 (8) | 0.0150 (8) | −0.0039 (9) |
| C7 | 0.0351 (10) | 0.0352 (10) | 0.0304 (10) | 0.0048 (8) | 0.0112 (8) | 0.0018 (8) |
| C8 | 0.0288 (9) | 0.0361 (10) | 0.0351 (10) | 0.0007 (8) | 0.0088 (8) | 0.0050 (8) |
| C9 | 0.0354 (10) | 0.0501 (12) | 0.0321 (10) | 0.0021 (9) | 0.0107 (8) | 0.0033 (9) |
| C10 | 0.0488 (13) | 0.0441 (14) | 0.0606 (15) | 0.0033 (9) | −0.0011 (11) | 0.0162 (10) |
| C11 | 0.0309 (10) | 0.0685 (17) | 0.0435 (13) | 0.0013 (10) | 0.0127 (10) | 0.0097 (11) |
| C12 | 0.0313 (11) | 0.082 (2) | 0.0570 (16) | −0.0028 (12) | 0.0086 (11) | 0.0059 (15) |
| N1 | 0.0317 (8) | 0.0411 (9) | 0.0318 (9) | −0.0007 (7) | 0.0017 (7) | 0.0010 (7) |
| O1 | 0.0487 (10) | 0.0491 (10) | 0.0534 (10) | 0.0136 (8) | 0.0054 (8) | −0.0195 (8) |
| O2 | 0.0575 (10) | 0.0344 (8) | 0.0492 (10) | 0.0114 (7) | 0.0286 (8) | 0.0114 (7) |
| I1 | 0.06754 (11) | 0.06164 (10) | 0.04070 (9) | −0.00802 (11) | 0.02063 (6) | −0.01043 (10) |
| C2—C3 | 1.494 (5) | C8—C9 | 1.522 (3) |
| C2—N1 | 1.520 (3) | C8—C11 | 1.533 (3) |
| C2—H2A | 0.9700 | C8—H8 | 0.9800 |
| C2—H2B | 0.9700 | C9—N1 | 1.510 (3) |
| C3—C4 | 1.533 (5) | C9—H9A | 0.9700 |
| C3—H3A | 0.9700 | C9—H9B | 0.9700 |
| C3—H3B | 0.9700 | C10—N1 | 1.493 (3) |
| C4—C5 | 1.528 (3) | C10—H10A | 0.9600 |
| C4—H4A | 0.9700 | C10—H10B | 0.9600 |
| C4—H4B | 0.9700 | C10—H10C | 0.9600 |
| C5—N1 | 1.523 (3) | C11—C12 | 1.529 (4) |
| C5—C6 | 1.527 (3) | C11—H11A | 0.9700 |
| C5—H5 | 0.9800 | C11—H11B | 0.9700 |
| C6—O1 | 1.423 (3) | C12—H12A | 0.9600 |
| C6—C7 | 1.535 (3) | C12—H12B | 0.9600 |
| C6—H6 | 0.9800 | C12—H12C | 0.9600 |
| C7—O2 | 1.421 (3) | O1—H1 | 0.8200 |
| C7—C8 | 1.519 (3) | O2—H2 | 0.8200 |
| C7—H7 | 0.9800 | ||
| C3—C2—N1 | 106.7 (2) | C7—C8—C11 | 113.04 (18) |
| C3—C2—H2A | 110.4 | C9—C8—C11 | 108.61 (19) |
| N1—C2—H2A | 110.4 | C7—C8—H8 | 108.5 |
| C3—C2—H2B | 110.4 | C9—C8—H8 | 108.5 |
| N1—C2—H2B | 110.4 | C11—C8—H8 | 108.5 |
| H2A—C2—H2B | 108.6 | N1—C9—C8 | 112.42 (18) |
| C2—C3—C4 | 107.2 (2) | N1—C9—H9A | 109.1 |
| C2—C3—H3A | 110.3 | C8—C9—H9A | 109.1 |
| C4—C3—H3A | 110.3 | N1—C9—H9B | 109.1 |
| C2—C3—H3B | 110.3 | C8—C9—H9B | 109.1 |
| C4—C3—H3B | 110.3 | H9A—C9—H9B | 107.9 |
| H3A—C3—H3B | 108.5 | N1—C10—H10A | 109.5 |
| C5—C4—C3 | 104.9 (2) | N1—C10—H10B | 109.5 |
| C5—C4—H4A | 110.8 | H10A—C10—H10B | 109.5 |
| C3—C4—H4A | 110.8 | N1—C10—H10C | 109.5 |
| C5—C4—H4B | 110.8 | H10A—C10—H10C | 109.5 |
| C3—C4—H4B | 110.8 | H10B—C10—H10C | 109.5 |
| H4A—C4—H4B | 108.8 | C12—C11—C8 | 112.0 (2) |
| N1—C5—C6 | 113.69 (17) | C12—C11—H11A | 109.2 |
| N1—C5—C4 | 104.21 (19) | C8—C11—H11A | 109.2 |
| C6—C5—C4 | 115.0 (2) | C12—C11—H11B | 109.2 |
| N1—C5—H5 | 107.9 | C8—C11—H11B | 109.2 |
| C6—C5—H5 | 107.9 | H11A—C11—H11B | 107.9 |
| C4—C5—H5 | 107.9 | C11—C12—H12A | 109.5 |
| O1—C6—C5 | 106.78 (18) | C11—C12—H12B | 109.5 |
| O1—C6—C7 | 110.46 (18) | H12A—C12—H12B | 109.5 |
| C5—C6—C7 | 114.51 (17) | C11—C12—H12C | 109.5 |
| O1—C6—H6 | 108.3 | H12A—C12—H12C | 109.5 |
| C5—C6—H6 | 108.3 | H12B—C12—H12C | 109.5 |
| C7—C6—H6 | 108.3 | C10—N1—C9 | 110.1 (2) |
| O2—C7—C8 | 108.01 (17) | C10—N1—C2 | 109.6 (2) |
| O2—C7—C6 | 111.47 (18) | C9—N1—C2 | 109.31 (19) |
| C8—C7—C6 | 110.88 (17) | C10—N1—C5 | 112.8 (2) |
| O2—C7—H7 | 108.8 | C9—N1—C5 | 111.69 (16) |
| C8—C7—H7 | 108.8 | C2—N1—C5 | 103.01 (19) |
| C6—C7—H7 | 108.8 | C6—O1—H1 | 109.5 |
| C7—C8—C9 | 109.65 (17) | C7—O2—H2 | 109.5 |
| N1—C2—C3—C4 | 13.6 (3) | C7—C8—C9—N1 | 60.6 (2) |
| C2—C3—C4—C5 | 10.0 (3) | C11—C8—C9—N1 | −175.43 (19) |
| C3—C4—C5—N1 | −29.6 (3) | C7—C8—C11—C12 | −54.9 (3) |
| C3—C4—C5—C6 | −154.8 (2) | C9—C8—C11—C12 | −176.8 (2) |
| N1—C5—C6—O1 | 77.7 (2) | C8—C9—N1—C10 | 71.0 (2) |
| C4—C5—C6—O1 | −162.2 (2) | C8—C9—N1—C2 | −168.5 (2) |
| N1—C5—C6—C7 | −44.9 (3) | C8—C9—N1—C5 | −55.1 (2) |
| C4—C5—C6—C7 | 75.2 (3) | C3—C2—N1—C10 | −152.2 (3) |
| O1—C6—C7—O2 | 168.90 (18) | C3—C2—N1—C9 | 87.0 (3) |
| C5—C6—C7—O2 | −70.5 (2) | C3—C2—N1—C5 | −31.8 (3) |
| O1—C6—C7—C8 | −70.7 (2) | C6—C5—N1—C10 | −78.1 (2) |
| C5—C6—C7—C8 | 49.9 (2) | C4—C5—N1—C10 | 155.86 (19) |
| O2—C7—C8—C9 | 66.0 (2) | C6—C5—N1—C9 | 46.5 (2) |
| C6—C7—C8—C9 | −56.5 (2) | C4—C5—N1—C9 | −79.5 (2) |
| O2—C7—C8—C11 | −55.4 (2) | C6—C5—N1—C2 | 163.7 (2) |
| C6—C7—C8—C11 | −177.79 (19) | C4—C5—N1—C2 | 37.7 (2) |
| H··· | ||||
| O1—H1···I1i | 0.82 | 2.80 | 3.6187 (18) | 173. |
| O2—H2···I1ii | 0.82 | 2.67 | 3.4798 (16) | 172. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯I1i | 0.82 | 2.80 | 3.6187 (18) | 173 |
| O2—H2⋯I1ii | 0.82 | 2.67 | 3.4798 (16) | 172 |
Symmetry codes: (i) ; (ii) .