Literature DB >> 22199988

(4R,6S,7S,8S,8aS)-6-Ethyl-7,8-dihy-droxy-4-methyl-1,2,3,5,6,7,8,8a-octa-hydro-indolizin-4-ium iodide.

Viktor Vrábel, Július Sivý, Lubomír Svorc, Peter Safář, Jozefína Zužiová.   

Abstract

The title compound, C(11)H(22)NO(2) (+)·I(-), is a chiral mol-ecule with five stereogenic centres. The absolute configuration was assigned from the synthesis and confirmed by the structure determination. The central six-membered ring of the indolizine system adopts a chair conformation, with two atoms displaced by -0.690 (2) and 0.550 (2) Å from the plane of the other four atoms. The conformation of the pyrrolidine ring is close to that of an envelope, with the flap atom displaced by 0.563 (2) Å from the plane of the remaining four atoms. In the crystal, there are two O-H⋯I hydrogen bonds.

Entities:  

Year:  2011        PMID: 22199988      PMCID: PMC3239140          DOI: 10.1107/S1600536811051099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indolizine derivatives, see: Gubin et al. (1992 ▶); Gupta et al. (2003 ▶); Malonne et al. (1998 ▶); Medda et al. (2003 ▶); Nardelli (1983 ▶); Pearson & Guo (2001 ▶); Ruprecht et al. (1989 ▶). For puckering analysis, see: Cremer & Pople (1975 ▶). For the preparation, see: Šafář et al. (2010 ▶). For related structures, see: Clark & Reid (1995 ▶); Pedersen (1967 ▶).

Experimental

Crystal data

C11H22NO2 +·I− M = 327.20 Monoclinic, a = 8.18603 (14) Å b = 10.82977 (14) Å c = 8.19874 (13) Å β = 110.3688 (19)° V = 681.39 (2) Å3 Z = 2 Mo Kα radiation μ = 2.34 mm−1 T = 298 K 0.30 × 0.25 × 0.20 mm

Data collection

Oxford Diffraction Gemini R CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.520, T max = 0.638 18648 measured reflections 3330 independent reflections 3176 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.049 S = 0.91 3330 reflections 141 parameters 1 restraint H-atom parameters constrained Δρmax = 0.64 e Å−3 Δρmin = −0.69 e Å−3 Absolute structure: Flack (1983 ▶), 1359 Friedel pairs Flack parameter: −0.026 (17) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: SHELXL97, PLATON (Spek, 2009 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811051099/bq2323sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811051099/bq2323Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811051099/bq2323Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H22NO2+·IF(000) = 328
Mr = 327.20Dx = 1.595 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3330 reflections
a = 8.18603 (14) Åθ = 3.6–29.4°
b = 10.82977 (14) ŵ = 2.34 mm1
c = 8.19874 (13) ÅT = 298 K
β = 110.3688 (19)°Prism, colourless
V = 681.39 (2) Å30.30 × 0.25 × 0.20 mm
Z = 2
Oxford Diffraction Gemini R CCD diffractometer3330 independent reflections
Radiation source: fine-focus sealed tube3176 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 10.434 pixels mm-1θmax = 29.4°, θmin = 3.6°
ω and φ scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −14→14
Tmin = 0.520, Tmax = 0.638l = −11→10
18648 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.019w = 1/[σ2(Fo2) + (0.0335P)2 + 0.2787P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.049(Δ/σ)max < 0.001
S = 0.91Δρmax = 0.64 e Å3
3330 reflectionsΔρmin = −0.69 e Å3
141 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.044 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1359 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.026 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.5506 (4)0.1519 (3)0.1098 (4)0.0581 (7)
H2A0.45070.20560.05990.070*
H2B0.60550.13850.02370.070*
C30.4953 (5)0.0317 (3)0.1635 (5)0.0735 (9)
H3A0.5487−0.03650.12380.088*
H3B0.36970.02290.11340.088*
C40.5545 (4)0.0321 (3)0.3627 (4)0.0538 (6)
H4A0.45900.00990.40120.065*
H4B0.6495−0.02560.41220.065*
C50.6143 (3)0.1645 (2)0.4157 (3)0.0376 (4)
H50.51150.21330.40920.045*
C60.7478 (3)0.1787 (2)0.5989 (3)0.0358 (4)
H60.70880.12940.67870.043*
C70.9331 (3)0.13766 (19)0.6181 (3)0.0336 (4)
H71.01330.16410.73210.040*
C80.9902 (3)0.19544 (19)0.4777 (3)0.0340 (4)
H80.99140.28540.49130.041*
C90.8601 (3)0.1627 (2)0.2992 (3)0.0395 (5)
H9A0.89940.19780.21030.047*
H9B0.85620.07370.28530.047*
C100.6736 (4)0.3470 (2)0.2554 (4)0.0565 (7)
H10A0.70830.37030.15920.085*
H10B0.75170.38340.36030.085*
H10C0.55720.37570.23520.085*
C111.1720 (3)0.1536 (3)0.4865 (3)0.0477 (6)
H11A1.16880.06620.45980.057*
H11B1.20440.19770.39940.057*
C121.3095 (3)0.1765 (3)0.6658 (4)0.0586 (7)
H12A1.42330.16150.66110.088*
H12B1.28940.12200.74920.088*
H12C1.30200.26060.69980.088*
N10.6791 (2)0.20968 (18)0.2730 (2)0.0373 (4)
O10.7466 (2)0.30534 (17)0.6448 (3)0.0537 (5)
H10.82650.31850.73670.080*
O20.9442 (2)0.00727 (14)0.6053 (2)0.0444 (4)
H20.9405−0.02490.69450.067*
I10.11548 (2)0.38255 (2)0.028309 (17)0.05615 (7)
U11U22U33U12U13U23
C20.0441 (13)0.079 (2)0.0373 (12)−0.0013 (13)−0.0032 (10)−0.0131 (12)
C30.0651 (18)0.070 (2)0.072 (2)−0.0226 (16)0.0065 (16)−0.0302 (17)
C40.0494 (13)0.0441 (13)0.0663 (17)−0.0150 (11)0.0180 (12)−0.0109 (12)
C50.0291 (9)0.0385 (10)0.0444 (12)−0.0017 (8)0.0118 (8)−0.0050 (9)
C60.0329 (9)0.0395 (11)0.0371 (10)0.0043 (8)0.0150 (8)−0.0039 (9)
C70.0351 (10)0.0352 (10)0.0304 (10)0.0048 (8)0.0112 (8)0.0018 (8)
C80.0288 (9)0.0361 (10)0.0351 (10)0.0007 (8)0.0088 (8)0.0050 (8)
C90.0354 (10)0.0501 (12)0.0321 (10)0.0021 (9)0.0107 (8)0.0033 (9)
C100.0488 (13)0.0441 (14)0.0606 (15)0.0033 (9)−0.0011 (11)0.0162 (10)
C110.0309 (10)0.0685 (17)0.0435 (13)0.0013 (10)0.0127 (10)0.0097 (11)
C120.0313 (11)0.082 (2)0.0570 (16)−0.0028 (12)0.0086 (11)0.0059 (15)
N10.0317 (8)0.0411 (9)0.0318 (9)−0.0007 (7)0.0017 (7)0.0010 (7)
O10.0487 (10)0.0491 (10)0.0534 (10)0.0136 (8)0.0054 (8)−0.0195 (8)
O20.0575 (10)0.0344 (8)0.0492 (10)0.0114 (7)0.0286 (8)0.0114 (7)
I10.06754 (11)0.06164 (10)0.04070 (9)−0.00802 (11)0.02063 (6)−0.01043 (10)
C2—C31.494 (5)C8—C91.522 (3)
C2—N11.520 (3)C8—C111.533 (3)
C2—H2A0.9700C8—H80.9800
C2—H2B0.9700C9—N11.510 (3)
C3—C41.533 (5)C9—H9A0.9700
C3—H3A0.9700C9—H9B0.9700
C3—H3B0.9700C10—N11.493 (3)
C4—C51.528 (3)C10—H10A0.9600
C4—H4A0.9700C10—H10B0.9600
C4—H4B0.9700C10—H10C0.9600
C5—N11.523 (3)C11—C121.529 (4)
C5—C61.527 (3)C11—H11A0.9700
C5—H50.9800C11—H11B0.9700
C6—O11.423 (3)C12—H12A0.9600
C6—C71.535 (3)C12—H12B0.9600
C6—H60.9800C12—H12C0.9600
C7—O21.421 (3)O1—H10.8200
C7—C81.519 (3)O2—H20.8200
C7—H70.9800
C3—C2—N1106.7 (2)C7—C8—C11113.04 (18)
C3—C2—H2A110.4C9—C8—C11108.61 (19)
N1—C2—H2A110.4C7—C8—H8108.5
C3—C2—H2B110.4C9—C8—H8108.5
N1—C2—H2B110.4C11—C8—H8108.5
H2A—C2—H2B108.6N1—C9—C8112.42 (18)
C2—C3—C4107.2 (2)N1—C9—H9A109.1
C2—C3—H3A110.3C8—C9—H9A109.1
C4—C3—H3A110.3N1—C9—H9B109.1
C2—C3—H3B110.3C8—C9—H9B109.1
C4—C3—H3B110.3H9A—C9—H9B107.9
H3A—C3—H3B108.5N1—C10—H10A109.5
C5—C4—C3104.9 (2)N1—C10—H10B109.5
C5—C4—H4A110.8H10A—C10—H10B109.5
C3—C4—H4A110.8N1—C10—H10C109.5
C5—C4—H4B110.8H10A—C10—H10C109.5
C3—C4—H4B110.8H10B—C10—H10C109.5
H4A—C4—H4B108.8C12—C11—C8112.0 (2)
N1—C5—C6113.69 (17)C12—C11—H11A109.2
N1—C5—C4104.21 (19)C8—C11—H11A109.2
C6—C5—C4115.0 (2)C12—C11—H11B109.2
N1—C5—H5107.9C8—C11—H11B109.2
C6—C5—H5107.9H11A—C11—H11B107.9
C4—C5—H5107.9C11—C12—H12A109.5
O1—C6—C5106.78 (18)C11—C12—H12B109.5
O1—C6—C7110.46 (18)H12A—C12—H12B109.5
C5—C6—C7114.51 (17)C11—C12—H12C109.5
O1—C6—H6108.3H12A—C12—H12C109.5
C5—C6—H6108.3H12B—C12—H12C109.5
C7—C6—H6108.3C10—N1—C9110.1 (2)
O2—C7—C8108.01 (17)C10—N1—C2109.6 (2)
O2—C7—C6111.47 (18)C9—N1—C2109.31 (19)
C8—C7—C6110.88 (17)C10—N1—C5112.8 (2)
O2—C7—H7108.8C9—N1—C5111.69 (16)
C8—C7—H7108.8C2—N1—C5103.01 (19)
C6—C7—H7108.8C6—O1—H1109.5
C7—C8—C9109.65 (17)C7—O2—H2109.5
N1—C2—C3—C413.6 (3)C7—C8—C9—N160.6 (2)
C2—C3—C4—C510.0 (3)C11—C8—C9—N1−175.43 (19)
C3—C4—C5—N1−29.6 (3)C7—C8—C11—C12−54.9 (3)
C3—C4—C5—C6−154.8 (2)C9—C8—C11—C12−176.8 (2)
N1—C5—C6—O177.7 (2)C8—C9—N1—C1071.0 (2)
C4—C5—C6—O1−162.2 (2)C8—C9—N1—C2−168.5 (2)
N1—C5—C6—C7−44.9 (3)C8—C9—N1—C5−55.1 (2)
C4—C5—C6—C775.2 (3)C3—C2—N1—C10−152.2 (3)
O1—C6—C7—O2168.90 (18)C3—C2—N1—C987.0 (3)
C5—C6—C7—O2−70.5 (2)C3—C2—N1—C5−31.8 (3)
O1—C6—C7—C8−70.7 (2)C6—C5—N1—C10−78.1 (2)
C5—C6—C7—C849.9 (2)C4—C5—N1—C10155.86 (19)
O2—C7—C8—C966.0 (2)C6—C5—N1—C946.5 (2)
C6—C7—C8—C9−56.5 (2)C4—C5—N1—C9−79.5 (2)
O2—C7—C8—C11−55.4 (2)C6—C5—N1—C2163.7 (2)
C6—C7—C8—C11−177.79 (19)C4—C5—N1—C237.7 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···I1i0.822.803.6187 (18)173.
O2—H2···I1ii0.822.673.4798 (16)172.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯I1i0.822.803.6187 (18)173
O2—H2⋯I1ii0.822.673.4798 (16)172

Symmetry codes: (i) ; (ii) .

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