Literature DB >> 22199978

(E)-2-Cyano-3-(2,3-dimeth-oxy-phen-yl)acrylic acid.

Aliakbar Dehno Khalaji, Karla Fejfarová, Michal Dušek.   

Abstract

The asymmetric unit of the title compound, C(12)H(11)NO(4), contains two mol-ecules. In the crystal, neighbouring mol-ecules are linked together by O-H⋯O hydrogen bonds into dimers. The dimers are arranged into columns parallel to the a axis, meditated by π-π inter-actions [centroid-centroid distances = 3.856 (3) and 3.857 (3) Å]. The crystal structure is further stabilized by weak inter-molecular C-H⋯O inter-actions. The crystal studied was a non-merohedral twin with a ratio of the twin components of 0.657 (11):0.343 (11).

Entities:  

Year:  2011        PMID: 22199978      PMCID: PMC3239130          DOI: 10.1107/S1600536811051129

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of cyano­acrylic acid derivatives, see: Hagberg et al. (2006 ▶); Kim et al. (2008 ▶); Hara et al. (2003 ▶). For structures and properties of complexes based on carboxyl­ate ligands, see, for example: Zhao et al. (2008 ▶); Wang et al. (2009 ▶); Mitra et al. (2006 ▶); Shit et al. (2009 ▶); Akhbari et al. (2009 ▶).

Experimental

Crystal data

C12H11NO4 M = 233.2 Monoclinic, a = 3.8564 (5) Å b = 27.178 (3) Å c = 10.4681 (9) Å β = 99.966 (9)° V = 1080.6 (2) Å3 Z = 4 Cu Kα radiation μ = 0.92 mm−1 T = 120 K 0.57 × 0.15 × 0.05 mm

Data collection

Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.525, T max = 1 17777 measured reflections 1922 independent reflections 1638 reflections with I > 3σ(I) R int = 0.083

Refinement

R[F 2 > 3σ(F 2)] = 0.049 wR(F 2) = 0.129 S = 1.73 1922 reflections 314 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶) and COOT (Emsley et al., 2010 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811051129/bt5719sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811051129/bt5719Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811051129/bt5719Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536811051129/bt5719Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11NO4F(000) = 488
Mr = 233.2Dx = 1.433 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.5418 Å
Hall symbol: P 2ybCell parameters from 10329 reflections
a = 3.8564 (5) Åθ = 3.2–67.0°
b = 27.178 (3) ŵ = 0.92 mm1
c = 10.4681 (9) ÅT = 120 K
β = 99.966 (9)°Plate, yellow
V = 1080.6 (2) Å30.57 × 0.15 × 0.05 mm
Z = 4
Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector1922 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1638 reflections with I > 3σ(I)
mirrorRint = 0.083
Detector resolution: 10.3784 pixels mm-1θmax = 67.2°, θmin = 3.3°
Rotation method data acquisition using ω scansh = −4→4
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −32→32
Tmin = 0.525, Tmax = 1l = −12→12
17777 measured reflections
Refinement on F283 constraints
R[F2 > 2σ(F2)] = 0.049H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.129Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0025000002I2]
S = 1.73(Δ/σ)max = 0.005
1922 reflectionsΔρmax = 0.23 e Å3
314 parametersΔρmin = −0.23 e Å3
2 restraints
Experimental. CrysAlisPro (Agilent Technologies, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.The crystal studied was a non-merohedral twin with a minor twin domain of 24.7 (8)%. The overlaps of reflection between the twin domains were calculated by Jana2006 software using the twinning matrix and user- defined thresholds 0.23° for full overlap and 0.35° for full separation. For fully overlapped reflections, only a partial F2, corresponding to the twin volume fraction, were used in the refinement. Partially overlapped reflections were discarded from the refinement.
xyzUiso*/Ueq
O10.2649 (11)0.6335 (11)0.4130 (3)0.0326 (11)
O20.4957 (11)0.5846 (11)0.2764 (3)0.0345 (12)
O3−0.0165 (9)0.5839 (11)0.7938 (3)0.0283 (10)
O4−0.1254 (10)0.5233 (11)0.9851 (3)0.0308 (11)
O50.5833 (10)0.6646 (11)1.1452 (3)0.0320 (12)
O60.3472 (10)0.7133 (11)1.2816 (3)0.0332 (12)
O70.8594 (9)0.7170 (11)0.7627 (3)0.0283 (10)
O80.9534 (10)0.7793 (11)0.5719 (3)0.0342 (12)
N10.5464 (13)0.4678 (11)0.3684 (4)0.0343 (14)
N20.2837 (13)0.8295 (11)1.1899 (4)0.0321 (14)
C10.1528 (12)0.5171 (11)0.6702 (5)0.0236 (14)
C20.0453 (13)0.5351 (11)0.7835 (4)0.0236 (14)
C3−0.0160 (12)0.5019 (11)0.8808 (4)0.0245 (14)
C40.0298 (13)0.4524 (11)0.8650 (4)0.0255 (14)
C50.1332 (14)0.4346 (11)0.7525 (5)0.0288 (15)
C60.1917 (13)0.4663 (11)0.6560 (4)0.0274 (15)
C70.2100 (13)0.5534 (11)0.5742 (4)0.0250 (14)
C80.3328 (14)0.5483 (11)0.4605 (4)0.0243 (14)
C90.4445 (14)0.5034 (11)0.4110 (4)0.0277 (14)
C100.3636 (13)0.5926 (11)0.3818 (4)0.0257 (14)
C110.1964 (15)0.6094 (11)0.9025 (5)0.0332 (16)
C12−0.1818 (14)0.4919 (11)1.0900 (5)0.0334 (16)
C130.6801 (13)0.7825 (11)0.8888 (4)0.0234 (13)
C140.7893 (13)0.7657 (11)0.7738 (4)0.0247 (14)
C150.8358 (13)0.7994 (11)0.6769 (4)0.0283 (15)
C160.7721 (14)0.8488 (11)0.6932 (5)0.0289 (15)
C170.6679 (14)0.8651 (11)0.8067 (5)0.0286 (15)
C180.6238 (13)0.8332 (11)0.9037 (4)0.0273 (15)
C190.6324 (13)0.7453 (11)0.9840 (4)0.0229 (14)
C200.5098 (13)0.7499 (11)1.0980 (4)0.0250 (14)
C210.3867 (13)0.7943 (11)1.1482 (4)0.0249 (14)
C220.4825 (13)0.7055 (11)1.1777 (4)0.0255 (14)
C230.6528 (14)0.6915 (11)0.6539 (5)0.0311 (15)
C240.9902 (15)0.8114 (11)0.4668 (5)0.0357 (17)
H4−0.009490.4298840.9317650.0306*
H50.1640090.3998160.7423120.0346*
H60.2594320.4535040.5784060.0329*
H70.1514050.5865160.5942590.03*
H11a0.276460.6401830.8730920.0498*
H11b0.057230.6154350.9685290.0498*
H11c0.3957510.5894490.9373030.0498*
H12a−0.2771460.5108251.1531050.0501*
H12b−0.3439340.4662121.0570650.0501*
H12c0.0381470.477571.1297840.0501*
H160.7998550.8719380.6263280.0347*
H170.625840.8995640.8172530.0344*
H180.5546050.8453650.9816460.0327*
H190.6970520.7125240.9634760.0275*
H23a0.6683170.6566250.6689730.0466*
H23b0.4113610.701660.6446080.0466*
H23c0.7417020.6991780.5761180.0466*
H24a1.0671130.7928050.3988810.0535*
H24b0.7675560.8265190.4341140.0535*
H24c1.1607340.8364080.4968160.0535*
H6o0.315 (19)0.6834 (14)1.301 (7)0.0498*
H2o0.50 (2)0.6115 (17)0.235 (6)0.0517*
U11U22U33U12U13U23
O10.051 (2)0.0260 (17)0.0237 (16)−0.0015 (15)0.0152 (16)0.0005 (13)
O20.053 (2)0.0316 (19)0.0222 (16)−0.0003 (18)0.0166 (16)0.0036 (14)
O30.039 (2)0.0282 (17)0.0183 (14)0.0052 (15)0.0074 (14)0.0006 (13)
O40.042 (2)0.0356 (18)0.0183 (15)0.0008 (16)0.0162 (15)0.0033 (13)
O50.048 (2)0.0256 (18)0.0249 (18)0.0029 (15)0.0118 (16)0.0038 (13)
O60.047 (2)0.0329 (19)0.0238 (16)0.0009 (17)0.0181 (16)0.0038 (14)
O70.037 (2)0.0304 (18)0.0177 (14)0.0057 (14)0.0058 (14)−0.0018 (13)
O80.046 (2)0.042 (2)0.0183 (16)0.0056 (18)0.0151 (16)0.0045 (14)
N10.046 (3)0.036 (2)0.0238 (19)0.000 (2)0.0145 (19)−0.0008 (17)
N20.041 (3)0.032 (2)0.026 (2)−0.0008 (19)0.0129 (19)−0.0004 (17)
C10.022 (2)0.029 (2)0.021 (2)0.0003 (19)0.0066 (18)0.0038 (18)
C20.022 (2)0.028 (2)0.021 (2)0.0016 (18)0.0043 (19)0.0002 (18)
C30.023 (2)0.036 (2)0.017 (2)0.0012 (19)0.0094 (18)0.0015 (19)
C40.026 (2)0.031 (2)0.020 (2)−0.0031 (19)0.0053 (19)0.0032 (17)
C50.035 (3)0.029 (2)0.023 (2)−0.002 (2)0.008 (2)0.0023 (18)
C60.032 (3)0.030 (2)0.022 (2)−0.001 (2)0.009 (2)−0.0003 (19)
C70.028 (3)0.028 (2)0.020 (2)−0.0008 (19)0.0069 (19)0.0026 (18)
C80.028 (3)0.027 (2)0.018 (2)−0.0036 (19)0.0045 (19)−0.0008 (17)
C90.035 (3)0.028 (2)0.020 (2)−0.004 (2)0.007 (2)0.0008 (18)
C100.030 (3)0.030 (3)0.018 (2)−0.0027 (19)0.0073 (19)0.0007 (18)
C110.040 (3)0.034 (3)0.027 (2)0.001 (2)0.010 (2)−0.0020 (19)
C120.037 (3)0.045 (3)0.020 (2)0.003 (2)0.012 (2)0.008 (2)
C130.026 (3)0.028 (2)0.0164 (19)−0.0014 (19)0.0057 (19)0.0029 (17)
C140.028 (3)0.028 (2)0.019 (2)0.002 (2)0.0063 (19)0.0017 (18)
C150.029 (3)0.037 (3)0.020 (2)−0.002 (2)0.008 (2)0.001 (2)
C160.032 (3)0.033 (3)0.023 (2)−0.002 (2)0.007 (2)0.0092 (18)
C170.033 (3)0.026 (2)0.028 (2)−0.002 (2)0.008 (2)0.0022 (19)
C180.032 (3)0.030 (2)0.020 (2)0.000 (2)0.005 (2)−0.0018 (18)
C190.025 (3)0.025 (2)0.019 (2)−0.0012 (19)0.0045 (19)0.0013 (18)
C200.026 (2)0.027 (2)0.022 (2)−0.0017 (19)0.005 (2)0.0033 (18)
C210.031 (3)0.027 (2)0.0177 (19)−0.0022 (19)0.0084 (19)0.0035 (17)
C220.030 (3)0.026 (2)0.022 (2)−0.0027 (19)0.006 (2)0.0013 (18)
C230.035 (3)0.032 (3)0.026 (2)−0.002 (2)0.005 (2)−0.0026 (19)
C240.039 (3)0.049 (3)0.024 (2)−0.002 (3)0.016 (2)0.007 (2)
O1—C101.24 (4)C8—C91.42 (4)
O2—C101.311 (9)C8—C101.48 (3)
O2—H2o0.85 (6)C11—H11a0.96
O3—C21.35 (4)C11—H11b0.96
O3—C111.46 (2)C11—H11c0.96
O4—C31.367 (18)C12—H12a0.96
O4—C121.44 (2)C12—H12b0.96
O5—C221.24 (4)C12—H12c0.96
O6—C221.303 (9)C13—C141.418 (15)
O6—H6o0.85 (5)C13—C181.41 (4)
O7—C141.36 (4)C13—C191.45 (3)
O7—C231.45 (2)C14—C151.40 (3)
O8—C151.373 (17)C15—C161.38 (4)
O8—C241.43 (3)C16—C171.391 (15)
N1—C91.16 (3)C16—H160.96
N2—C211.15 (3)C17—C181.37 (3)
C1—C21.411 (16)C17—H170.96
C1—C61.40 (4)C18—H180.96
C1—C71.45 (3)C19—C201.364 (8)
C2—C31.41 (3)C19—H190.96
C3—C41.37 (4)C20—C211.43 (3)
C4—C51.394 (16)C20—C221.48 (3)
C4—H40.96C23—H23a0.96
C5—C61.38 (3)C23—H23b0.96
C5—H50.96C23—H23c0.96
C6—H60.96C24—H24a0.96
C7—C81.362 (8)C24—H24b0.96
C7—H70.96C24—H24c0.96
C10—O2—H2o109 (5)H12a—C12—H12b109.4706
C2—O3—C11116.4 (14)H12a—C12—H12c109.4709
C3—O4—C12118 (2)H12b—C12—H12c109.4715
C22—O6—H6o98 (5)C14—C13—C18118.8 (17)
C14—O7—C23116.3 (14)C14—C13—C19117 (2)
C15—O8—C24118 (2)C18—C13—C19124.4 (11)
C2—C1—C6119.1 (17)O7—C14—C13118.5 (17)
C2—C1—C7117 (2)O7—C14—C15121.5 (12)
C6—C1—C7124.4 (12)C13—C14—C15120 (2)
O3—C2—C1119.3 (17)O8—C15—C14115 (2)
O3—C2—C3121.0 (12)O8—C15—C16125.2 (18)
C1—C2—C3120 (2)C14—C15—C16119.9 (12)
O4—C3—C2115 (2)C15—C16—C17119.9 (18)
O4—C3—C4125.3 (17)C15—C16—H16120.0398
C2—C3—C4120.0 (12)C17—C16—H16120.0393
C3—C4—C5120.3 (18)C16—C17—C18122 (3)
C3—C4—H4119.845C16—C17—H17119.1935
C5—C4—H4119.8442C18—C17—H17119.193
C4—C5—C6121 (3)C13—C18—C17119.8 (13)
C4—C5—H5119.6762C13—C18—H18120.1038
C6—C5—H5119.6755C17—C18—H18120.1024
C1—C6—C5120.4 (13)C13—C19—C20130 (2)
C1—C6—H6119.8163C13—C19—H19115.0573
C5—C6—H6119.8174C20—C19—H19115.0579
C1—C7—C8131 (2)C19—C20—C21126 (2)
C1—C7—H7114.6249C19—C20—C22119 (2)
C8—C7—H7114.6246C21—C20—C22114.9 (9)
C7—C8—C9125 (2)N2—C21—C20178.7 (18)
C7—C8—C10119 (2)O5—C22—O6124 (2)
C9—C8—C10116.0 (9)O5—C22—C20121.2 (9)
N1—C9—C8177.1 (17)O6—C22—C20115 (2)
O1—C10—O2124 (2)O7—C23—H23a109.4707
O1—C10—C8121.9 (9)O7—C23—H23b109.4723
O2—C10—C8115 (2)O7—C23—H23c109.472
O3—C11—H11a109.4714H23a—C23—H23b109.4696
O3—C11—H11b109.4709H23a—C23—H23c109.4705
O3—C11—H11c109.4705H23b—C23—H23c109.4722
H11a—C11—H11b109.4718O8—C24—H24a109.4715
H11a—C11—H11c109.4715O8—C24—H24b109.4709
H11b—C11—H11c109.4713O8—C24—H24c109.4717
O4—C12—H12a109.471H24a—C24—H24b109.4707
O4—C12—H12b109.4717H24a—C24—H24c109.4706
O4—C12—H12c109.4716H24b—C24—H24c109.4718
C1—C2—O3—C11−120.5 (7)C13—C14—O7—C23121.0 (7)
C2—C3—O4—C12−178.0 (5)C14—C15—O8—C24177.1 (6)
D—H···AD—HH···AD···AD—H···A
O6—H6o···O1i0.85 (5)1.82 (6)2.62 (3)154 (6)
O2—H2o···O5ii0.85 (6)1.79 (6)2.63 (3)169 (8)
C11—H11c···O4iii0.962.563.50 (3)167.
C23—H23a···O3iii0.962.563.42 (4)149.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6o⋯O1i0.85 (5)1.82 (6)2.62 (3)154 (6)
O2—H2o⋯O5ii0.85 (6)1.79 (6)2.63 (3)169 (8)
C11—H11c⋯O4iii0.962.563.50 (3)167
C23—H23a⋯O3iii0.962.563.42 (4)149

Symmetry codes: (i) ; (ii) ; (iii) .

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