Literature DB >> 22199967

(2R,3R)-1-(4-Chloro-phen-yl)-2-[(S)-2-nitro-1-phenyl-eth-yl]-3-phenyl-pentan-1-one.

De-Long Duo1, Cheng-Yan Ni, Qing-Song Wen.   

Abstract

The title compound, C(25)H(24)ClNO(3), has three contiguous chiral centres. The absolute structure was determined by anomalous dispersion. The chloro-benzene ring is inclined to the two phenyl rings by 14.98 (9) and 59.05 (9)°. The two phenyl rings are inclined to one another by 49.51 (10)°. In the crystal, neighbouring mol-ecules are linked via C-H⋯O hydrogen bonds, forming chains propagating along [010]. There is also a C-H⋯π inter-action present that leads to the formation of a three-dimensional network.

Entities:  

Year:  2011        PMID: 22199967      PMCID: PMC3239119          DOI: 10.1107/S1600536811050306

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Xu et al. (2007 ▶). For the role of pyrrolidine motifs as organo-catalysts in asymmetric catalysis, see: Taylor & Jacobsen (2006 ▶) and for their role in bioactive mol­ecules, see: Kawasaki et al. (2005 ▶).

Experimental

Crystal data

C25H24ClNO3 M = 421.90 Orthorhombic, a = 8.4700 (1) Å b = 13.1515 (2) Å c = 20.7060 (2) Å V = 2306.51 (5) Å3 Z = 4 Cu Kα radiation μ = 1.66 mm−1 T = 293 K 0.42 × 0.36 × 0.30 mm

Data collection

Gemini S Ultra Oxford Diffraction diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.542, T max = 0.635 22729 measured reflections 4292 independent reflections 4173 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.099 S = 1.04 4292 reflections 272 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1824 Friedel pairs Flack parameter: −0.010 (13) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811050306/su2340sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050306/su2340Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050306/su2340Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H24ClNO3F(000) = 888
Mr = 421.90Dx = 1.215 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 16354 reflections
a = 8.4700 (1) Åθ = 3.4–69.8°
b = 13.1515 (2) ŵ = 1.66 mm1
c = 20.7060 (2) ÅT = 293 K
V = 2306.51 (5) Å3Block, colourless
Z = 40.42 × 0.36 × 0.30 mm
Gemini S Ultra Oxford Diffraction diffractometer4292 independent reflections
Radiation source: fine-focus sealed tube4173 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 15.9149 pixels mm-1θmax = 69.9°, θmin = 4.0°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −15→16
Tmin = 0.542, Tmax = 0.635l = −21→25
22729 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0641P)2 + 0.1848P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4292 reflectionsΔρmax = 0.14 e Å3
272 parametersΔρmin = −0.25 e Å3
0 restraintsAbsolute structure: Flack (1983), 1824 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.010 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.58917 (6)0.37368 (4)0.50249 (2)0.08473 (17)
O10.50133 (14)0.00173 (10)0.28825 (7)0.0700 (3)
O20.7782 (3)−0.30696 (14)0.25735 (12)0.1277 (8)
O30.9069 (3)−0.23945 (18)0.18103 (18)0.1769 (14)
N10.8118 (2)−0.23648 (13)0.22259 (12)0.0826 (5)
C10.5978 (2)0.28418 (13)0.44074 (8)0.0595 (4)
C20.46287 (19)0.23354 (13)0.42310 (7)0.0565 (4)
H20.36730.24820.44310.068*
C30.47066 (18)0.16045 (12)0.37513 (7)0.0509 (3)
H30.38010.12510.36340.061*
C40.61302 (18)0.13951 (11)0.34438 (7)0.0495 (3)
C50.7473 (2)0.19166 (15)0.36286 (9)0.0646 (4)
H50.84300.17780.34270.078*
C60.7404 (2)0.26467 (16)0.41126 (9)0.0697 (5)
H60.83080.29990.42360.084*
C70.61293 (18)0.05938 (12)0.29275 (7)0.0519 (3)
C80.74862 (17)0.05223 (12)0.24430 (7)0.0499 (3)
H80.82710.10370.25610.060*
C90.68287 (19)0.08030 (12)0.17641 (8)0.0544 (3)
H90.59120.03680.16810.065*
C100.80251 (19)0.06096 (12)0.12331 (7)0.0528 (3)
C110.7672 (2)−0.00341 (15)0.07273 (8)0.0664 (4)
H110.6694−0.03550.07200.080*
C120.8725 (3)−0.02151 (18)0.02330 (10)0.0846 (6)
H120.8454−0.0651−0.01030.102*
C131.0170 (3)0.0248 (2)0.02388 (11)0.0923 (7)
H131.08930.0123−0.00900.111*
C141.0545 (3)0.0903 (2)0.07361 (12)0.0973 (7)
H141.15230.12240.07400.117*
C150.9477 (2)0.10866 (18)0.12305 (10)0.0763 (5)
H150.97400.15330.15620.092*
C160.6259 (3)0.19137 (16)0.17528 (9)0.0745 (5)
H16A0.55160.20170.21040.089*
H16B0.71540.23590.18260.089*
C170.5474 (3)0.2207 (2)0.11228 (12)0.0983 (7)
H17A0.45870.17690.10460.148*
H17B0.62180.21390.07760.148*
H17C0.51190.28990.11470.148*
C180.83087 (17)−0.05335 (12)0.24718 (7)0.0512 (3)
H180.9132−0.05220.21390.061*
C190.91484 (19)−0.07057 (11)0.31084 (7)0.0529 (3)
C201.0760 (2)−0.05423 (14)0.31501 (9)0.0652 (4)
H201.1310−0.03160.27890.078*
C211.1568 (3)−0.07107 (16)0.37241 (12)0.0809 (6)
H211.2651−0.05950.37430.097*
C221.0794 (3)−0.10408 (16)0.42545 (10)0.0813 (6)
H221.1345−0.11660.46350.098*
C230.9185 (3)−0.11912 (17)0.42302 (9)0.0825 (6)
H230.8646−0.14060.45970.099*
C240.8368 (2)−0.10225 (17)0.36589 (9)0.0702 (5)
H240.7282−0.11240.36470.084*
C250.7198 (2)−0.14079 (12)0.22928 (9)0.0595 (4)
H25A0.6401−0.14890.26260.071*
H25B0.6667−0.12550.18890.071*
U11U22U33U12U13U23
Cl10.0818 (3)0.0920 (3)0.0804 (3)0.0158 (3)−0.0070 (2)−0.0388 (2)
O10.0573 (6)0.0679 (7)0.0848 (8)−0.0145 (6)0.0197 (6)−0.0212 (6)
O20.173 (2)0.0687 (10)0.1411 (17)0.0274 (12)−0.0380 (16)0.0015 (11)
O30.1117 (16)0.1051 (15)0.314 (4)0.0056 (12)0.093 (2)−0.073 (2)
N10.0698 (10)0.0618 (10)0.1162 (14)0.0089 (8)−0.0152 (10)−0.0261 (10)
C10.0637 (9)0.0612 (9)0.0537 (8)0.0092 (8)−0.0010 (7)−0.0099 (7)
C20.0540 (8)0.0620 (8)0.0536 (8)0.0105 (7)0.0070 (6)−0.0017 (7)
C30.0480 (7)0.0555 (8)0.0493 (7)0.0025 (6)0.0041 (6)0.0031 (6)
C40.0502 (7)0.0518 (7)0.0465 (7)0.0006 (6)0.0057 (6)−0.0005 (6)
C50.0518 (8)0.0776 (11)0.0645 (9)−0.0060 (8)0.0100 (7)−0.0164 (8)
C60.0586 (9)0.0806 (12)0.0698 (10)−0.0073 (9)0.0011 (8)−0.0215 (9)
C70.0490 (7)0.0529 (7)0.0539 (7)−0.0023 (6)0.0069 (6)−0.0027 (6)
C80.0467 (7)0.0538 (7)0.0493 (7)−0.0039 (6)0.0071 (6)−0.0063 (6)
C90.0505 (7)0.0588 (8)0.0540 (8)0.0016 (6)0.0059 (6)−0.0044 (7)
C100.0554 (8)0.0547 (8)0.0481 (7)0.0027 (7)0.0048 (6)−0.0021 (6)
C110.0731 (10)0.0700 (10)0.0561 (9)−0.0023 (9)−0.0004 (8)−0.0106 (8)
C120.1079 (17)0.0870 (13)0.0590 (10)0.0122 (12)0.0094 (11)−0.0191 (9)
C130.0968 (16)0.1098 (17)0.0703 (12)0.0169 (13)0.0332 (12)−0.0050 (12)
C140.0749 (13)0.129 (2)0.0881 (14)−0.0200 (13)0.0292 (11)−0.0019 (14)
C150.0699 (10)0.0919 (14)0.0670 (10)−0.0222 (10)0.0142 (9)−0.0140 (10)
C160.0882 (13)0.0710 (11)0.0642 (10)0.0241 (10)0.0141 (9)0.0008 (8)
C170.1010 (17)0.1026 (17)0.0914 (15)0.0363 (14)−0.0009 (13)0.0153 (13)
C180.0470 (7)0.0555 (8)0.0511 (7)−0.0004 (6)0.0059 (6)−0.0062 (6)
C190.0539 (8)0.0496 (7)0.0553 (8)−0.0017 (6)0.0004 (6)−0.0061 (6)
C200.0575 (9)0.0636 (9)0.0745 (10)−0.0104 (8)−0.0033 (8)0.0006 (8)
C210.0746 (12)0.0727 (12)0.0954 (15)−0.0100 (10)−0.0249 (11)−0.0021 (11)
C220.1026 (15)0.0691 (11)0.0723 (11)0.0028 (11)−0.0278 (11)−0.0100 (9)
C230.1092 (16)0.0836 (13)0.0548 (9)0.0021 (13)0.0032 (10)0.0032 (9)
C240.0649 (10)0.0858 (12)0.0597 (9)−0.0035 (9)0.0063 (8)0.0015 (9)
C250.0562 (8)0.0541 (8)0.0680 (9)0.0028 (7)−0.0036 (7)−0.0117 (7)
Cl1—C11.7393 (15)C12—H120.9300
O1—C71.2153 (19)C13—C141.379 (4)
O2—N11.208 (3)C13—H130.9300
O3—N11.180 (3)C14—C151.387 (3)
N1—C251.487 (2)C14—H140.9300
C1—C21.372 (3)C15—H150.9300
C1—C61.378 (3)C16—C171.514 (3)
C2—C31.384 (2)C16—H16A0.9700
C2—H20.9300C16—H16B0.9700
C3—C41.391 (2)C17—H17A0.9600
C3—H30.9300C17—H17B0.9600
C4—C51.382 (2)C17—H17C0.9600
C4—C71.501 (2)C18—C191.515 (2)
C5—C61.389 (3)C18—C251.531 (2)
C5—H50.9300C18—H180.9800
C6—H60.9300C19—C241.382 (2)
C7—C81.5285 (19)C19—C201.385 (2)
C8—C181.555 (2)C20—C211.389 (3)
C8—C91.556 (2)C20—H200.9300
C8—H80.9800C21—C221.351 (3)
C9—C101.517 (2)C21—H210.9300
C9—C161.539 (2)C22—C231.378 (4)
C9—H90.9800C22—H220.9300
C10—C111.379 (2)C23—C241.388 (3)
C10—C151.381 (2)C23—H230.9300
C11—C121.378 (3)C24—H240.9300
C11—H110.9300C25—H25A0.9700
C12—C131.367 (4)C25—H25B0.9700
O3—N1—O2124.8 (2)C13—C14—C15120.6 (2)
O3—N1—C25117.0 (2)C13—C14—H14119.7
O2—N1—C25118.1 (2)C15—C14—H14119.7
C2—C1—C6121.45 (14)C10—C15—C14120.29 (19)
C2—C1—Cl1119.29 (12)C10—C15—H15119.9
C6—C1—Cl1119.25 (14)C14—C15—H15119.9
C1—C2—C3119.24 (14)C17—C16—C9113.12 (18)
C1—C2—H2120.4C17—C16—H16A109.0
C3—C2—H2120.4C9—C16—H16A109.0
C2—C3—C4120.49 (14)C17—C16—H16B109.0
C2—C3—H3119.8C9—C16—H16B109.0
C4—C3—H3119.8H16A—C16—H16B107.8
C5—C4—C3119.23 (13)C16—C17—H17A109.5
C5—C4—C7123.09 (13)C16—C17—H17B109.5
C3—C4—C7117.67 (13)H17A—C17—H17B109.5
C4—C5—C6120.54 (16)C16—C17—H17C109.5
C4—C5—H5119.7H17A—C17—H17C109.5
C6—C5—H5119.7H17B—C17—H17C109.5
C1—C6—C5119.03 (17)C19—C18—C25112.75 (14)
C1—C6—H6120.5C19—C18—C8112.17 (12)
C5—C6—H6120.5C25—C18—C8112.71 (13)
O1—C7—C4119.54 (13)C19—C18—H18106.2
O1—C7—C8119.74 (13)C25—C18—H18106.2
C4—C7—C8120.68 (13)C8—C18—H18106.2
C7—C8—C18111.51 (12)C24—C19—C20117.82 (16)
C7—C8—C9108.01 (12)C24—C19—C18122.57 (15)
C18—C8—C9114.01 (12)C20—C19—C18119.61 (15)
C7—C8—H8107.7C19—C20—C21120.96 (19)
C18—C8—H8107.7C19—C20—H20119.5
C9—C8—H8107.7C21—C20—H20119.5
C10—C9—C16110.97 (14)C22—C21—C20120.5 (2)
C10—C9—C8112.08 (12)C22—C21—H21119.7
C16—C9—C8110.56 (14)C20—C21—H21119.7
C10—C9—H9107.7C21—C22—C23119.76 (19)
C16—C9—H9107.7C21—C22—H22120.1
C8—C9—H9107.7C23—C22—H22120.1
C11—C10—C15117.99 (16)C22—C23—C24120.1 (2)
C11—C10—C9120.55 (15)C22—C23—H23120.0
C15—C10—C9121.44 (15)C24—C23—H23120.0
C12—C11—C10121.95 (19)C19—C24—C23120.83 (19)
C12—C11—H11119.0C19—C24—H24119.6
C10—C11—H11119.0C23—C24—H24119.6
C13—C12—C11119.7 (2)N1—C25—C18109.64 (14)
C13—C12—H12120.1N1—C25—H25A109.7
C11—C12—H12120.1C18—C25—H25A109.7
C12—C13—C14119.41 (19)N1—C25—H25B109.7
C12—C13—H13120.3C18—C25—H25B109.7
C14—C13—H13120.3H25A—C25—H25B108.2
C6—C1—C2—C30.7 (3)C10—C11—C12—C130.3 (4)
Cl1—C1—C2—C3−178.32 (12)C11—C12—C13—C14−0.9 (4)
C1—C2—C3—C4−1.0 (2)C12—C13—C14—C150.5 (4)
C2—C3—C4—C50.8 (2)C11—C10—C15—C14−1.0 (3)
C2—C3—C4—C7−179.95 (14)C9—C10—C15—C14−179.4 (2)
C3—C4—C5—C6−0.4 (3)C13—C14—C15—C100.4 (4)
C7—C4—C5—C6−179.60 (17)C10—C9—C16—C1760.0 (2)
C2—C1—C6—C5−0.3 (3)C8—C9—C16—C17−174.97 (18)
Cl1—C1—C6—C5178.72 (16)C7—C8—C18—C19−66.22 (16)
C4—C5—C6—C10.2 (3)C9—C8—C18—C19171.13 (12)
C5—C4—C7—O1164.28 (18)C7—C8—C18—C2562.33 (17)
C3—C4—C7—O1−14.9 (2)C9—C8—C18—C25−60.31 (17)
C5—C4—C7—C8−18.1 (2)C25—C18—C19—C24−47.1 (2)
C3—C4—C7—C8162.74 (14)C8—C18—C19—C2481.41 (19)
O1—C7—C8—C18−61.3 (2)C25—C18—C19—C20132.96 (16)
C4—C7—C8—C18121.03 (15)C8—C18—C19—C20−98.51 (16)
O1—C7—C8—C964.69 (19)C24—C19—C20—C211.2 (3)
C4—C7—C8—C9−112.95 (15)C18—C19—C20—C21−178.86 (17)
C7—C8—C9—C10−171.81 (13)C19—C20—C21—C220.1 (3)
C18—C8—C9—C10−47.28 (18)C20—C21—C22—C23−1.4 (3)
C7—C8—C9—C1663.81 (17)C21—C22—C23—C241.2 (3)
C18—C8—C9—C16−171.65 (14)C20—C19—C24—C23−1.4 (3)
C16—C9—C10—C11−113.53 (19)C18—C19—C24—C23178.72 (17)
C8—C9—C10—C11122.32 (17)C22—C23—C24—C190.2 (3)
C16—C9—C10—C1564.8 (2)O3—N1—C25—C18−63.7 (3)
C8—C9—C10—C15−59.3 (2)O2—N1—C25—C18120.2 (2)
C15—C10—C11—C120.7 (3)C19—C18—C25—N1−60.96 (19)
C9—C10—C11—C12179.12 (18)C8—C18—C25—N1170.79 (16)
CgA is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
C5—H5···O3i0.932.433.198 (5)140
C12—H12···CgAii0.932.823.691 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

CgA is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O3i0.932.433.198 (5)140
C12—H12⋯CgAii0.932.823.691 (4)157

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Total synthesis of (-)-kaitocephalin.

Authors:  Masanori Kawasaki; Tetsuro Shinada; Makoto Hamada; Yasufumi Ohfune
Journal:  Org Lett       Date:  2005-09-15       Impact factor: 6.005

Review 3.  Asymmetric catalysis by chiral hydrogen-bond donors.

Authors:  Mark S Taylor; Eric N Jacobsen
Journal:  Angew Chem Int Ed Engl       Date:  2006-02-27       Impact factor: 15.336

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.