Literature DB >> 22199964

tert-Butyl 6-oxo-2,7-diaza-spiro[4.4]nonane-2-carboxyl-ate.

Jie Yang1.   

Abstract

In the title mol-ecule, C(12)H(20)N(2)O(3), both five-membered rings are in envelope conformations. In the crystal, N-H⋯O hydrogen bonds link the mol-ecules into chains along [010].

Entities:  

Year:  2011        PMID: 22199964      PMCID: PMC3239116          DOI: 10.1107/S160053681105046X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of substituted pyrrolidines, see: Domagala et al. (1993 ▶); Pedder et al. (1976 ▶); Blanco & Sardina (1994 ▶); Husinec & Savic (2005 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H20N2O3 M = 240.30 Monoclinic, a = 10.495 (5) Å b = 6.283 (3) Å c = 19.247 (10) Å β = 97.029 (8)° V = 1259.7 (11) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.21 × 0.15 × 0.06 mm

Data collection

Rigaku Saturn 724+ diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2007 ▶) T min = 0.981, T max = 0.995 3265 measured reflections 1557 independent reflections 1452 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.105 S = 1.09 1557 reflections 157 parameters 1 restraint H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681105046X/lh5363sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105046X/lh5363Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H20N2O3F(000) = 520
Mr = 240.30Dx = 1.267 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 2422 reflections
a = 10.495 (5) Åθ = 1.1–27.5°
b = 6.283 (3) ŵ = 0.09 mm1
c = 19.247 (10) ÅT = 173 K
β = 97.029 (8)°Platelet, colorless
V = 1259.7 (11) Å30.21 × 0.15 × 0.06 mm
Z = 4
Rigaku Saturn 724+ diffractometer1557 independent reflections
Radiation source: rotating anode1452 reflections with I > 2σ(I)
ConfocalRint = 0.039
ω scans at fixed χ = 45°θmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007)h = −13→7
Tmin = 0.981, Tmax = 0.995k = −8→8
3265 measured reflectionsl = −23→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.032P)2 + 0.9713P] where P = (Fo2 + 2Fc2)/3
1557 reflections(Δ/σ)max < 0.001
157 parametersΔρmax = 0.23 e Å3
1 restraintΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Absolute configuration is unknown, there being no firm chemical evidence for its assignment to hand and it having not been established by anomalous dispersion effects in diffraction measurements on the crystal. An arbitrary choice of enantiomer has been made.
xyzUiso*/Ueq
O10.2715 (2)0.4600 (3)0.43850 (10)0.0313 (5)
O20.33362 (17)0.2042 (3)0.18571 (9)0.0289 (5)
O30.55006 (19)0.1382 (4)0.19625 (10)0.0332 (5)
N10.3406 (2)0.8081 (4)0.44345 (11)0.0255 (5)
H10.30280.84740.47980.031*
N20.4618 (2)0.3546 (4)0.27139 (12)0.0275 (5)
C10.3315 (3)0.6117 (5)0.41741 (13)0.0219 (6)
C20.4181 (3)0.9527 (5)0.40704 (14)0.0279 (6)
H2B0.50370.97510.43390.033*
H2A0.37501.09200.39840.033*
C30.4286 (3)0.8347 (5)0.33812 (13)0.0234 (6)
H3B0.51340.85960.32200.028*
H3A0.36050.88130.30110.028*
C40.4118 (3)0.5993 (5)0.35651 (13)0.0209 (5)
C50.5419 (3)0.4915 (5)0.38093 (13)0.0241 (6)
H5B0.60510.59630.40270.029*
H5A0.53170.37660.41500.029*
C60.5835 (3)0.4018 (5)0.31360 (15)0.0303 (7)
H6B0.63360.50780.29020.036*
H6A0.63570.27140.32300.036*
C70.3515 (2)0.4573 (5)0.29695 (13)0.0233 (6)
H7B0.29360.35050.31430.028*
H7A0.30240.54280.25960.028*
C80.4568 (2)0.2247 (5)0.21527 (13)0.0244 (6)
C90.3028 (3)0.0912 (5)0.11865 (14)0.0290 (7)
C100.3776 (3)0.1875 (7)0.06389 (15)0.0461 (9)
H10A0.34440.13210.01760.069*
H10C0.46860.15010.07450.069*
H10B0.36830.34270.06410.069*
C110.3283 (3)−0.1464 (6)0.12960 (17)0.0381 (8)
H11B0.2717−0.20310.16200.057*
H11C0.4180−0.16800.14920.057*
H11A0.3117−0.22050.08460.057*
C120.1607 (3)0.1350 (7)0.10196 (17)0.0419 (8)
H12A0.12810.06480.05790.063*
H12C0.14660.28880.09740.063*
H12B0.11540.07990.13980.063*
U11U22U33U12U13U23
O10.0348 (12)0.0317 (11)0.0293 (10)−0.0073 (10)0.0115 (8)0.0027 (10)
O20.0228 (10)0.0378 (11)0.0253 (9)0.0021 (10)0.0002 (7)−0.0106 (10)
O30.0261 (11)0.0410 (13)0.0335 (10)0.0050 (10)0.0074 (8)−0.0098 (10)
N10.0263 (12)0.0276 (13)0.0234 (11)0.0030 (11)0.0066 (9)−0.0023 (11)
N20.0190 (11)0.0345 (13)0.0284 (11)0.0033 (11)0.0004 (9)−0.0091 (11)
C10.0200 (13)0.0256 (13)0.0200 (11)−0.0001 (12)0.0015 (10)0.0016 (11)
C20.0280 (15)0.0235 (13)0.0322 (14)0.0000 (13)0.0033 (11)0.0014 (13)
C30.0197 (13)0.0265 (14)0.0247 (12)0.0022 (12)0.0059 (10)0.0037 (12)
C40.0193 (12)0.0224 (13)0.0211 (11)0.0013 (12)0.0025 (10)0.0009 (11)
C50.0206 (13)0.0249 (14)0.0262 (13)−0.0010 (12)0.0001 (10)−0.0014 (12)
C60.0183 (13)0.0383 (18)0.0336 (14)0.0040 (13)0.0001 (11)−0.0076 (13)
C70.0181 (13)0.0271 (13)0.0252 (12)0.0021 (12)0.0053 (10)−0.0021 (12)
C80.0219 (13)0.0270 (14)0.0248 (13)0.0016 (12)0.0048 (10)−0.0003 (12)
C90.0309 (15)0.0351 (16)0.0212 (13)−0.0022 (14)0.0033 (11)−0.0045 (13)
C100.048 (2)0.062 (3)0.0283 (15)−0.009 (2)0.0058 (14)0.0031 (17)
C110.0388 (18)0.0359 (17)0.0394 (17)−0.0022 (16)0.0030 (14)−0.0081 (15)
C120.0337 (18)0.050 (2)0.0395 (17)0.0044 (17)−0.0073 (14)−0.0070 (17)
O1—C11.238 (3)C5—C61.525 (4)
O2—C81.353 (3)C5—H5B0.9900
O2—C91.474 (3)C5—H5A0.9900
O3—C81.214 (3)C6—H6B0.9900
N1—C11.331 (4)C6—H6A0.9900
N1—C21.454 (4)C7—H7B0.9900
N1—H10.8800C7—H7A0.9900
N2—C81.350 (3)C9—C121.511 (4)
N2—C61.458 (4)C9—C101.516 (4)
N2—C71.462 (3)C9—C111.526 (5)
C1—C41.527 (4)C10—H10A0.9800
C2—C31.535 (4)C10—H10C0.9800
C2—H2B0.9900C10—H10B0.9800
C2—H2A0.9900C11—H11B0.9800
C3—C41.536 (4)C11—H11C0.9800
C3—H3B0.9900C11—H11A0.9800
C3—H3A0.9900C12—H12A0.9800
C4—C71.527 (4)C12—H12C0.9800
C4—C51.545 (4)C12—H12B0.9800
C8—O2—C9120.7 (2)N2—C6—H6A111.1
C1—N1—C2114.6 (2)C5—C6—H6A111.1
C1—N1—H1122.7H6B—C6—H6A109.1
C2—N1—H1122.7N2—C7—C4103.8 (2)
C8—N2—C6121.0 (2)N2—C7—H7B111.0
C8—N2—C7125.5 (2)C4—C7—H7B111.0
C6—N2—C7113.5 (2)N2—C7—H7A111.0
O1—C1—N1127.3 (3)C4—C7—H7A111.0
O1—C1—C4124.3 (3)H7B—C7—H7A109.0
N1—C1—C4108.4 (2)O3—C8—N2123.9 (3)
N1—C2—C3102.6 (2)O3—C8—O2126.5 (3)
N1—C2—H2B111.2N2—C8—O2109.6 (2)
C3—C2—H2B111.2O2—C9—C12101.8 (2)
N1—C2—H2A111.2O2—C9—C10109.8 (3)
C3—C2—H2A111.2C12—C9—C10111.2 (3)
H2B—C2—H2A109.2O2—C9—C11109.5 (2)
C2—C3—C4104.1 (2)C12—C9—C11111.1 (3)
C2—C3—H3B110.9C10—C9—C11112.9 (3)
C4—C3—H3B110.9C9—C10—H10A109.5
C2—C3—H3A110.9C9—C10—H10C109.5
C4—C3—H3A110.9H10A—C10—H10C109.5
H3B—C3—H3A109.0C9—C10—H10B109.5
C1—C4—C7112.9 (2)H10A—C10—H10B109.5
C1—C4—C3102.6 (2)H10C—C10—H10B109.5
C7—C4—C3116.0 (2)C9—C11—H11B109.5
C1—C4—C5109.8 (2)C9—C11—H11C109.5
C7—C4—C5104.0 (2)H11B—C11—H11C109.5
C3—C4—C5111.7 (2)C9—C11—H11A109.5
C6—C5—C4103.8 (2)H11B—C11—H11A109.5
C6—C5—H5B111.0H11C—C11—H11A109.5
C4—C5—H5B111.0C9—C12—H12A109.5
C6—C5—H5A111.0C9—C12—H12C109.5
C4—C5—H5A111.0H12A—C12—H12C109.5
H5B—C5—H5A109.0C9—C12—H12B109.5
N2—C6—C5103.1 (2)H12A—C12—H12B109.5
N2—C6—H6B111.1H12C—C12—H12B109.5
C5—C6—H6B111.1
C2—N1—C1—O1−179.7 (3)C7—N2—C6—C515.7 (3)
C2—N1—C1—C41.7 (3)C4—C5—C6—N2−30.5 (3)
C1—N1—C2—C315.7 (3)C8—N2—C7—C4−175.1 (3)
N1—C2—C3—C4−25.8 (3)C6—N2—C7—C45.9 (3)
O1—C1—C4—C737.5 (4)C1—C4—C7—N2−143.8 (2)
N1—C1—C4—C7−143.8 (2)C3—C4—C7—N298.2 (3)
O1—C1—C4—C3163.1 (3)C5—C4—C7—N2−24.9 (3)
N1—C1—C4—C3−18.2 (3)C6—N2—C8—O30.5 (4)
O1—C1—C4—C5−78.0 (3)C7—N2—C8—O3−178.4 (3)
N1—C1—C4—C5100.7 (3)C6—N2—C8—O2179.2 (3)
C2—C3—C4—C126.7 (3)C7—N2—C8—O20.3 (4)
C2—C3—C4—C7150.2 (2)C9—O2—C8—O3−8.6 (4)
C2—C3—C4—C5−90.8 (2)C9—O2—C8—N2172.7 (2)
C1—C4—C5—C6155.7 (2)C8—O2—C9—C12−172.4 (3)
C7—C4—C5—C634.6 (3)C8—O2—C9—C10−54.6 (4)
C3—C4—C5—C6−91.2 (3)C8—O2—C9—C1169.9 (3)
C8—N2—C6—C5−163.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.881.972.848 (3)175.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.881.972.848 (3)175

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Quinolone antibacterials containing the new 7-[3-(1-aminoethyl)-1- pyrrolidinyl] side chain: the effects of the 1-aminoethyl moiety and its stereochemical configurations on potency and in vivo efficacy.

Authors:  J M Domagala; S E Hagen; T Joannides; J S Kiely; E Laborde; M C Schroeder; J A Sesnie; M A Shapiro; M J Suto; S Vanderroest
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  2 in total

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