Literature DB >> 22199956

4-[(2-Hy-droxy-naphthalen-1-yl)(morpholin-4-yl)meth-yl]benzonitrile.

Xin-Yuan Chen1, Min-Min Zhao, Xu Qian, Shao-Gang Hou.   

Abstract

The title compound, C(22)H(20)N(2)O(2), was synthesized via a multicomponent reaction using naphthalen-2-ol, morpholine and 4-formyl-benzonitrile. The dihedral angle between the naphthalene ring system and the benzene ring is 81.25 (10)°. The morpholine ring adopts a chair conformation. The mol-ecular conformation is stabilized by intra-molecular O-H⋯N and C-H⋯O hydrogen bonds. In the crystal, inter-molecular C-H⋯N hydrogen bonds link mol-ecules into helical chains running parallel to the c axis.

Entities:  

Year:  2011        PMID: 22199956      PMCID: PMC3239108          DOI: 10.1107/S160053681104997X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to multi-component reactions, see: Devi & Bhuyan (2004 ▶); Domling & Ugi (2000 ▶). Hulme & Gore (2003 ▶); Ugi (1962 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C22H20N2O2 M = 344.40 Trigonal, a = 18.294 (3) Å c = 28.738 (6) Å V = 8329 (4) Å3 Z = 18 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.20 × 0.15 × 0.10 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.910, T max = 1.000 24077 measured reflections 3326 independent reflections 1786 reflections with I > 2σ(I) R int = 0.138

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.210 S = 1.03 3326 reflections 235 parameters 7 restraints H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681104997X/rz2668sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104997X/rz2668Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681104997X/rz2668Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H20N2O2Dx = 1.236 Mg m3
Mr = 344.40Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3Cell parameters from 3326 reflections
Hall symbol: -R 3θ = 3.1–25.2°
a = 18.294 (3) ŵ = 0.08 mm1
c = 28.738 (6) ÅT = 298 K
V = 8329 (4) Å3Block, colourless
Z = 180.20 × 0.15 × 0.10 mm
F(000) = 3276
Rigaku Mercury2 diffractometer3326 independent reflections
Radiation source: fine-focus sealed tube1786 reflections with I > 2σ(I)
graphiteRint = 0.138
Detector resolution: 13.6612 pixels mm-1θmax = 25.2°, θmin = 3.1°
CCD profile fitting scansh = −21→21
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −21→21
Tmin = 0.910, Tmax = 1.000l = −34→34
24077 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.210H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0825P)2 + 7.1283P] where P = (Fo2 + 2Fc2)/3
3326 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.22 e Å3
7 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6590 (2)0.9543 (2)−0.01901 (11)0.0550 (9)
N10.58212 (15)0.86806 (15)0.04966 (8)0.0455 (7)
O10.51037 (19)0.90933 (18)−0.01526 (10)0.0841 (9)
H10.51810.89200.01080.126*
C20.5846 (3)0.9432 (2)−0.03881 (13)0.0713 (12)
N20.7870 (3)1.3181 (3)0.14213 (18)0.146 (2)
O20.48604 (18)0.71036 (17)0.09733 (11)0.0913 (10)
C30.5833 (5)0.9667 (3)−0.08470 (18)0.110 (2)
H3A0.53340.9598−0.09720.132*
C40.6527 (7)0.9991 (4)−0.11117 (19)0.140 (3)
H4A0.65041.0157−0.14140.168*
C50.7294 (5)1.0085 (3)−0.09428 (18)0.119 (2)
C60.8038 (6)1.0382 (4)−0.1215 (2)0.145 (3)
H6A0.80201.0527−0.15240.174*
C70.8752 (5)1.0465 (4)−0.1058 (3)0.160 (4)
H7A0.92231.0672−0.12500.192*
C80.8794 (4)1.0236 (3)−0.0596 (2)0.131 (2)
H8A0.92891.0275−0.04840.158*
C90.8103 (3)0.9956 (2)−0.03107 (17)0.0894 (15)
H9A0.81460.9826−0.00030.107*
C100.7325 (3)0.9858 (2)−0.04718 (13)0.0728 (12)
C110.66336 (19)0.93938 (19)0.03258 (10)0.0459 (8)
H11A0.70760.92490.03740.055*
C120.5716 (2)0.7879 (2)0.03122 (13)0.0606 (10)
H12A0.61840.78110.04130.073*
H12B0.57190.7894−0.00250.073*
C130.4897 (3)0.7141 (2)0.04806 (16)0.0834 (13)
H13A0.44280.71920.03630.100*
H13B0.48420.66210.03600.100*
C140.4948 (3)0.7858 (2)0.11521 (14)0.0771 (12)
H14A0.49250.78280.14890.092*
H14B0.44800.79220.10450.092*
C150.5765 (2)0.8617 (2)0.10044 (12)0.0584 (9)
H15A0.57980.91240.11320.070*
H15B0.62350.85720.11260.070*
C160.6885 (2)1.0214 (2)0.05850 (10)0.0478 (8)
C170.7626 (2)1.0606 (2)0.08376 (12)0.0621 (10)
H17A0.79541.03500.08630.075*
C180.7886 (2)1.1370 (3)0.10521 (13)0.0733 (12)
H18A0.83951.16330.12140.088*
C190.7396 (3)1.1747 (2)0.10287 (12)0.0651 (11)
C200.6641 (2)1.1355 (2)0.07818 (12)0.0626 (10)
H20A0.63021.16000.07670.075*
C210.6400 (2)1.0603 (2)0.05593 (11)0.0554 (9)
H21A0.59021.03490.03880.067*
C220.7657 (3)1.2544 (3)0.12509 (16)0.0976 (16)
U11U22U33U12U13U23
C10.086 (3)0.047 (2)0.036 (2)0.036 (2)0.0023 (19)−0.0008 (15)
N10.0493 (16)0.0456 (16)0.0418 (16)0.0238 (13)0.0012 (12)−0.0033 (12)
O10.090 (2)0.090 (2)0.084 (2)0.0538 (18)−0.0321 (17)−0.0075 (16)
C20.118 (4)0.054 (2)0.045 (2)0.045 (3)−0.022 (2)−0.0062 (18)
N20.126 (4)0.096 (3)0.153 (4)0.008 (3)0.030 (3)−0.067 (3)
O20.106 (2)0.0635 (19)0.092 (2)0.0338 (17)0.0362 (18)0.0195 (16)
C30.189 (6)0.092 (4)0.060 (3)0.077 (4)−0.045 (4)−0.004 (3)
C40.280 (10)0.078 (4)0.047 (4)0.078 (5)−0.024 (5)0.001 (3)
C50.231 (6)0.043 (2)0.049 (3)0.043 (3)0.054 (3)0.005 (2)
C60.250 (6)0.058 (3)0.066 (3)0.031 (4)0.070 (4)−0.002 (2)
C70.193 (7)0.068 (4)0.144 (7)0.008 (5)0.123 (6)−0.008 (4)
C80.129 (5)0.080 (3)0.154 (6)0.028 (3)0.087 (4)−0.007 (3)
C90.099 (4)0.064 (3)0.095 (3)0.034 (3)0.051 (3)0.004 (2)
C100.112 (4)0.041 (2)0.055 (3)0.031 (2)0.028 (2)−0.0009 (18)
C110.0470 (19)0.049 (2)0.044 (2)0.0261 (17)0.0012 (15)0.0000 (15)
C120.068 (2)0.052 (2)0.063 (2)0.0313 (19)0.0085 (19)0.0001 (17)
C130.086 (3)0.048 (2)0.098 (4)0.021 (2)0.013 (3)−0.004 (2)
C140.083 (3)0.068 (3)0.077 (3)0.036 (2)0.026 (2)0.010 (2)
C150.063 (2)0.063 (2)0.049 (2)0.032 (2)0.0085 (17)0.0072 (17)
C160.048 (2)0.053 (2)0.0362 (19)0.0210 (17)0.0011 (15)0.0025 (15)
C170.051 (2)0.073 (3)0.055 (2)0.025 (2)−0.0007 (17)−0.0086 (19)
C180.051 (2)0.083 (3)0.059 (3)0.014 (2)0.0010 (18)−0.020 (2)
C190.068 (3)0.053 (2)0.045 (2)0.009 (2)0.0174 (19)−0.0085 (17)
C200.074 (3)0.054 (2)0.059 (2)0.032 (2)0.002 (2)−0.0073 (18)
C210.065 (2)0.049 (2)0.052 (2)0.0287 (19)−0.0093 (17)−0.0094 (17)
C220.081 (3)0.073 (3)0.088 (3)0.000 (2)0.024 (2)−0.033 (3)
C1—C21.392 (5)C9—H9A0.9300
C1—C101.422 (5)C11—C161.526 (4)
C1—C111.517 (4)C11—H11A0.9800
N1—C151.464 (4)C12—C131.511 (5)
N1—C121.478 (4)C12—H12A0.9700
N1—C111.488 (4)C12—H12B0.9700
O1—C21.359 (5)C13—H13A0.9700
O1—H10.8517C13—H13B0.9700
C2—C31.391 (6)C14—C151.505 (5)
N2—C221.137 (5)C14—H14A0.9700
O2—C141.405 (4)C14—H14B0.9700
O2—C131.418 (5)C15—H15A0.9700
C3—C41.337 (9)C15—H15B0.9700
C3—H3A0.9300C16—C171.381 (4)
C4—C51.410 (9)C16—C211.389 (4)
C4—H4A0.9300C17—C181.377 (5)
C5—C61.423 (10)C17—H17A0.9300
C5—C101.425 (7)C18—C191.379 (5)
C6—C71.317 (10)C18—H18A0.9300
C6—H6A0.9300C19—C201.391 (5)
C7—C81.403 (10)C19—C221.437 (6)
C7—H7A0.9300C20—C211.374 (4)
C8—C91.373 (6)C20—H20A0.9300
C8—H8A0.9300C21—H21A0.9300
C9—C101.420 (6)
C2—C1—C10118.9 (4)N1—C12—H12A109.5
C2—C1—C11120.6 (3)C13—C12—H12A109.5
C10—C1—C11120.3 (3)N1—C12—H12B109.5
C15—N1—C12108.1 (3)C13—C12—H12B109.5
C15—N1—C11113.5 (2)H12A—C12—H12B108.1
C12—N1—C11109.2 (2)O2—C13—C12111.4 (3)
C2—O1—H1107.0O2—C13—H13A109.4
O1—C2—C3116.4 (5)C12—C13—H13A109.4
O1—C2—C1123.0 (3)O2—C13—H13B109.4
C3—C2—C1120.6 (5)C12—C13—H13B109.4
C14—O2—C13109.8 (3)H13A—C13—H13B108.0
C4—C3—C2121.1 (6)O2—C14—C15112.1 (3)
C4—C3—H3A119.4O2—C14—H14A109.2
C2—C3—H3A119.4C15—C14—H14A109.2
C3—C4—C5121.6 (5)O2—C14—H14B109.2
C3—C4—H4A119.2C15—C14—H14B109.2
C5—C4—H4A119.2H14A—C14—H14B107.9
C4—C5—C6124.1 (7)N1—C15—C14110.6 (3)
C4—C5—C10118.2 (6)N1—C15—H15A109.5
C6—C5—C10117.6 (8)C14—C15—H15A109.5
C7—C6—C5124.0 (8)N1—C15—H15B109.5
C7—C6—H6A118.0C14—C15—H15B109.5
C5—C6—H6A118.0H15A—C15—H15B108.1
C6—C7—C8119.3 (6)C17—C16—C21118.4 (3)
C6—C7—H7A120.3C17—C16—C11120.1 (3)
C8—C7—H7A120.3C21—C16—C11121.5 (3)
C9—C8—C7119.9 (7)C18—C17—C16120.9 (4)
C9—C8—H8A120.0C18—C17—H17A119.6
C7—C8—H8A120.0C16—C17—H17A119.6
C8—C9—C10121.9 (5)C17—C18—C19120.3 (3)
C8—C9—H9A119.0C17—C18—H18A119.8
C10—C9—H9A119.0C19—C18—H18A119.8
C9—C10—C1123.4 (4)C18—C19—C20119.5 (3)
C9—C10—C5117.2 (5)C18—C19—C22121.1 (4)
C1—C10—C5119.4 (5)C20—C19—C22119.4 (4)
N1—C11—C1111.2 (3)C21—C20—C19119.5 (4)
N1—C11—C16112.3 (2)C21—C20—H20A120.2
C1—C11—C16108.5 (2)C19—C20—H20A120.2
N1—C11—H11A108.3C20—C21—C16121.4 (3)
C1—C11—H11A108.3C20—C21—H21A119.3
C16—C11—H11A108.3C16—C21—H21A119.3
N1—C12—C13110.6 (3)N2—C22—C19179.0 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.851.822.601 (4)151.
C21—H21A···O10.932.543.300 (4)139
C7—H7A···N2i0.932.443.327 (9)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.851.822.601 (4)151
C21—H21A⋯O10.932.543.300 (4)139
C7—H7A⋯N2i0.932.443.327 (9)160

Symmetry code: (i) .

  3 in total

1.  Multicomponent Reactions with Isocyanides.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-09-15       Impact factor: 15.336

Review 2.  "Multi-component reactions : emerging chemistry in drug discovery" 'from xylocain to crixivan'.

Authors:  Christopher Hulme; Vijay Gore
Journal:  Curr Med Chem       Date:  2003-01       Impact factor: 4.530

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  1 in total

1.  Crystal structure of 3-(morpholin-4-yl)-1-phenyl-3-(pyridin-2-yl)propan-1-one.

Authors:  F M Mashood Ahamed; M Syed Ali Padusha; B Gunasekaran
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-01
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.