Literature DB >> 22199953

Dimethyl 2,6-dimethyl-4-phenyl-pyridine-3,5-dicarboxyl-ate.

Mukut Gohain1, Theunis J Muller, Barend C B Bezuidenhoudt.   

Abstract

In the title compound, C(17)H(17)NO(4), the dihedral angle between the benzene and pyridine rings is 75.51 (4)°. The benzene and pyridine rings are both approximately planar (r.m.s. deviations of 0.0040 and 0.0083 Å, respectively), indicating that the pyridine N atom is not protonated. The crystal structure is stabilized by weak inter-molecular C-H⋯O and C-H⋯N inter-actions.

Entities:  

Year:  2011        PMID: 22199953      PMCID: PMC3239105          DOI: 10.1107/S1600536811049865

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyridine derivatives, see: Lopez-Alarcon et al. (2004 ▶). For related structures, see: Rowan et al. (1996 ▶, 1997 ▶); Lou et al. (2010 ▶). For the sythesis, see: Debache et al. (2008 ▶). For the use of pyridine-type ligands in catalysis models, see: Roodt et al. (2011 ▶); van der Westhuizen et al. (2010 ▶) For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H17NO4 M = 299.32 Monoclinic, a = 16.0732 (4) Å b = 7.2497 (2) Å c = 13.1339 (3) Å β = 91.003 (1)° V = 1530.20 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.42 × 0.36 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.962, T max = 0.984 26541 measured reflections 3782 independent reflections 3132 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.114 S = 1.05 3782 reflections 203 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811049865/fk2046sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049865/fk2046Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811049865/fk2046Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H17NO4F(000) = 632
Mr = 299.32Dx = 1.299 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 16.0732 (4) ÅCell parameters from 6764 reflections
b = 7.2497 (2) Åθ = 3.1–28.2°
c = 13.1339 (3) ŵ = 0.09 mm1
β = 91.003 (1)°T = 100 K
V = 1530.20 (7) Å3Plate, colourless
Z = 40.42 × 0.36 × 0.18 mm
Bruker APEXII CCD diffractometer3132 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 28.3°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −19→21
Tmin = 0.962, Tmax = 0.984k = −9→9
26541 measured reflectionsl = −17→16
3782 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: geom and difmap
wR(F2) = 0.114H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0581P)2 + 0.5155P] where P = (Fo2 + 2Fc2)/3
3782 reflections(Δ/σ)max = 0.001
203 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The intensity data was collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 10 s/frame. A total of 1659 frames were collected with a frame width of 0.5° covering up to θ = 28.26° with 99.9% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.31920 (7)−0.26904 (16)0.51421 (9)0.0155 (2)
C20.32461 (7)−0.11146 (15)0.57614 (9)0.0143 (2)
C30.25177 (7)−0.02892 (15)0.61091 (8)0.0135 (2)
C40.17589 (7)−0.11187 (15)0.58352 (9)0.0143 (2)
C50.17515 (7)−0.27106 (16)0.52304 (9)0.0151 (2)
C60.39463 (8)−0.36532 (18)0.47394 (11)0.0233 (3)
H6A0.4141−0.45760.52340.035*
H6B0.4388−0.27480.46270.035*
H6C0.3802−0.42630.40940.035*
C70.09654 (8)−0.37102 (17)0.49311 (10)0.0209 (3)
H7A0.1002−0.4130.42240.031*
H7B0.049−0.28750.49950.031*
H7C0.0892−0.47770.53790.031*
C80.25268 (7)0.13135 (15)0.68224 (9)0.0140 (2)
C90.27156 (7)0.30990 (16)0.65095 (9)0.0176 (2)
H90.28690.33250.58260.021*
C100.26785 (8)0.45503 (16)0.71995 (9)0.0196 (3)
H100.280.57690.69820.023*
C110.24653 (7)0.42316 (17)0.82023 (9)0.0188 (3)
H110.24410.52290.8670.023*
C120.22882 (8)0.24556 (18)0.85221 (9)0.0213 (3)
H120.21480.22320.92110.026*
C130.23166 (8)0.10024 (17)0.78347 (9)0.0188 (3)
H130.2192−0.02130.80550.023*
C140.09598 (7)−0.02242 (16)0.61348 (9)0.0168 (2)
C15−0.02859 (8)−0.0577 (2)0.70350 (13)0.0324 (3)
H15A−0.02380.06490.73450.049*
H15B−0.0548−0.14250.75140.049*
H15C−0.0627−0.04980.64110.049*
C160.40794 (7)−0.03409 (16)0.60534 (9)0.0163 (2)
C170.53414 (8)−0.0953 (2)0.69408 (12)0.0314 (3)
H17A0.568−0.09710.63270.047*
H17B0.5573−0.18220.74420.047*
H17C0.53440.02930.7230.047*
N10.24576 (6)−0.34462 (13)0.48819 (7)0.0154 (2)
O10.07254 (6)0.12423 (12)0.58103 (8)0.0250 (2)
O20.05370 (6)−0.12553 (12)0.67903 (7)0.0227 (2)
O30.43443 (6)0.11142 (12)0.57660 (8)0.0236 (2)
O40.44906 (6)−0.14856 (13)0.66776 (7)0.0255 (2)
U11U22U33U12U13U23
C10.0148 (5)0.0143 (5)0.0174 (5)−0.0007 (4)0.0027 (4)0.0020 (4)
C20.0138 (5)0.0132 (5)0.0159 (5)−0.0015 (4)0.0001 (4)0.0024 (4)
C30.0154 (5)0.0111 (5)0.0139 (5)−0.0003 (4)0.0003 (4)0.0026 (4)
C40.0141 (5)0.0131 (5)0.0158 (5)0.0002 (4)0.0002 (4)0.0020 (4)
C50.0150 (5)0.0136 (5)0.0166 (5)−0.0012 (4)−0.0008 (4)0.0017 (4)
C60.0168 (6)0.0202 (6)0.0331 (7)−0.0010 (5)0.0066 (5)−0.0062 (5)
C70.0157 (6)0.0183 (6)0.0286 (7)−0.0023 (5)−0.0019 (5)−0.0055 (5)
C80.0126 (5)0.0137 (5)0.0157 (5)−0.0002 (4)−0.0015 (4)−0.0002 (4)
C90.0213 (6)0.0154 (6)0.0162 (5)−0.0018 (4)0.0009 (4)0.0014 (4)
C100.0232 (6)0.0131 (5)0.0223 (6)−0.0020 (5)−0.0023 (5)0.0001 (5)
C110.0183 (6)0.0181 (6)0.0197 (6)0.0012 (4)−0.0024 (5)−0.0056 (4)
C120.0261 (6)0.0228 (6)0.0151 (5)−0.0013 (5)0.0012 (5)−0.0001 (5)
C130.0232 (6)0.0153 (5)0.0179 (6)−0.0022 (5)0.0001 (5)0.0024 (4)
C140.0142 (5)0.0155 (5)0.0207 (6)−0.0016 (4)−0.0015 (4)−0.0030 (4)
C150.0200 (7)0.0269 (7)0.0508 (9)0.0028 (5)0.0155 (6)0.0014 (6)
C160.0135 (5)0.0167 (6)0.0189 (6)0.0001 (4)0.0020 (4)−0.0020 (4)
C170.0180 (6)0.0337 (8)0.0422 (8)−0.0033 (5)−0.0109 (6)0.0044 (6)
N10.0169 (5)0.0133 (5)0.0160 (5)−0.0006 (4)0.0007 (4)0.0009 (4)
O10.0198 (5)0.0183 (4)0.0368 (5)0.0049 (3)0.0015 (4)0.0042 (4)
O20.0173 (4)0.0203 (4)0.0308 (5)0.0013 (3)0.0084 (4)0.0020 (4)
O30.0174 (4)0.0173 (4)0.0361 (5)−0.0043 (3)0.0001 (4)0.0031 (4)
O40.0178 (4)0.0254 (5)0.0330 (5)−0.0043 (4)−0.0084 (4)0.0081 (4)
C1—N11.3402 (15)C9—H90.95
C1—C21.4042 (16)C10—C111.3861 (17)
C1—C61.5032 (16)C10—H100.95
C2—C31.3986 (15)C11—C121.3854 (18)
C2—C161.4958 (16)C11—H110.95
C3—C41.4011 (15)C12—C131.3887 (17)
C3—C81.4924 (15)C12—H120.95
C4—C51.4009 (16)C13—H130.95
C4—C141.4977 (16)C14—O11.2034 (15)
C5—N11.3417 (15)C14—O21.3350 (15)
C5—C71.5030 (16)C15—O21.4524 (15)
C6—H6A0.98C15—H15A0.98
C6—H6B0.98C15—H15B0.98
C6—H6C0.98C15—H15C0.98
C7—H7A0.98C16—O31.2009 (15)
C7—H7B0.98C16—O41.3338 (15)
C7—H7C0.98C17—O41.4568 (15)
C8—C91.3932 (16)C17—H17A0.98
C8—C131.3959 (16)C17—H17B0.98
C9—C101.3906 (17)C17—H17C0.98
N1—C1—C2121.72 (10)C11—C10—C9120.48 (11)
N1—C1—C6115.63 (10)C11—C10—H10119.8
C2—C1—C6122.64 (11)C9—C10—H10119.8
C3—C2—C1119.57 (10)C12—C11—C10119.90 (11)
C3—C2—C16120.45 (10)C12—C11—H11120
C1—C2—C16119.98 (10)C10—C11—H11120
C2—C3—C4117.54 (10)C11—C12—C13119.92 (11)
C2—C3—C8122.61 (10)C11—C12—H12120
C4—C3—C8119.62 (10)C13—C12—H12120
C5—C4—C3119.86 (10)C12—C13—C8120.52 (11)
C5—C4—C14120.45 (10)C12—C13—H13119.7
C3—C4—C14119.57 (10)C8—C13—H13119.7
N1—C5—C4121.47 (10)O1—C14—O2124.29 (11)
N1—C5—C7115.56 (10)O1—C14—C4123.65 (11)
C4—C5—C7122.97 (10)O2—C14—C4112.06 (10)
C1—C6—H6A109.5O2—C15—H15A109.5
C1—C6—H6B109.5O2—C15—H15B109.5
H6A—C6—H6B109.5H15A—C15—H15B109.5
C1—C6—H6C109.5O2—C15—H15C109.5
H6A—C6—H6C109.5H15A—C15—H15C109.5
H6B—C6—H6C109.5H15B—C15—H15C109.5
C5—C7—H7A109.5O3—C16—O4124.40 (11)
C5—C7—H7B109.5O3—C16—C2124.73 (11)
H7A—C7—H7B109.5O4—C16—C2110.87 (10)
C5—C7—H7C109.5O4—C17—H17A109.5
H7A—C7—H7C109.5O4—C17—H17B109.5
H7B—C7—H7C109.5H17A—C17—H17B109.5
C9—C8—C13119.26 (11)O4—C17—H17C109.5
C9—C8—C3122.55 (10)H17A—C17—H17C109.5
C13—C8—C3118.18 (10)H17B—C17—H17C109.5
C10—C9—C8119.91 (11)C1—N1—C5119.80 (10)
C10—C9—H9120C14—O2—C15115.40 (10)
C8—C9—H9120C16—O4—C17115.72 (10)
D—H···AD—HH···AD···AD—H···A
C6—H6B···O3i0.982.423.3825 (15)167.
C7—H7B···O1ii0.982.53.3826 (15)149.
C13—H13···N1iii0.952.623.2701 (16)126.
C15—H15A···O2iv0.982.563.5187 (17)165.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6B⋯O3i0.982.423.3825 (15)167
C7—H7B⋯O1ii0.982.53.3826 (15)149
C13—H13⋯N1iii0.952.623.2701 (16)126
C15—H15A⋯O2iv0.982.563.5187 (17)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Mechanism for the formation of substituted manganese(V) cyanidonitrido complexes: crystallographic and kinetic study of the substitution reactions of trans-[MnN(H2O)(CN)4]2- with monodentate pyridine and bidentate pyridine-carboxylate ligands.

Authors:  Hendrik J van der Westhuizen; Reinout Meijboom; Marietjie Schutte; Andreas Roodt
Journal:  Inorg Chem       Date:  2010-10-18       Impact factor: 5.165

3.  Reactivity of 1,4-dihydropyridines toward SIN-1-derived peroxynitrite.

Authors:  C López-Alarcón; H Speisky; J A Squella; C Olea-Azar; C Camargo; Luis J Núñez-Vergara
Journal:  Pharm Res       Date:  2004-10       Impact factor: 4.200

4.  3-Ethyl 5-methyl 4-(2,3-dichloro-phen-yl)-2,6-dimethyl-pyridine-3,5-dicarboxyl-ate.

Authors:  Jing Luo; Hui Chen; Qiao-Feng Wang; Hai-Jing Liu
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