Literature DB >> 22199946

N'-[(E)-(3-Phenyl-1H-pyrazol-4-yl)methyl-idene]naphtho-[2,1-b]furan-2-carbohydrazide monohydrate.

Hoong-Kun Fun, Wan-Sin Loh, Shridhar Malladi, B M Ganesh, Arun M Isloor.   

Abstract

In the title hydrate, C(23)H(16)N(4)O(2)·H(2)O, the pyrazole ring is approximately planar, with a maximum deviation of 0.023 (1) Å, and makes dihedral angles of 28.63 (6) and 46.44 (7)° with the naphtho-[2,1-b]furan ring system and the benzene ring, respectively, In the crystal, O-H⋯N, O-H⋯O, N-H⋯O, N-H⋯N, C-H⋯O and C-H⋯N hydrogen bonds link the mol-ecules, forming sheets lying parallel to the ab plane. The crystal structure also features C-H⋯π inter-actions involving the centroids of the pyrazole and benzene rings.

Entities:  

Year:  2011        PMID: 22199946      PMCID: PMC3239098          DOI: 10.1107/S1600536811050239

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of hydrazides, hydrazones and their adducts, see: Jahagirdar et al. (1990 ▶); Cavier & Rips (1965 ▶); Silva et al. (2005 ▶); Eissa & Soliman (2009 ▶). For a related structure, see: Choi et al. (2009 ▶). For the stability of the temperature controller used in the the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C23H16N4O2·H2O M = 398.41 Monoclinic, a = 7.1383 (1) Å b = 9.3928 (1) Å c = 28.4200 (4) Å β = 96.864 (1)° V = 1891.86 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.31 × 0.25 × 0.18 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.971, T max = 0.983 21248 measured reflections 5516 independent reflections 3857 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.129 S = 1.03 5516 reflections 279 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811050239/hb6529sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050239/hb6529Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050239/hb6529Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H16N4O2·H2OF(000) = 832
Mr = 398.41Dx = 1.399 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3650 reflections
a = 7.1383 (1) Åθ = 2.3–29.5°
b = 9.3928 (1) ŵ = 0.10 mm1
c = 28.4200 (4) ÅT = 100 K
β = 96.864 (1)°Block, colourless
V = 1891.86 (4) Å30.31 × 0.25 × 0.18 mm
Z = 4
Bruker SMART APEXII CCD diffractometer5516 independent reflections
Radiation source: fine-focus sealed tube3857 reflections with I > 2σ(I)
graphiteRint = 0.058
φ and ω scansθmax = 30.1°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→10
Tmin = 0.971, Tmax = 0.983k = −13→13
21248 measured reflectionsl = −39→40
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0566P)2 + 0.4389P] where P = (Fo2 + 2Fc2)/3
5516 reflections(Δ/σ)max < 0.001
279 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.43329 (14)1.04167 (12)0.06904 (4)0.0190 (2)
O20.91817 (15)1.01592 (13)0.11647 (4)0.0251 (3)
N10.65264 (19)0.90451 (14)0.13601 (4)0.0177 (3)
N20.75457 (18)0.82808 (14)0.17263 (4)0.0177 (3)
N30.93853 (18)0.49668 (15)0.27204 (5)0.0196 (3)
N40.78932 (17)0.40748 (14)0.26062 (5)0.0196 (3)
C10.3524 (2)1.12767 (17)0.03335 (5)0.0183 (3)
C20.1589 (2)1.13360 (19)0.01844 (6)0.0232 (3)
H2A0.07111.07690.03270.028*
C30.1027 (2)1.22541 (19)−0.01779 (6)0.0245 (4)
H3A−0.02751.2308−0.02940.029*
C40.2337 (2)1.31378 (18)−0.03878 (6)0.0212 (3)
C50.1705 (2)1.41189 (19)−0.07502 (6)0.0242 (4)
H5A0.03981.4178−0.08610.029*
C60.2963 (2)1.49881 (18)−0.09438 (6)0.0248 (4)
H6A0.25141.5661−0.11800.030*
C70.4909 (2)1.48864 (18)−0.07936 (6)0.0238 (3)
H7A0.57721.5474−0.09340.029*
C80.5563 (2)1.39364 (17)−0.04433 (6)0.0210 (3)
H8A0.68781.3874−0.03430.025*
C90.4303 (2)1.30561 (17)−0.02320 (5)0.0185 (3)
C100.4875 (2)1.20827 (16)0.01465 (5)0.0170 (3)
C110.6639 (2)1.17157 (17)0.04153 (5)0.0188 (3)
H11A0.78461.20950.03770.023*
C120.6241 (2)1.07205 (17)0.07342 (5)0.0175 (3)
C130.7456 (2)0.99555 (17)0.11028 (5)0.0184 (3)
C140.6704 (2)0.71368 (16)0.18341 (5)0.0167 (3)
H14A0.54970.69310.16690.020*
C150.7500 (2)0.61507 (16)0.21930 (5)0.0166 (3)
C160.9210 (2)0.61994 (17)0.24849 (5)0.0185 (3)
H16A1.00870.69650.25120.022*
C170.6738 (2)0.47933 (16)0.22852 (5)0.0168 (3)
C180.4979 (2)0.41425 (16)0.20556 (5)0.0169 (3)
C190.4996 (2)0.27495 (17)0.18791 (5)0.0197 (3)
H19A0.61220.22030.19270.024*
C200.3376 (2)0.21643 (18)0.16353 (6)0.0229 (3)
H20A0.33960.12190.15170.027*
C210.1728 (2)0.29580 (19)0.15644 (6)0.0236 (4)
H21A0.06290.25640.13910.028*
C220.1685 (2)0.43245 (18)0.17454 (5)0.0209 (3)
H22A0.05500.48620.17000.025*
C230.3301 (2)0.49127 (17)0.19929 (5)0.0187 (3)
H23A0.32590.58460.21200.022*
O1W0.25339 (16)0.83476 (13)0.13979 (4)0.0270 (3)
H1W10.25180.83800.17010.041*
H2W10.14600.86940.12510.041*
H1N31.036 (3)0.467 (3)0.2959 (9)0.064 (8)*
H1N10.523 (4)0.888 (3)0.1276 (9)0.061 (7)*
U11U22U33U12U13U23
O10.0172 (5)0.0208 (6)0.0183 (5)−0.0003 (4)−0.0002 (4)0.0029 (4)
O20.0196 (6)0.0262 (6)0.0277 (6)−0.0049 (5)−0.0040 (4)0.0068 (5)
N10.0180 (6)0.0176 (6)0.0168 (6)−0.0007 (5)−0.0016 (5)0.0038 (5)
N20.0193 (6)0.0173 (6)0.0158 (6)0.0009 (5)−0.0011 (5)0.0011 (5)
N30.0163 (6)0.0231 (7)0.0185 (6)−0.0006 (5)−0.0014 (5)0.0028 (6)
N40.0175 (6)0.0204 (7)0.0203 (7)0.0000 (5)0.0005 (5)0.0027 (5)
C10.0208 (7)0.0189 (7)0.0150 (7)0.0015 (6)0.0013 (6)0.0009 (6)
C20.0181 (8)0.0287 (9)0.0229 (8)−0.0027 (7)0.0024 (6)0.0043 (7)
C30.0189 (8)0.0305 (9)0.0238 (8)0.0017 (7)0.0017 (6)0.0034 (7)
C40.0222 (8)0.0233 (8)0.0178 (7)0.0020 (7)0.0017 (6)0.0003 (6)
C50.0240 (8)0.0289 (9)0.0191 (8)0.0053 (7)0.0004 (6)0.0024 (7)
C60.0334 (9)0.0234 (8)0.0176 (8)0.0068 (7)0.0025 (6)0.0032 (7)
C70.0299 (9)0.0229 (8)0.0192 (8)−0.0009 (7)0.0055 (6)0.0010 (7)
C80.0238 (8)0.0203 (8)0.0193 (8)0.0000 (6)0.0047 (6)0.0010 (6)
C90.0207 (8)0.0195 (8)0.0151 (7)0.0011 (6)0.0024 (6)−0.0006 (6)
C100.0175 (7)0.0181 (7)0.0152 (7)0.0011 (6)0.0013 (5)−0.0003 (6)
C110.0173 (7)0.0194 (8)0.0195 (7)0.0003 (6)0.0011 (6)0.0002 (6)
C120.0161 (7)0.0181 (7)0.0179 (7)−0.0015 (6)0.0002 (5)−0.0006 (6)
C130.0195 (7)0.0176 (7)0.0176 (7)−0.0015 (6)−0.0004 (6)0.0001 (6)
C140.0166 (7)0.0170 (7)0.0164 (7)0.0011 (6)0.0009 (5)−0.0014 (6)
C150.0177 (7)0.0169 (7)0.0153 (7)0.0015 (6)0.0022 (5)−0.0008 (6)
C160.0180 (7)0.0202 (8)0.0173 (7)−0.0004 (6)0.0028 (6)0.0008 (6)
C170.0182 (7)0.0173 (7)0.0150 (7)0.0024 (6)0.0029 (5)−0.0001 (6)
C180.0193 (7)0.0173 (7)0.0141 (7)−0.0024 (6)0.0020 (5)0.0027 (6)
C190.0223 (8)0.0179 (8)0.0194 (8)0.0008 (6)0.0039 (6)0.0021 (6)
C200.0292 (9)0.0193 (8)0.0213 (8)−0.0066 (7)0.0075 (6)−0.0027 (6)
C210.0230 (8)0.0291 (9)0.0190 (8)−0.0091 (7)0.0035 (6)−0.0016 (7)
C220.0162 (7)0.0268 (9)0.0195 (8)−0.0004 (6)0.0015 (6)0.0003 (7)
C230.0191 (7)0.0185 (8)0.0186 (7)0.0004 (6)0.0021 (6)−0.0007 (6)
O1W0.0273 (6)0.0292 (7)0.0257 (6)0.0054 (5)0.0076 (5)0.0018 (5)
O1—C11.3692 (18)C8—H8A0.9500
O1—C121.3826 (17)C9—C101.433 (2)
O2—C131.2383 (18)C10—C111.435 (2)
N1—C131.3499 (19)C11—C121.356 (2)
N1—N21.3954 (17)C11—H11A0.9500
N1—H1N10.94 (2)C12—C131.466 (2)
N2—C141.2860 (19)C14—C151.443 (2)
N3—C161.336 (2)C14—H14A0.9500
N3—N41.3636 (18)C15—C161.392 (2)
N3—H1N30.96 (2)C15—C171.423 (2)
N4—C171.3372 (19)C16—H16A0.9500
C1—C101.381 (2)C17—C181.476 (2)
C1—C21.397 (2)C18—C231.393 (2)
C2—C31.366 (2)C18—C191.402 (2)
C2—H2A0.9500C19—C201.389 (2)
C3—C41.433 (2)C19—H19A0.9500
C3—H3A0.9500C20—C211.387 (2)
C4—C51.415 (2)C20—H20A0.9500
C4—C91.422 (2)C21—C221.384 (2)
C5—C61.376 (2)C21—H21A0.9500
C5—H5A0.9500C22—C231.392 (2)
C6—C71.407 (2)C22—H22A0.9500
C6—H6A0.9500C23—H23A0.9500
C7—C81.376 (2)O1W—H1W10.8628
C7—H7A0.9500O1W—H2W10.8895
C8—C91.408 (2)
C1—O1—C12105.57 (12)C12—C11—H11A126.8
C13—N1—N2118.93 (13)C10—C11—H11A126.8
C13—N1—H1N1119.8 (15)C11—C12—O1111.43 (13)
N2—N1—H1N1121.1 (15)C11—C12—C13131.48 (14)
C14—N2—N1113.00 (12)O1—C12—C13117.09 (13)
C16—N3—N4112.94 (13)O2—C13—N1124.46 (14)
C16—N3—H1N3128.8 (15)O2—C13—C12121.30 (14)
N4—N3—H1N3118.2 (15)N1—C13—C12114.24 (13)
C17—N4—N3104.65 (13)N2—C14—C15123.27 (14)
O1—C1—C10110.89 (13)N2—C14—H14A118.4
O1—C1—C2124.22 (14)C15—C14—H14A118.4
C10—C1—C2124.89 (14)C16—C15—C17104.31 (13)
C3—C2—C1116.37 (15)C16—C15—C14130.05 (14)
C3—C2—H2A121.8C17—C15—C14125.31 (14)
C1—C2—H2A121.8N3—C16—C15107.04 (14)
C2—C3—C4122.18 (15)N3—C16—H16A126.5
C2—C3—H3A118.9C15—C16—H16A126.5
C4—C3—H3A118.9N4—C17—C15111.07 (13)
C5—C4—C9118.60 (15)N4—C17—C18121.01 (14)
C5—C4—C3120.88 (15)C15—C17—C18127.84 (13)
C9—C4—C3120.51 (14)C23—C18—C19118.89 (14)
C6—C5—C4120.73 (15)C23—C18—C17120.96 (14)
C6—C5—H5A119.6C19—C18—C17120.10 (14)
C4—C5—H5A119.6C20—C19—C18120.38 (15)
C5—C6—C7120.41 (15)C20—C19—H19A119.8
C5—C6—H6A119.8C18—C19—H19A119.8
C7—C6—H6A119.8C21—C20—C19120.06 (15)
C8—C7—C6120.04 (15)C21—C20—H20A120.0
C8—C7—H7A120.0C19—C20—H20A120.0
C6—C7—H7A120.0C22—C21—C20120.04 (15)
C7—C8—C9120.71 (15)C22—C21—H21A120.0
C7—C8—H8A119.6C20—C21—H21A120.0
C9—C8—H8A119.6C21—C22—C23120.13 (15)
C8—C9—C4119.48 (14)C21—C22—H22A119.9
C8—C9—C10123.75 (14)C23—C22—H22A119.9
C4—C9—C10116.75 (14)C22—C23—C18120.45 (15)
C1—C10—C9119.27 (14)C22—C23—H23A119.8
C1—C10—C11105.79 (13)C18—C23—H23A119.8
C9—C10—C11134.91 (14)H1W1—O1W—H2W1110.0
C12—C11—C10106.30 (13)
C13—N1—N2—C14−157.33 (14)C1—O1—C12—C11−0.81 (17)
C16—N3—N4—C17−0.15 (17)C1—O1—C12—C13178.90 (13)
C12—O1—C1—C101.37 (17)N2—N1—C13—O20.8 (2)
C12—O1—C1—C2−177.96 (15)N2—N1—C13—C12−178.86 (13)
O1—C1—C2—C3−179.88 (15)C11—C12—C13—O2−0.6 (3)
C10—C1—C2—C30.9 (3)O1—C12—C13—O2179.70 (14)
C1—C2—C3—C4−1.5 (3)C11—C12—C13—N1178.97 (16)
C2—C3—C4—C5−177.51 (16)O1—C12—C13—N1−0.7 (2)
C2—C3—C4—C91.8 (3)N1—N2—C14—C15178.31 (13)
C9—C4—C5—C6−0.8 (2)N2—C14—C15—C160.5 (3)
C3—C4—C5—C6178.56 (16)N2—C14—C15—C17−171.90 (14)
C4—C5—C6—C71.8 (3)N4—N3—C16—C150.06 (17)
C5—C6—C7—C8−1.5 (3)C17—C15—C16—N30.06 (16)
C6—C7—C8—C90.1 (2)C14—C15—C16—N3−173.53 (15)
C7—C8—C9—C40.9 (2)N3—N4—C17—C150.18 (16)
C7—C8—C9—C10−177.53 (15)N3—N4—C17—C18177.03 (13)
C5—C4—C9—C8−0.6 (2)C16—C15—C17—N4−0.15 (17)
C3—C4—C9—C8−179.93 (15)C14—C15—C17—N4173.83 (14)
C5—C4—C9—C10177.97 (14)C16—C15—C17—C18−176.73 (14)
C3—C4—C9—C10−1.4 (2)C14—C15—C17—C18−2.8 (2)
O1—C1—C10—C9−179.87 (13)N4—C17—C18—C23136.78 (15)
C2—C1—C10—C9−0.5 (2)C15—C17—C18—C23−46.9 (2)
O1—C1—C10—C11−1.39 (17)N4—C17—C18—C19−45.9 (2)
C2—C1—C10—C11177.93 (15)C15—C17—C18—C19130.41 (16)
C8—C9—C10—C1179.24 (15)C23—C18—C19—C201.6 (2)
C4—C9—C10—C10.8 (2)C17—C18—C19—C20−175.76 (14)
C8—C9—C10—C111.3 (3)C18—C19—C20—C210.1 (2)
C4—C9—C10—C11−177.16 (16)C19—C20—C21—C22−1.4 (2)
C1—C10—C11—C120.84 (17)C20—C21—C22—C230.9 (2)
C9—C10—C11—C12178.97 (17)C21—C22—C23—C180.8 (2)
C10—C11—C12—O1−0.02 (18)C19—C18—C23—C22−2.1 (2)
C10—C11—C12—C13−179.69 (16)C17—C18—C23—C22175.28 (14)
Cg1 and Cg2 are the centroids of the C18–C23 and N3/N4/C17/C15/C16 rings, respectively.
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···N4i0.862.132.9625 (18)163
O1W—H2W1···O2ii0.892.122.9465 (16)154
N3—H1N3···O2iii0.95 (2)2.52 (3)3.2162 (18)130.4 (19)
N3—H1N3···N2iii0.95 (2)2.10 (3)2.9927 (19)155 (2)
N1—H1N1···O1W0.94 (3)2.06 (3)2.9388 (18)155 (2)
C14—H14A···O1W0.952.543.2877 (18)136
C16—H16A···N4iv0.952.503.430 (2)167
C21—H21A···O2v0.952.533.318 (2)140
C7—H7A···Cg2vi0.952.803.6022 (18)142
C22—H22A···Cg1ii0.952.933.5274 (16)122
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C18–C23 and N3/N4/C15–C17 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯N4i0.862.132.9625 (18)163
O1W—H2W1⋯O2ii0.892.122.9465 (16)154
N3—H1N3⋯O2iii0.95 (2)2.52 (3)3.2162 (18)130.4 (19)
N3—H1N3⋯N2iii0.95 (2)2.10 (3)2.9927 (19)155 (2)
N1—H1N1⋯O1W0.94 (3)2.06 (3)2.9388 (18)155 (2)
C14—H14A⋯O1W0.952.543.2877 (18)136
C16—H16A⋯N4iv0.952.503.430 (2)167
C21—H21A⋯O2v0.952.533.318 (2)140
C7—H7ACg2vi0.952.803.6022 (18)142
C22—H22ACg1ii0.952.933.5274 (16)122

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  5 in total

1.  Synthesis and vasodilatory activity of new N-acylhydrazone derivatives, designed as LASSBio-294 analogues.

Authors:  Alexandre G Silva; Gisele Zapata-Sudo; Arthur E Kummerle; Carlos A M Fraga; Eliezer J Barreiro; Roberto T Sudo
Journal:  Bioorg Med Chem       Date:  2005-05-16       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  2-Phenyl-1-(phenyl-sulfin-yl)naphtho[2,1-b]furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

4.  Synthesis, biological evaluation and docking studies of novel benzopyranone congeners for their expected activity as anti-inflammatory, analgesic and antipyretic agents.

Authors:  Amal A M Eissa; Nahla A H Farag; Gamal A H Soliman
Journal:  Bioorg Med Chem       Date:  2009-06-13       Impact factor: 3.641

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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