| Literature DB >> 22199945 |
Horacio A Priestap, Khalil A Abboud, Alvaro E Velandia, Luis A Lopez, Manuel A Barbieri.
Abstract
Dehydro-leucodin [systematic name: (1S,6S,2R)-9,13-dimeth-yl-5-methyl-ene-3-oxatricyclo-[8.3.0.0(2,6)]trideca-9,12-diene-4,11-dione], C(15)H(16)O(3), is a guanolide isolated from Artemisia douglasiana. The fused-ring system contains a seven-membered ring that adopts a chair conformation, a fused planar cyclo-pentenone ring and a five-membered lactone ring fused in envelope conformation. The absolute structure determined by X-ray analysis agrees with that previously assigned to this compound by NMR studies [Bohlmann & Zdero (1972 ▶). Tetra-hedron Lett.13, 621-624] and also with that of leucodine, a closely related guaianolide [Martinez et al. (1988 ▶). J. Nat. Prod.51, 221-228].Entities:
Year: 2011 PMID: 22199945 PMCID: PMC3239097 DOI: 10.1107/S1600536811048938
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H16O3 | Dehydroleucodin |
| Orthorhombic, | Cu |
| Hall symbol: P 2ac 2ab | Cell parameters from 9973 reflections |
| θ = 2.9–67.8° | |
| µ = 0.73 mm−1 | |
| Needles, colourless | |
| 0.29 × 0.07 × 0.05 mm | |
| Bruker APEXII DUO diffractometer | 2166 independent reflections |
| Radiation source: IµS microsource | 2150 reflections with |
| graphite | |
| phi and ω scans | θmax = 66.4°, θmin = 5.0° |
| Absorption correction: integration ( | |
| 10896 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2166 reflections | Δρmax = 0.19 e Å−3 |
| 165 parameters | Δρmin = −0.14 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 879 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.00 (17) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. All H atoms were positioned geometrically (C—H=0.93/1.00 Å) and allowed to
ride with |
| O1 | 0.81504 (13) | −0.02962 (8) | 0.26751 (7) | 0.0312 (2) | |
| O2 | 0.80476 (13) | 0.43297 (8) | 0.09948 (6) | 0.0248 (2) | |
| O3 | 0.87294 (16) | 0.62331 (10) | 0.06281 (7) | 0.0411 (3) | |
| C1 | 0.68912 (15) | 0.17287 (10) | 0.25112 (8) | 0.0192 (3) | |
| C2 | 0.77553 (16) | 0.05869 (11) | 0.22172 (10) | 0.0240 (3) | |
| C3 | 0.79958 (18) | 0.06797 (12) | 0.12543 (10) | 0.0278 (3) | |
| H3A | 0.8526 | 0.0072 | 0.0897 | 0.033* | |
| C4 | 0.73794 (16) | 0.17220 (12) | 0.09389 (9) | 0.0241 (3) | |
| C5 | 0.66907 (16) | 0.25183 (10) | 0.16885 (8) | 0.0192 (3) | |
| H5A | 0.5406 | 0.2712 | 0.1588 | 0.023* | |
| C6 | 0.77492 (16) | 0.36796 (10) | 0.18300 (8) | 0.0183 (3) | |
| H6A | 0.8926 | 0.3478 | 0.2104 | 0.022* | |
| C7 | 0.68007 (16) | 0.46068 (10) | 0.24137 (8) | 0.0190 (3) | |
| H7A | 0.5548 | 0.4662 | 0.2191 | 0.023* | |
| C8 | 0.66895 (18) | 0.43149 (11) | 0.33978 (8) | 0.0227 (3) | |
| H8A | 0.6197 | 0.5015 | 0.3723 | 0.027* | |
| H8B | 0.7899 | 0.4154 | 0.3631 | 0.027* | |
| C9 | 0.55009 (17) | 0.32097 (11) | 0.35585 (8) | 0.0224 (3) | |
| H9A | 0.5127 | 0.3202 | 0.4190 | 0.027* | |
| H9B | 0.4414 | 0.3286 | 0.3190 | 0.027* | |
| C10 | 0.63981 (17) | 0.20247 (11) | 0.33441 (9) | 0.0209 (3) | |
| C11 | 0.77282 (17) | 0.57383 (11) | 0.21226 (9) | 0.0215 (3) | |
| C12 | 0.82427 (19) | 0.55285 (12) | 0.11838 (9) | 0.0269 (3) | |
| C13 | 0.80965 (17) | 0.67457 (11) | 0.25533 (10) | 0.0266 (3) | |
| H13A | 0.8719 | 0.7376 | 0.2260 | 0.032* | |
| H13B | 0.7739 | 0.6839 | 0.3156 | 0.032* | |
| C14 | 0.7232 (2) | 0.20714 (14) | −0.00173 (9) | 0.0321 (3) | |
| H14A | 0.7834 | 0.1469 | −0.0387 | 0.048* | |
| H14B | 0.7792 | 0.2859 | −0.0107 | 0.048* | |
| H14C | 0.5973 | 0.2116 | −0.0186 | 0.048* | |
| C15 | 0.6668 (2) | 0.12277 (12) | 0.41396 (9) | 0.0304 (3) | |
| H15A | 0.5508 | 0.0977 | 0.4374 | 0.046* | |
| H15B | 0.7319 | 0.1671 | 0.4600 | 0.046* | |
| H15C | 0.7353 | 0.0515 | 0.3964 | 0.046* |
| O1 | 0.0261 (5) | 0.0160 (4) | 0.0516 (6) | 0.0001 (4) | −0.0029 (4) | 0.0034 (4) |
| O2 | 0.0299 (5) | 0.0231 (4) | 0.0214 (4) | −0.0035 (4) | 0.0023 (4) | 0.0021 (4) |
| O3 | 0.0564 (7) | 0.0322 (6) | 0.0347 (6) | −0.0113 (5) | 0.0045 (5) | 0.0112 (5) |
| C1 | 0.0158 (6) | 0.0158 (5) | 0.0261 (6) | −0.0017 (5) | −0.0029 (5) | 0.0001 (5) |
| C2 | 0.0158 (6) | 0.0161 (6) | 0.0401 (8) | −0.0039 (5) | −0.0027 (5) | −0.0029 (5) |
| C3 | 0.0244 (7) | 0.0213 (6) | 0.0377 (8) | −0.0010 (6) | 0.0033 (6) | −0.0118 (6) |
| C4 | 0.0191 (6) | 0.0257 (6) | 0.0275 (7) | −0.0051 (5) | 0.0011 (5) | −0.0076 (6) |
| C5 | 0.0169 (6) | 0.0182 (6) | 0.0225 (6) | −0.0011 (5) | −0.0013 (5) | −0.0027 (5) |
| C6 | 0.0186 (6) | 0.0176 (6) | 0.0186 (6) | −0.0002 (5) | −0.0010 (5) | 0.0015 (5) |
| C7 | 0.0179 (6) | 0.0156 (5) | 0.0236 (6) | 0.0019 (5) | −0.0008 (5) | −0.0001 (5) |
| C8 | 0.0275 (7) | 0.0179 (6) | 0.0227 (7) | 0.0003 (5) | −0.0003 (5) | −0.0032 (5) |
| C9 | 0.0259 (6) | 0.0215 (6) | 0.0198 (6) | −0.0015 (6) | 0.0017 (5) | −0.0022 (5) |
| C10 | 0.0193 (6) | 0.0181 (6) | 0.0253 (6) | −0.0041 (5) | −0.0037 (5) | 0.0014 (5) |
| C11 | 0.0176 (6) | 0.0179 (6) | 0.0289 (7) | 0.0018 (5) | −0.0032 (5) | 0.0037 (5) |
| C12 | 0.0277 (7) | 0.0223 (6) | 0.0305 (7) | −0.0047 (6) | −0.0033 (6) | 0.0050 (5) |
| C13 | 0.0219 (6) | 0.0190 (6) | 0.0389 (7) | 0.0007 (5) | −0.0039 (6) | 0.0003 (6) |
| C14 | 0.0315 (8) | 0.0399 (8) | 0.0251 (7) | −0.0044 (6) | 0.0018 (6) | −0.0099 (6) |
| C15 | 0.0371 (8) | 0.0252 (6) | 0.0288 (7) | −0.0026 (6) | −0.0048 (6) | 0.0075 (6) |
| O1—C2 | 1.2343 (17) | C7—H7A | 1.0000 |
| O2—C12 | 1.3692 (16) | C8—C9 | 1.5369 (17) |
| O2—C6 | 1.4649 (14) | C8—H8A | 0.9900 |
| O3—C12 | 1.2012 (17) | C8—H8B | 0.9900 |
| C1—C10 | 1.3456 (19) | C9—C10 | 1.5132 (17) |
| C1—C2 | 1.4914 (16) | C9—H9A | 0.9900 |
| C1—C5 | 1.5230 (17) | C9—H9B | 0.9900 |
| C2—C3 | 1.461 (2) | C10—C15 | 1.5009 (18) |
| C3—C4 | 1.334 (2) | C11—C13 | 1.3218 (18) |
| C3—H3A | 0.9500 | C11—C12 | 1.4808 (19) |
| C4—C14 | 1.4920 (19) | C13—H13A | 0.9500 |
| C4—C5 | 1.5225 (17) | C13—H13B | 0.9500 |
| C5—C6 | 1.5299 (16) | C14—H14A | 0.9800 |
| C5—H5A | 1.0000 | C14—H14B | 0.9800 |
| C6—C7 | 1.5286 (17) | C14—H14C | 0.9800 |
| C6—H6A | 1.0000 | C15—H15A | 0.9800 |
| C7—C11 | 1.5019 (16) | C15—H15B | 0.9800 |
| C7—C8 | 1.5158 (17) | C15—H15C | 0.9800 |
| C12—O2—C6 | 108.55 (9) | C7—C8—H8B | 109.5 |
| C10—C1—C2 | 127.08 (12) | C9—C8—H8B | 109.5 |
| C10—C1—C5 | 125.92 (11) | H8A—C8—H8B | 108.1 |
| C2—C1—C5 | 107.0 (1) | C10—C9—C8 | 113.74 (10) |
| O1—C2—C3 | 125.31 (13) | C10—C9—H9A | 108.8 |
| O1—C2—C1 | 127.97 (13) | C8—C9—H9A | 108.8 |
| C3—C2—C1 | 106.68 (11) | C10—C9—H9B | 108.8 |
| C4—C3—C2 | 111.72 (12) | C8—C9—H9B | 108.8 |
| C4—C3—H3A | 124.1 | H9A—C9—H9B | 107.7 |
| C2—C3—H3A | 124.1 | C1—C10—C15 | 123.99 (12) |
| C3—C4—C14 | 126.41 (12) | C1—C10—C9 | 122.21 (11) |
| C3—C4—C5 | 111.05 (12) | C15—C10—C9 | 113.80 (11) |
| C14—C4—C5 | 122.40 (12) | C13—C11—C12 | 123.01 (12) |
| C4—C5—C1 | 103.43 (10) | C13—C11—C7 | 131.52 (13) |
| C4—C5—C6 | 114.58 (10) | C12—C11—C7 | 105.47 (10) |
| C1—C5—C6 | 108.75 (9) | O3—C12—O2 | 121.46 (13) |
| C4—C5—H5A | 110.0 | O3—C12—C11 | 129.70 (13) |
| C1—C5—H5A | 110.0 | O2—C12—C11 | 108.82 (11) |
| C6—C5—H5A | 110.0 | C11—C13—H13A | 120.0 |
| O2—C6—C7 | 103.33 (9) | C11—C13—H13B | 120.0 |
| O2—C6—C5 | 112.09 (9) | H13A—C13—H13B | 120.0 |
| C7—C6—C5 | 113.92 (10) | C4—C14—H14A | 109.5 |
| O2—C6—H6A | 109.1 | C4—C14—H14B | 109.5 |
| C7—C6—H6A | 109.1 | H14A—C14—H14B | 109.5 |
| C5—C6—H6A | 109.1 | C4—C14—H14C | 109.5 |
| C11—C7—C8 | 119.24 (11) | H14A—C14—H14C | 109.5 |
| C11—C7—C6 | 100.4 (1) | H14B—C14—H14C | 109.5 |
| C8—C7—C6 | 116.17 (10) | C10—C15—H15A | 109.5 |
| C11—C7—H7A | 106.7 | C10—C15—H15B | 109.5 |
| C8—C7—H7A | 106.7 | H15A—C15—H15B | 109.5 |
| C6—C7—H7A | 106.7 | C10—C15—H15C | 109.5 |
| C7—C8—C9 | 110.86 (10) | H15A—C15—H15C | 109.5 |
| C7—C8—H8A | 109.5 | H15B—C15—H15C | 109.5 |
| C9—C8—H8A | 109.5 |