Literature DB >> 22199945

Dehydro-leucodin: a guaiane-type sesquiterpene lactone.

Horacio A Priestap, Khalil A Abboud, Alvaro E Velandia, Luis A Lopez, Manuel A Barbieri.   

Abstract

Dehydro-leucodin [systematic name: (1S,6S,2R)-9,13-dimeth-yl-5-methyl-ene-3-oxatricyclo-[8.3.0.0(2,6)]trideca-9,12-diene-4,11-dione], C(15)H(16)O(3), is a guanolide isolated from Artemisia douglasiana. The fused-ring system contains a seven-membered ring that adopts a chair conformation, a fused planar cyclo-pentenone ring and a five-membered lactone ring fused in envelope conformation. The absolute structure determined by X-ray analysis agrees with that previously assigned to this compound by NMR studies [Bohlmann & Zdero (1972 ▶). Tetra-hedron Lett.13, 621-624] and also with that of leucodine, a closely related guaianolide [Martinez et al. (1988 ▶). J. Nat. Prod.51, 221-228].

Entities:  

Year:  2011        PMID: 22199945      PMCID: PMC3239097          DOI: 10.1107/S1600536811048938

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For NMR studies of dehydro­leucodin and leucodine, see: Bohlmann & Zdero (1972 ▶); Martinez et al., (1988 ▶). For the pharmacological activity of dehydro­leucodin and related compounds, see Giordano et al. (1992 ▶).

Experimental

Crystal data

C15H16O3 M = 244.28 Orthorhombic, a = 7.5101 (3) Å b = 11.1065 (4) Å c = 15.0228 (6) Å V = 1253.07 (8) Å3 Z = 4 Cu Kα radiation μ = 0.73 mm−1 T = 100 K 0.29 × 0.07 × 0.05 mm

Data collection

Bruker APEXII DUO diffractometer Absorption correction: integration (SADABS; Bruker, 2008 ▶) T min = 0.820, T max = 0.962 10896 measured reflections 2166 independent reflections 2150 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.068 S = 1.05 2166 reflections 165 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Flack (1983 ▶), 879 Friedel pairs Flack parameter: 0.00 (17) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811048938/bg2432sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048938/bg2432Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811048938/bg2432Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811048938/bg2432Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H16O3Dehydroleucodin
Mr = 244.28Dx = 1.295 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 9973 reflections
a = 7.5101 (3) Åθ = 2.9–67.8°
b = 11.1065 (4) ŵ = 0.73 mm1
c = 15.0228 (6) ÅT = 100 K
V = 1253.07 (8) Å3Needles, colourless
Z = 40.29 × 0.07 × 0.05 mm
F(000) = 520
Bruker APEXII DUO diffractometer2166 independent reflections
Radiation source: IµS microsource2150 reflections with I > 2σ(I)
graphiteRint = 0.064
phi and ω scansθmax = 66.4°, θmin = 5.0°
Absorption correction: integration (SADABS; Bruker, 2008)h = −8→7
Tmin = 0.820, Tmax = 0.962k = −13→12
10896 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.068w = 1/[σ2(Fo2) + (0.0273P)2 + 0.2735P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2166 reflectionsΔρmax = 0.19 e Å3
165 parametersΔρmin = −0.14 e Å3
0 restraintsAbsolute structure: Flack (1983), 879 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. All H atoms were positioned geometrically (C—H=0.93/1.00 Å) and allowed to ride with Uiso(H)=1.2/1.5Ueq(C). Methyl ones were allowed to rotate around the corresponding C—C. The Flack x parameter is 0.00 (17) confirming that the correct enantiomer is refined for this structure.
xyzUiso*/Ueq
O10.81504 (13)−0.02962 (8)0.26751 (7)0.0312 (2)
O20.80476 (13)0.43297 (8)0.09948 (6)0.0248 (2)
O30.87294 (16)0.62331 (10)0.06281 (7)0.0411 (3)
C10.68912 (15)0.17287 (10)0.25112 (8)0.0192 (3)
C20.77553 (16)0.05869 (11)0.22172 (10)0.0240 (3)
C30.79958 (18)0.06797 (12)0.12543 (10)0.0278 (3)
H3A0.85260.00720.08970.033*
C40.73794 (16)0.17220 (12)0.09389 (9)0.0241 (3)
C50.66907 (16)0.25183 (10)0.16885 (8)0.0192 (3)
H5A0.54060.27120.15880.023*
C60.77492 (16)0.36796 (10)0.18300 (8)0.0183 (3)
H6A0.89260.34780.21040.022*
C70.68007 (16)0.46068 (10)0.24137 (8)0.0190 (3)
H7A0.55480.46620.21910.023*
C80.66895 (18)0.43149 (11)0.33978 (8)0.0227 (3)
H8A0.61970.50150.37230.027*
H8B0.78990.41540.36310.027*
C90.55009 (17)0.32097 (11)0.35585 (8)0.0224 (3)
H9A0.51270.32020.41900.027*
H9B0.44140.32860.31900.027*
C100.63981 (17)0.20247 (11)0.33441 (9)0.0209 (3)
C110.77282 (17)0.57383 (11)0.21226 (9)0.0215 (3)
C120.82427 (19)0.55285 (12)0.11838 (9)0.0269 (3)
C130.80965 (17)0.67457 (11)0.25533 (10)0.0266 (3)
H13A0.87190.73760.22600.032*
H13B0.77390.68390.31560.032*
C140.7232 (2)0.20714 (14)−0.00173 (9)0.0321 (3)
H14A0.78340.1469−0.03870.048*
H14B0.77920.2859−0.01070.048*
H14C0.59730.2116−0.01860.048*
C150.6668 (2)0.12277 (12)0.41396 (9)0.0304 (3)
H15A0.55080.09770.43740.046*
H15B0.73190.16710.46000.046*
H15C0.73530.05150.39640.046*
U11U22U33U12U13U23
O10.0261 (5)0.0160 (4)0.0516 (6)0.0001 (4)−0.0029 (4)0.0034 (4)
O20.0299 (5)0.0231 (4)0.0214 (4)−0.0035 (4)0.0023 (4)0.0021 (4)
O30.0564 (7)0.0322 (6)0.0347 (6)−0.0113 (5)0.0045 (5)0.0112 (5)
C10.0158 (6)0.0158 (5)0.0261 (6)−0.0017 (5)−0.0029 (5)0.0001 (5)
C20.0158 (6)0.0161 (6)0.0401 (8)−0.0039 (5)−0.0027 (5)−0.0029 (5)
C30.0244 (7)0.0213 (6)0.0377 (8)−0.0010 (6)0.0033 (6)−0.0118 (6)
C40.0191 (6)0.0257 (6)0.0275 (7)−0.0051 (5)0.0011 (5)−0.0076 (6)
C50.0169 (6)0.0182 (6)0.0225 (6)−0.0011 (5)−0.0013 (5)−0.0027 (5)
C60.0186 (6)0.0176 (6)0.0186 (6)−0.0002 (5)−0.0010 (5)0.0015 (5)
C70.0179 (6)0.0156 (5)0.0236 (6)0.0019 (5)−0.0008 (5)−0.0001 (5)
C80.0275 (7)0.0179 (6)0.0227 (7)0.0003 (5)−0.0003 (5)−0.0032 (5)
C90.0259 (6)0.0215 (6)0.0198 (6)−0.0015 (6)0.0017 (5)−0.0022 (5)
C100.0193 (6)0.0181 (6)0.0253 (6)−0.0041 (5)−0.0037 (5)0.0014 (5)
C110.0176 (6)0.0179 (6)0.0289 (7)0.0018 (5)−0.0032 (5)0.0037 (5)
C120.0277 (7)0.0223 (6)0.0305 (7)−0.0047 (6)−0.0033 (6)0.0050 (5)
C130.0219 (6)0.0190 (6)0.0389 (7)0.0007 (5)−0.0039 (6)0.0003 (6)
C140.0315 (8)0.0399 (8)0.0251 (7)−0.0044 (6)0.0018 (6)−0.0099 (6)
C150.0371 (8)0.0252 (6)0.0288 (7)−0.0026 (6)−0.0048 (6)0.0075 (6)
O1—C21.2343 (17)C7—H7A1.0000
O2—C121.3692 (16)C8—C91.5369 (17)
O2—C61.4649 (14)C8—H8A0.9900
O3—C121.2012 (17)C8—H8B0.9900
C1—C101.3456 (19)C9—C101.5132 (17)
C1—C21.4914 (16)C9—H9A0.9900
C1—C51.5230 (17)C9—H9B0.9900
C2—C31.461 (2)C10—C151.5009 (18)
C3—C41.334 (2)C11—C131.3218 (18)
C3—H3A0.9500C11—C121.4808 (19)
C4—C141.4920 (19)C13—H13A0.9500
C4—C51.5225 (17)C13—H13B0.9500
C5—C61.5299 (16)C14—H14A0.9800
C5—H5A1.0000C14—H14B0.9800
C6—C71.5286 (17)C14—H14C0.9800
C6—H6A1.0000C15—H15A0.9800
C7—C111.5019 (16)C15—H15B0.9800
C7—C81.5158 (17)C15—H15C0.9800
C12—O2—C6108.55 (9)C7—C8—H8B109.5
C10—C1—C2127.08 (12)C9—C8—H8B109.5
C10—C1—C5125.92 (11)H8A—C8—H8B108.1
C2—C1—C5107.0 (1)C10—C9—C8113.74 (10)
O1—C2—C3125.31 (13)C10—C9—H9A108.8
O1—C2—C1127.97 (13)C8—C9—H9A108.8
C3—C2—C1106.68 (11)C10—C9—H9B108.8
C4—C3—C2111.72 (12)C8—C9—H9B108.8
C4—C3—H3A124.1H9A—C9—H9B107.7
C2—C3—H3A124.1C1—C10—C15123.99 (12)
C3—C4—C14126.41 (12)C1—C10—C9122.21 (11)
C3—C4—C5111.05 (12)C15—C10—C9113.80 (11)
C14—C4—C5122.40 (12)C13—C11—C12123.01 (12)
C4—C5—C1103.43 (10)C13—C11—C7131.52 (13)
C4—C5—C6114.58 (10)C12—C11—C7105.47 (10)
C1—C5—C6108.75 (9)O3—C12—O2121.46 (13)
C4—C5—H5A110.0O3—C12—C11129.70 (13)
C1—C5—H5A110.0O2—C12—C11108.82 (11)
C6—C5—H5A110.0C11—C13—H13A120.0
O2—C6—C7103.33 (9)C11—C13—H13B120.0
O2—C6—C5112.09 (9)H13A—C13—H13B120.0
C7—C6—C5113.92 (10)C4—C14—H14A109.5
O2—C6—H6A109.1C4—C14—H14B109.5
C7—C6—H6A109.1H14A—C14—H14B109.5
C5—C6—H6A109.1C4—C14—H14C109.5
C11—C7—C8119.24 (11)H14A—C14—H14C109.5
C11—C7—C6100.4 (1)H14B—C14—H14C109.5
C8—C7—C6116.17 (10)C10—C15—H15A109.5
C11—C7—H7A106.7C10—C15—H15B109.5
C8—C7—H7A106.7H15A—C15—H15B109.5
C6—C7—H7A106.7C10—C15—H15C109.5
C7—C8—C9110.86 (10)H15A—C15—H15C109.5
C7—C8—H8A109.5H15B—C15—H15C109.5
C9—C8—H8A109.5
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