Literature DB >> 22199941

3-[4-(10H-Indolo[3,2-b]quinolin-11-yl)piperazin-1-yl]propan-1-ol.

Gary S Nichol, Peda V L Boddupally, Biswanath De, Laurence H Hurley.   

Abstract

In the title compound, C(22)H(24)N(4)O, the aromatic moiety is essentially planar (r.m.s. deviation of a least-squares plane fitted through all non-H atoms = 0.0386 Å) and is rotated by 89.98 (4)° from the piperazine ring, which adopts the expected chair conformation. The propanol chain is not fully extended away from the piperazine ring. In the crystal, there are two unique hydrogen-bonding inter-actions. One is an O-H⋯N inter-action which, together with an inversion-related symmetry equivalent, forms a ring motif. The second is an N-H⋯N inter-action which links adjacent mol-ecules by means of a chain motif which propagates in the c-axis direction. Overall, a two-dimensional hydrogen-bonded structure is formed.

Entities:  

Year:  2011        PMID: 22199941      PMCID: PMC3239093          DOI: 10.1107/S1600536811050215

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on the synthesis and properties of quindolines, see: Guyen et al. (2004 ▶); Ou et al. (2007 ▶). For synthesis details, see: Bierer et al. (1998 ▶); Takeuchi et al. (1997 ▶). For the graph-set notation description of hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C22H24N4O M = 360.45 Monoclinic, a = 11.218 (2) Å b = 15.673 (3) Å c = 11.847 (2) Å β = 117.417 (2)° V = 1849.0 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 120 K 0.51 × 0.36 × 0.25 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.929, T max = 0.980 9503 measured reflections 3446 independent reflections 2678 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.03 3446 reflections 340 parameters All H-atom parameters refined Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811050215/fj2477sup1.cif Supplementary material file. DOI: 10.1107/S1600536811050215/fj2477Isup2.cdx Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050215/fj2477Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536811050215/fj2477Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H24N4OF(000) = 768
Mr = 360.45Dx = 1.295 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3837 reflections
a = 11.218 (2) Åθ = 2.3–28.0°
b = 15.673 (3) ŵ = 0.08 mm1
c = 11.847 (2) ÅT = 120 K
β = 117.417 (2)°Prism, dark brown
V = 1849.0 (6) Å30.51 × 0.36 × 0.25 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3446 independent reflections
Radiation source: sealed tube2678 reflections with I > 2σ(I)
graphiteRint = 0.027
thin–slice ω scansθmax = 25.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→13
Tmin = 0.929, Tmax = 0.980k = −18→18
9503 measured reflectionsl = −14→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: difference Fourier map
wR(F2) = 0.108All H-atom parameters refined
S = 1.03w = 1/[σ2(Fo2) + (0.0523P)2 + 0.7097P] where P = (Fo2 + 2Fc2)/3
3446 reflections(Δ/σ)max < 0.001
340 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1.06789 (12)0.50790 (7)0.41013 (11)0.0267 (3)
H1O1.109 (2)0.5355 (16)0.493 (2)0.068 (8)*
N10.37444 (13)0.24064 (9)0.40400 (13)0.0220 (3)
H1N0.3956 (18)0.2294 (11)0.3422 (18)0.028 (5)*
N20.42965 (13)0.31976 (8)0.70450 (12)0.0208 (3)
N30.61399 (13)0.34403 (8)0.45703 (12)0.0209 (3)
N40.79071 (12)0.39539 (8)0.35679 (12)0.0210 (3)
C10.55854 (15)0.33858 (10)0.54422 (15)0.0198 (3)
C20.44663 (15)0.28845 (10)0.51126 (15)0.0198 (3)
C30.26853 (15)0.20239 (10)0.41345 (15)0.0207 (3)
C40.16905 (16)0.14933 (10)0.32651 (16)0.0227 (4)
H40.1712 (16)0.1326 (11)0.2482 (17)0.024 (4)*
C50.06949 (16)0.12188 (11)0.35618 (16)0.0242 (4)
H50.0003 (18)0.0838 (12)0.2954 (17)0.028 (5)*
C60.06798 (16)0.14638 (11)0.46923 (16)0.0239 (4)
H6−0.0062 (17)0.1263 (11)0.4887 (16)0.027 (5)*
C70.16832 (16)0.19778 (10)0.55680 (16)0.0221 (4)
H70.1694 (16)0.2136 (10)0.6364 (16)0.020 (4)*
C80.26991 (15)0.22583 (10)0.52887 (15)0.0199 (3)
C90.38517 (15)0.28109 (10)0.59321 (15)0.0193 (3)
C100.54068 (15)0.37040 (10)0.74025 (15)0.0202 (3)
C110.58953 (16)0.41338 (11)0.85823 (15)0.0249 (4)
H110.5411 (16)0.4042 (10)0.9084 (15)0.016 (4)*
C120.69713 (17)0.46688 (11)0.89926 (16)0.0275 (4)
H120.7267 (16)0.4987 (11)0.9796 (17)0.023 (4)*
C130.76274 (17)0.47893 (11)0.82389 (17)0.0264 (4)
H130.839 (2)0.5184 (13)0.8534 (19)0.038 (5)*
C140.72030 (16)0.43782 (10)0.70995 (16)0.0226 (4)
H140.7664 (17)0.4464 (11)0.6598 (16)0.026 (5)*
C150.60766 (15)0.38205 (10)0.66306 (15)0.0199 (3)
C160.60048 (17)0.42857 (11)0.39894 (16)0.0240 (4)
H16A0.6495 (17)0.4746 (11)0.4637 (16)0.023 (4)*
H16B0.5062 (19)0.4439 (11)0.3571 (17)0.028 (5)*
C170.65126 (16)0.42647 (12)0.30064 (16)0.0244 (4)
H17A0.6487 (17)0.4852 (12)0.2682 (16)0.025 (5)*
H17B0.5923 (17)0.3887 (11)0.2266 (16)0.024 (4)*
C180.79162 (17)0.30740 (10)0.39967 (17)0.0237 (4)
H18B0.8840 (17)0.2845 (11)0.4334 (16)0.021 (4)*
H18A0.7292 (19)0.2708 (12)0.3271 (18)0.034 (5)*
C190.74808 (17)0.30570 (11)0.50322 (16)0.0231 (4)
H19A0.8171 (18)0.3353 (11)0.5797 (17)0.028 (5)*
H19B0.7437 (17)0.2446 (12)0.5249 (16)0.023 (4)*
C200.83818 (17)0.40109 (11)0.26025 (16)0.0251 (4)
H20A0.7803 (17)0.3667 (11)0.1848 (17)0.023 (4)*
H20B0.8255 (16)0.4632 (11)0.2318 (15)0.017 (4)*
C210.98381 (17)0.37398 (11)0.30578 (17)0.0274 (4)
H21A1.0040 (17)0.3868 (12)0.2342 (17)0.030 (5)*
H21B0.9945 (17)0.3105 (12)0.3171 (17)0.029 (5)*
C221.08386 (17)0.41778 (11)0.42631 (17)0.0266 (4)
H22A1.1778 (18)0.4023 (11)0.4449 (16)0.024 (4)*
H22B1.0721 (16)0.3979 (11)0.5050 (16)0.023 (4)*
U11U22U33U12U13U23
O0.0287 (6)0.0227 (6)0.0286 (7)−0.0009 (5)0.0130 (5)0.0010 (5)
N10.0230 (7)0.0257 (8)0.0216 (7)−0.0035 (6)0.0140 (6)−0.0041 (6)
N20.0214 (7)0.0218 (7)0.0204 (7)0.0013 (5)0.0105 (6)0.0006 (6)
N30.0204 (7)0.0222 (7)0.0239 (7)0.0000 (5)0.0135 (6)0.0012 (6)
N40.0209 (7)0.0208 (7)0.0244 (7)0.0006 (5)0.0131 (6)0.0014 (5)
C10.0193 (8)0.0200 (8)0.0213 (8)0.0031 (6)0.0104 (6)0.0024 (6)
C20.0200 (8)0.0198 (8)0.0195 (8)0.0021 (6)0.0091 (7)−0.0004 (6)
C30.0194 (8)0.0198 (8)0.0237 (8)0.0014 (6)0.0106 (7)0.0019 (6)
C40.0242 (8)0.0222 (8)0.0216 (8)0.0006 (7)0.0106 (7)−0.0010 (7)
C50.0199 (8)0.0212 (8)0.0275 (9)−0.0010 (7)0.0074 (7)0.0011 (7)
C60.0196 (8)0.0234 (9)0.0305 (9)0.0000 (7)0.0131 (7)0.0030 (7)
C70.0222 (8)0.0225 (9)0.0232 (8)0.0012 (6)0.0118 (7)0.0017 (7)
C80.0201 (8)0.0188 (8)0.0213 (8)0.0020 (6)0.0099 (7)0.0017 (6)
C90.0197 (8)0.0186 (8)0.0210 (8)0.0020 (6)0.0105 (7)0.0010 (6)
C100.0191 (8)0.0181 (8)0.0226 (8)0.0031 (6)0.0089 (7)0.0019 (6)
C110.0252 (8)0.0268 (9)0.0243 (9)0.0009 (7)0.0127 (7)−0.0005 (7)
C120.0273 (9)0.0281 (9)0.0239 (9)−0.0009 (7)0.0090 (7)−0.0067 (7)
C130.0208 (8)0.0259 (9)0.0297 (9)−0.0020 (7)0.0092 (7)−0.0034 (7)
C140.0194 (8)0.0221 (9)0.0271 (9)0.0018 (6)0.0115 (7)0.0003 (7)
C150.0184 (8)0.0183 (8)0.0228 (8)0.0042 (6)0.0093 (7)0.0024 (6)
C160.0204 (8)0.0255 (9)0.0266 (9)0.0041 (7)0.0113 (7)0.0056 (7)
C170.0233 (9)0.0271 (9)0.0243 (9)0.0012 (7)0.0122 (7)0.0049 (7)
C180.0255 (9)0.0199 (8)0.0314 (9)−0.0002 (7)0.0178 (8)−0.0014 (7)
C190.0240 (8)0.0193 (9)0.0304 (9)0.0032 (7)0.0164 (8)0.0040 (7)
C200.0295 (9)0.0270 (10)0.0235 (9)−0.0034 (7)0.0162 (8)−0.0020 (7)
C210.0331 (10)0.0247 (9)0.0341 (10)−0.0005 (7)0.0239 (8)−0.0013 (8)
C220.0260 (9)0.0223 (9)0.0357 (10)0.0026 (7)0.0178 (8)0.0052 (7)
O—H1O0.97 (3)C10—C151.438 (2)
O—C221.426 (2)C11—H110.984 (16)
N1—H1N0.885 (19)C11—C121.362 (2)
N1—C21.373 (2)C12—H120.987 (18)
N1—C31.381 (2)C12—C131.407 (2)
N2—C91.322 (2)C13—H130.98 (2)
N2—C101.369 (2)C13—C141.368 (2)
N3—C11.433 (2)C14—H140.960 (18)
N3—C161.468 (2)C14—C151.422 (2)
N3—C191.471 (2)C16—H16A1.011 (18)
N4—C171.473 (2)C16—H16B0.969 (19)
N4—C181.468 (2)C16—C171.514 (2)
N4—C201.470 (2)C17—H17A0.992 (18)
C1—C21.376 (2)C17—H17B1.011 (17)
C1—C151.427 (2)C18—H18B0.991 (17)
C2—C91.431 (2)C18—H18A1.00 (2)
C3—C41.393 (2)C18—C191.515 (2)
C3—C81.409 (2)C19—H19A0.995 (18)
C4—H40.976 (17)C19—H19B0.999 (18)
C4—C51.385 (2)C20—H20A0.988 (18)
C5—H50.981 (18)C20—H20B1.019 (17)
C5—C61.401 (2)C20—C211.526 (2)
C6—H61.011 (18)C21—H21A0.994 (19)
C6—C71.385 (2)C21—H21B1.004 (19)
C7—H70.969 (17)C21—C221.515 (2)
C7—C81.396 (2)C22—H22A1.002 (18)
C8—C91.448 (2)C22—H22B1.048 (17)
C10—C111.415 (2)
H1O—O—C22109.5 (14)H13—C13—C14120.0 (12)
H1N—N1—C2127.3 (12)C13—C14—H14120.2 (11)
H1N—N1—C3123.3 (12)C13—C14—C15121.17 (16)
C2—N1—C3108.97 (13)H14—C14—C15118.6 (10)
C9—N2—C10116.48 (13)C1—C15—C10119.30 (14)
C1—N3—C16113.97 (12)C1—C15—C14123.29 (14)
C1—N3—C19114.61 (12)C10—C15—C14117.40 (14)
C16—N3—C19114.20 (12)N3—C16—H16A112.7 (10)
C17—N4—C18107.68 (13)N3—C16—H16B108.4 (11)
C17—N4—C20108.57 (12)N3—C16—C17110.28 (14)
C18—N4—C20112.26 (13)H16A—C16—H16B107.2 (14)
N3—C1—C2118.14 (14)H16A—C16—C17109.4 (10)
N3—C1—C15125.75 (14)H16B—C16—C17108.7 (10)
C2—C1—C15116.10 (14)N4—C17—C16110.94 (13)
N1—C2—C1130.28 (15)N4—C17—H17A108.5 (10)
N1—C2—C9108.71 (13)N4—C17—H17B109.4 (9)
C1—C2—C9121.00 (14)C16—C17—H17A108.9 (10)
N1—C3—C4128.75 (15)C16—C17—H17B110.6 (10)
N1—C3—C8109.88 (14)H17A—C17—H17B108.4 (14)
C4—C3—C8121.36 (15)N4—C18—H18B108.6 (10)
C3—C4—H4120.1 (10)N4—C18—H18A110.5 (11)
C3—C4—C5117.59 (15)N4—C18—C19110.06 (13)
H4—C4—C5122.3 (10)H18B—C18—H18A109.1 (14)
C4—C5—H5117.4 (10)H18B—C18—C19109.5 (10)
C4—C5—C6121.58 (15)H18A—C18—C19109.0 (11)
H5—C5—C6121.0 (10)N3—C19—C18110.32 (14)
C5—C6—H6120.4 (10)N3—C19—H19A112.5 (10)
C5—C6—C7120.82 (15)N3—C19—H19B108.9 (10)
H6—C6—C7118.7 (10)C18—C19—H19A108.9 (10)
C6—C7—H7121.3 (10)C18—C19—H19B107.3 (10)
C6—C7—C8118.45 (15)H19A—C19—H19B108.8 (14)
H7—C7—C8120.3 (10)N4—C20—H20A110.4 (10)
C3—C8—C7120.17 (14)N4—C20—H20B105.7 (9)
C3—C8—C9105.96 (13)N4—C20—C21114.87 (14)
C7—C8—C9133.82 (15)H20A—C20—H20B106.8 (13)
N2—C9—C2124.13 (14)H20A—C20—C21108.6 (10)
N2—C9—C8129.39 (14)H20B—C20—C21110.3 (9)
C2—C9—C8106.48 (13)C20—C21—H21A105.6 (10)
N2—C10—C11117.70 (14)C20—C21—H21B111.4 (10)
N2—C10—C15122.98 (14)C20—C21—C22114.52 (14)
C11—C10—C15119.32 (14)H21A—C21—H21B104.8 (14)
C10—C11—H11117.2 (9)H21A—C21—C22110.6 (10)
C10—C11—C12121.46 (16)H21B—C21—C22109.4 (10)
H11—C11—C12121.3 (9)O—C22—C21109.25 (14)
C11—C12—H12120.3 (10)O—C22—H22A108.9 (10)
C11—C12—C13119.52 (16)O—C22—H22B110.8 (9)
H12—C12—C13120.1 (10)C21—C22—H22A110.2 (10)
C12—C13—H13118.9 (12)C21—C22—H22B111.2 (9)
C12—C13—C14121.11 (16)H22A—C22—H22B106.4 (13)
C16—N3—C1—C2112.37 (16)C7—C8—C9—C2−176.76 (17)
C16—N3—C1—C15−66.45 (19)C9—N2—C10—C11179.26 (14)
C19—N3—C1—C2−113.44 (16)C9—N2—C10—C15−0.1 (2)
C19—N3—C1—C1567.74 (19)N2—C10—C11—C12−178.11 (15)
C3—N1—C2—C1−178.98 (16)C15—C10—C11—C121.3 (2)
C3—N1—C2—C9−0.12 (17)C10—C11—C12—C13−1.0 (3)
N3—C1—C2—N1−0.4 (2)C11—C12—C13—C140.0 (3)
N3—C1—C2—C9−179.17 (13)C12—C13—C14—C150.6 (3)
C15—C1—C2—N1178.51 (15)C13—C14—C15—C1179.20 (15)
C15—C1—C2—C9−0.2 (2)C13—C14—C15—C10−0.2 (2)
C2—N1—C3—C4179.23 (16)N3—C1—C15—C10179.73 (14)
C2—N1—C3—C80.45 (18)N3—C1—C15—C140.3 (2)
N1—C3—C4—C5−177.20 (15)C2—C1—C15—C100.9 (2)
C8—C3—C4—C51.5 (2)C2—C1—C15—C14−178.53 (14)
C3—C4—C5—C60.1 (2)N2—C10—C15—C1−0.8 (2)
C4—C5—C6—C7−1.4 (2)N2—C10—C15—C14178.69 (14)
C5—C6—C7—C81.1 (2)C11—C10—C15—C1179.88 (14)
C6—C7—C8—C30.5 (2)C11—C10—C15—C14−0.7 (2)
C6—C7—C8—C9177.43 (16)C1—N3—C16—C17−175.37 (13)
N1—C3—C8—C7177.12 (14)C19—N3—C16—C1750.25 (18)
N1—C3—C8—C9−0.60 (17)C18—N4—C17—C1662.64 (17)
C4—C3—C8—C7−1.8 (2)C20—N4—C17—C16−175.58 (14)
C4—C3—C8—C9−179.48 (14)N3—C16—C17—N4−55.76 (18)
C10—N2—C9—C20.8 (2)C17—N4—C18—C19−63.16 (17)
C10—N2—C9—C8−178.45 (15)C20—N4—C18—C19177.38 (13)
N1—C2—C9—N2−179.67 (14)C1—N3—C19—C18174.66 (13)
N1—C2—C9—C8−0.25 (17)C16—N3—C19—C18−51.25 (18)
C1—C2—C9—N2−0.7 (2)N4—C18—C19—N357.42 (18)
C1—C2—C9—C8178.74 (14)C17—N4—C20—C21177.89 (14)
C3—C8—C9—N2179.89 (15)C18—N4—C20—C21−63.17 (18)
C3—C8—C9—C20.51 (17)N4—C20—C21—C22−52.4 (2)
C7—C8—C9—N22.6 (3)C20—C21—C22—O−53.75 (19)
D—H···AD—HH···AD···AD—H···A
O—H1O···N4i0.97 (3)1.94 (3)2.8990 (18)169 (2)
N1—H1N···N2ii0.885 (19)1.99 (2)2.866 (2)168.4 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O—H1O⋯N4i0.97 (3)1.94 (3)2.8990 (18)169 (2)
N1—H1N⋯N2ii0.885 (19)1.99 (2)2.866 (2)168.4 (17)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Synthesis and evaluation of analogues of 10H-indolo[3,2-b]quinoline as G-quadruplex stabilising ligands and potential inhibitors of the enzyme telomerase.

Authors:  Berangere Guyen; Christoph M Schultes; Pascale Hazel; John Mann; Stephen Neidle
Journal:  Org Biomol Chem       Date:  2004-03-10       Impact factor: 3.876

2.  Stabilization of G-quadruplex DNA and down-regulation of oncogene c-myc by quindoline derivatives.

Authors:  Tian-Miao Ou; Yu-Jing Lu; Chi Zhang; Zhi-Shu Huang; Xiao-Dong Wang; Jia-Heng Tan; Yuan Chen; Dik-Lung Ma; Kwok-Yin Wong; Johnny Cheuk-On Tang; Albert Sun-Chi Chan; Lian-Quan Gu
Journal:  J Med Chem       Date:  2007-03-09       Impact factor: 7.446

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and antitumor activity of fused quinoline derivatives. V. Methylindolo[3,2-b]quinolines.

Authors:  Y Takeuchi; M Kitaomo; M R Chang; S Shirasaka; C Shimamura; Y Okuno; M Yamato; T Harayama
Journal:  Chem Pharm Bull (Tokyo)       Date:  1997-12       Impact factor: 1.645

5.  Antihyperglycemic activities of cryptolepine analogues: an ethnobotanical lead structure isolated from Cryptolepis sanguinolenta.

Authors:  D E Bierer; L G Dubenko; P Zhang; Q Lu; P A Imbach; A W Garofalo; P W Phuan; D M Fort; J Litvak; R E Gerber; B Sloan; J Luo; R Cooper; G M Reaven
Journal:  J Med Chem       Date:  1998-07-16       Impact factor: 7.446

  5 in total

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