Literature DB >> 22199897

1-(5,7-Dihy-droxy-2,2-dimethylchroman-6-yl)ethanone.

Matthew P Akerman1, Zimbili Mkhize, Fanie R van Heerden.   

Abstract

In the title mol-ecule, C(13)H(16)O(4), the pyran ring is in a half-chair conformation. There is an intra-molecular hydrogen bond involving the ketone O atom and an H atom of a phenol group which forms an S(6) ring. The ketone O atom is also involved in an inter-molecular hydrogen bond with a different phenolic H atom of a symmetry-related mol-ecule, forming C(6) chains along the c-axis direction.

Entities:  

Year:  2011        PMID: 22199897      PMCID: PMC3239049          DOI: 10.1107/S1600536811047982

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of the title compound, see: Kraus et al. (2011 ▶); Basabe et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For a related structure, see: Chakkaravarthi et al. (2007 ▶).

Experimental

Crystal data

C13H16O4 M = 236.26 Tetragonal, a = 10.5677 (2) Å c = 21.4244 (5) Å V = 2392.6 (1) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.6 × 0.4 × 0.4 mm

Data collection

Oxford Diffraction Xcalibur 2 CCD diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.955, T max = 0.962 26011 measured reflections 2366 independent reflections 2046 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.091 S = 1.08 2366 reflections 166 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.11 e Å−3 Absolute structure: Flack (1983 ▶), 931 Friedel pairs Flack parameter: 0.7 (11) Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: WinGX (Farrugia, 1999 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811047982/lh5372sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047982/lh5372Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047982/lh5372Isup3.mol Supplementary material file. DOI: 10.1107/S1600536811047982/lh5372Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16O4Dx = 1.312 Mg m3
Mr = 236.26Mo Kα radiation, λ = 0.71073 Å
Tetragonal, P41212Cell parameters from 2366 reflections
Hall symbol: P 4abw 2nwθ = 2.9–26.0°
a = 10.5677 (2) ŵ = 0.10 mm1
c = 21.4244 (5) ÅT = 298 K
V = 2392.6 (1) Å3Needle, colourless
Z = 80.6 × 0.4 × 0.4 mm
F(000) = 1008
Oxford Diffraction Xcalibur 2 CCD diffractometer2366 independent reflections
Radiation source: fine-focus sealed tube2046 reflections with I > 2σ(I)
graphiteRint = 0.047
Detector resolution: 8.4190 pixels mm-1θmax = 26.0°, θmin = 2.9°
ω scans at fixed θ anglesh = −13→13
Absorption correction: multi-scan (SORTAV; Blessing, 1995)k = −13→13
Tmin = 0.955, Tmax = 0.962l = −26→26
26011 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.032w = 1/[σ2(Fo2) + (0.0593P)2 + 0.0612P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.091(Δ/σ)max = 0.001
S = 1.08Δρmax = 0.12 e Å3
2366 reflectionsΔρmin = −0.11 e Å3
166 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0094 (18)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 931 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.7 (11)
Experimental. 1H NMR (400 MHz, CD3OD) 1.31 (2x 3H, s, C(CH3)2), 1.78 (2H, t, J = 6.7 Hz, CH2), 2.55 (2H, t, J = 6.7 Hz, CH2), 2.62 (3H, s, COCH3), 5.77 (1H, s, ArH); 13C NMR 15.6 (C(CH3)2), 25.6 (2 × CH2), 31.3 (C(CH3)2), 31.8 (COCH3), 75.3 (C(CH3)2, 94.5 (C-5), 99.9 (C-1), 104.2 (C-3), 160.0, 160.9, 163.3 (C-2,4,6), 203.4 (COCH3); ESITOFMS, m/z 259.0945 [M+Na]+ (calc. for C13H16NaO4 259.0946); IR (KBr) υ 2961 2918 2872 1654 1611 1433 1159 cm-1.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H1021.1657 (18)0.6538 (18)0.1786 (9)0.064 (5)*
H1030.794 (2)0.877 (2)0.3250 (10)0.075 (7)*
O10.94129 (10)0.98280 (11)0.09038 (5)0.0540 (3)
O21.11831 (12)0.66838 (11)0.21655 (5)0.0563 (3)
C90.93675 (14)0.92341 (14)0.14598 (6)0.0410 (3)
O30.77624 (12)0.92148 (12)0.29235 (6)0.0619 (3)
C71.03346 (13)0.76254 (13)0.20884 (7)0.0390 (3)
O40.87361 (12)0.75511 (12)0.36008 (5)0.0611 (4)
C81.02635 (13)0.82754 (14)0.15389 (7)0.0403 (3)
H81.08150.80790.12150.048*
C40.85141 (14)0.95417 (14)0.19248 (7)0.0452 (3)
C60.95010 (13)0.79073 (13)0.25928 (6)0.0397 (3)
C120.95429 (15)0.72843 (14)0.31906 (7)0.0468 (4)
C50.86024 (13)0.88832 (13)0.24823 (7)0.0427 (3)
C10.83994 (17)1.07167 (15)0.07346 (8)0.0553 (4)
C20.79788 (18)1.14369 (17)0.12997 (8)0.0657 (5)
H2A0.72821.19880.11860.079*
H2B0.86701.19660.14440.079*
C30.75608 (18)1.05776 (18)0.18283 (9)0.0670 (5)
H3A0.74741.10670.22090.080*
H3B0.67431.02110.17300.080*
C131.0503 (2)0.6319 (2)0.33569 (9)0.0717 (6)
H13A1.03840.60620.37830.108*
H13B1.13340.66710.33080.108*
H13C1.04120.55980.30880.108*
C100.9031 (2)1.15856 (19)0.02626 (9)0.0774 (6)
H10A0.97461.19910.04530.116*
H10B0.84371.22160.01270.116*
H10C0.93071.1098−0.00900.116*
C110.7364 (2)0.9942 (2)0.04359 (11)0.0801 (6)
H11A0.76870.95370.00680.120*
H11B0.66721.04850.03250.120*
H11C0.70760.93110.07250.120*
U11U22U33U12U13U23
O10.0605 (7)0.0550 (7)0.0466 (6)0.0166 (5)−0.0064 (5)0.0060 (5)
O20.0642 (7)0.0578 (7)0.0469 (6)0.0220 (6)0.0037 (5)0.0064 (5)
C90.0420 (8)0.0391 (8)0.0418 (7)0.0004 (6)−0.0102 (6)−0.0035 (6)
O30.0626 (7)0.0610 (8)0.0621 (8)0.0078 (6)0.0188 (7)−0.0060 (6)
C70.0381 (7)0.0363 (7)0.0427 (7)0.0005 (6)−0.0055 (6)−0.0035 (6)
O40.0725 (8)0.0614 (7)0.0495 (6)−0.0088 (6)0.0142 (6)0.0021 (5)
C80.0384 (7)0.0433 (8)0.0393 (7)0.0037 (6)−0.0016 (5)−0.0030 (6)
C40.0408 (8)0.0400 (8)0.0548 (8)0.0043 (6)−0.0045 (7)−0.0072 (6)
C60.0425 (8)0.0359 (7)0.0406 (7)−0.0070 (6)−0.0024 (6)−0.0052 (6)
C120.0533 (9)0.0437 (8)0.0433 (8)−0.0129 (7)−0.0015 (7)−0.0023 (7)
C50.0388 (8)0.0403 (7)0.0492 (8)−0.0038 (6)0.0028 (6)−0.0100 (6)
C10.0624 (10)0.0412 (8)0.0622 (10)0.0110 (7)−0.0207 (8)0.0042 (7)
C20.0660 (11)0.0489 (9)0.0822 (12)0.0191 (9)−0.0169 (10)−0.0018 (9)
C30.0609 (11)0.0643 (11)0.0758 (12)0.0237 (9)−0.0025 (9)−0.0044 (9)
C130.0795 (13)0.0825 (14)0.0532 (10)0.0105 (10)0.0037 (9)0.0208 (9)
C100.0952 (15)0.0560 (11)0.0811 (13)0.0109 (11)−0.0145 (11)0.0178 (10)
C110.0806 (14)0.0621 (11)0.0975 (15)0.0070 (11)−0.0408 (12)−0.0017 (11)
O1—C91.3471 (18)C1—C21.497 (2)
O1—C11.4699 (18)C1—C111.509 (3)
O2—C71.3496 (17)C1—C101.520 (3)
O2—H1020.97 (2)C2—C31.517 (3)
C9—C41.383 (2)C2—H2A0.9700
C9—C81.397 (2)C2—H2B0.9700
O3—C51.3432 (18)C3—H3A0.9700
O3—H1030.86 (2)C3—H3B0.9700
C7—C81.365 (2)C13—H13A0.9600
C7—C61.426 (2)C13—H13B0.9600
O4—C121.2566 (19)C13—H13C0.9600
C8—H80.9300C10—H10A0.9600
C4—C51.386 (2)C10—H10B0.9600
C4—C31.502 (2)C10—H10C0.9600
C6—C51.422 (2)C11—H11A0.9600
C6—C121.441 (2)C11—H11B0.9600
C12—C131.482 (2)C11—H11C0.9600
C9—O1—C1119.33 (12)C1—C2—C3112.68 (15)
C7—O2—H102111.0 (11)C1—C2—H2A109.1
O1—C9—C4123.42 (14)C3—C2—H2A109.1
O1—C9—C8114.90 (12)C1—C2—H2B109.1
C4—C9—C8121.68 (13)C3—C2—H2B109.1
C5—O3—H103106.8 (14)H2A—C2—H2B107.8
O2—C7—C8120.88 (13)C4—C3—C2110.10 (15)
O2—C7—C6118.15 (13)C4—C3—H3A109.6
C8—C7—C6120.97 (13)C2—C3—H3A109.6
C7—C8—C9120.46 (13)C4—C3—H3B109.6
C7—C8—H8119.8C2—C3—H3B109.6
C9—C8—H8119.8H3A—C3—H3B108.2
C9—C4—C5117.34 (13)C12—C13—H13A109.5
C9—C4—C3120.64 (15)C12—C13—H13B109.5
C5—C4—C3121.99 (14)H13A—C13—H13B109.5
C5—C6—C7115.98 (13)C12—C13—H13C109.5
C5—C6—C12120.00 (13)H13A—C13—H13C109.5
C7—C6—C12124.01 (13)H13B—C13—H13C109.5
O4—C12—C6119.89 (15)C1—C10—H10A109.5
O4—C12—C13116.79 (14)C1—C10—H10B109.5
C6—C12—C13123.32 (14)H10A—C10—H10B109.5
O3—C5—C4115.54 (14)C1—C10—H10C109.5
O3—C5—C6120.90 (14)H10A—C10—H10C109.5
C4—C5—C6123.56 (13)H10B—C10—H10C109.5
O1—C1—C2109.98 (12)C1—C11—H11A109.5
O1—C1—C11106.62 (13)C1—C11—H11B109.5
C2—C1—C11113.80 (18)H11A—C11—H11B109.5
O1—C1—C10103.32 (15)C1—C11—H11C109.5
C2—C1—C10111.17 (15)H11A—C11—H11C109.5
C11—C1—C10111.33 (16)H11B—C11—H11C109.5
C1—O1—C9—C4−9.6 (2)C9—C4—C5—O3179.59 (12)
C1—O1—C9—C8170.94 (13)C3—C4—C5—O31.4 (2)
O2—C7—C8—C9178.90 (13)C9—C4—C5—C6−1.1 (2)
C6—C7—C8—C90.0 (2)C3—C4—C5—C6−179.29 (14)
O1—C9—C8—C7178.31 (12)C7—C6—C5—O3179.24 (13)
C4—C9—C8—C7−1.2 (2)C12—C6—C5—O3−1.8 (2)
O1—C9—C4—C5−177.76 (13)C7—C6—C5—C40.0 (2)
C8—C9—C4—C51.7 (2)C12—C6—C5—C4178.93 (13)
O1—C9—C4—C30.5 (2)C9—O1—C1—C236.82 (19)
C8—C9—C4—C3179.93 (15)C9—O1—C1—C11−87.00 (18)
O2—C7—C6—C5−178.34 (12)C9—O1—C1—C10155.56 (14)
C8—C7—C6—C50.6 (2)O1—C1—C2—C3−55.9 (2)
O2—C7—C6—C122.7 (2)C11—C1—C2—C363.6 (2)
C8—C7—C6—C12−178.32 (13)C10—C1—C2—C3−169.70 (14)
C5—C6—C12—O44.3 (2)C9—C4—C3—C2−19.4 (2)
C7—C6—C12—O4−176.84 (14)C5—C4—C3—C2158.76 (15)
C5—C6—C12—C13−175.88 (16)C1—C2—C3—C447.0 (2)
C7—C6—C12—C133.0 (2)
D—H···AD—HH···AD···AD—H···A
O2—H102···O4i0.97 (2)1.77 (2)2.737 (2)179 (1)
O3—H103···O40.86 (2)1.71 (2)2.501 (2)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H102⋯O4i0.97 (2)1.77 (2)2.737 (2)179 (1)
O3—H103⋯O40.86 (2)1.71 (2)2.501 (2)151 (2)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Prenylflavonoids and prenyl/alkyl-phloroacetophenones: synthesis and antitumour biological evaluation.

Authors:  P Basabe; M de Román; I S Marcos; D Diez; A Blanco; O Bodero; F Mollinedo; B G Sierra; J G Urones
Journal:  Eur J Med Chem       Date:  2010-06-23       Impact factor: 6.514

4.  Synthesis of chroman aldehydes that inhibit HIV.

Authors:  George A Kraus; John Mengwasser; Wendy Maury; ChoonSeok Oh
Journal:  Bioorg Med Chem Lett       Date:  2011-01-14       Impact factor: 2.823

  4 in total

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