| Literature DB >> 22199897 |
Matthew P Akerman1, Zimbili Mkhize, Fanie R van Heerden.
Abstract
In the title mol-ecule, C(13)H(16)O(4), the pyran ring is in a half-chair conformation. There is an intra-molecular hydrogen bond involving the ketone O atom and an H atom of a phenol group which forms an S(6) ring. The ketone O atom is also involved in an inter-molecular hydrogen bond with a different phenolic H atom of a symmetry-related mol-ecule, forming C(6) chains along the c-axis direction.Entities:
Year: 2011 PMID: 22199897 PMCID: PMC3239049 DOI: 10.1107/S1600536811047982
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16O4 | |
| Mo | |
| Tetragonal, | Cell parameters from 2366 reflections |
| Hall symbol: P 4abw 2nw | θ = 2.9–26.0° |
| µ = 0.10 mm−1 | |
| Needle, colourless | |
| 0.6 × 0.4 × 0.4 mm | |
| Oxford Diffraction Xcalibur 2 CCD diffractometer | 2366 independent reflections |
| Radiation source: fine-focus sealed tube | 2046 reflections with |
| graphite | |
| Detector resolution: 8.4190 pixels mm-1 | θmax = 26.0°, θmin = 2.9° |
| ω scans at fixed θ angles | |
| Absorption correction: multi-scan ( | |
| 26011 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.12 e Å−3 | |
| 2366 reflections | Δρmin = −0.11 e Å−3 |
| 166 parameters | Extinction correction: |
| 0 restraints | Extinction coefficient: 0.0094 (18) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 931 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.7 (11) |
| Experimental. 1H NMR (400 MHz, CD3OD) 1.31
(2 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| H102 | 1.1657 (18) | 0.6538 (18) | 0.1786 (9) | 0.064 (5)* | |
| H103 | 0.794 (2) | 0.877 (2) | 0.3250 (10) | 0.075 (7)* | |
| O1 | 0.94129 (10) | 0.98280 (11) | 0.09038 (5) | 0.0540 (3) | |
| O2 | 1.11831 (12) | 0.66838 (11) | 0.21655 (5) | 0.0563 (3) | |
| C9 | 0.93675 (14) | 0.92341 (14) | 0.14598 (6) | 0.0410 (3) | |
| O3 | 0.77624 (12) | 0.92148 (12) | 0.29235 (6) | 0.0619 (3) | |
| C7 | 1.03346 (13) | 0.76254 (13) | 0.20884 (7) | 0.0390 (3) | |
| O4 | 0.87361 (12) | 0.75511 (12) | 0.36008 (5) | 0.0611 (4) | |
| C8 | 1.02635 (13) | 0.82754 (14) | 0.15389 (7) | 0.0403 (3) | |
| H8 | 1.0815 | 0.8079 | 0.1215 | 0.048* | |
| C4 | 0.85141 (14) | 0.95417 (14) | 0.19248 (7) | 0.0452 (3) | |
| C6 | 0.95010 (13) | 0.79073 (13) | 0.25928 (6) | 0.0397 (3) | |
| C12 | 0.95429 (15) | 0.72843 (14) | 0.31906 (7) | 0.0468 (4) | |
| C5 | 0.86024 (13) | 0.88832 (13) | 0.24823 (7) | 0.0427 (3) | |
| C1 | 0.83994 (17) | 1.07167 (15) | 0.07346 (8) | 0.0553 (4) | |
| C2 | 0.79788 (18) | 1.14369 (17) | 0.12997 (8) | 0.0657 (5) | |
| H2A | 0.7282 | 1.1988 | 0.1186 | 0.079* | |
| H2B | 0.8670 | 1.1966 | 0.1444 | 0.079* | |
| C3 | 0.75608 (18) | 1.05776 (18) | 0.18283 (9) | 0.0670 (5) | |
| H3A | 0.7474 | 1.1067 | 0.2209 | 0.080* | |
| H3B | 0.6743 | 1.0211 | 0.1730 | 0.080* | |
| C13 | 1.0503 (2) | 0.6319 (2) | 0.33569 (9) | 0.0717 (6) | |
| H13A | 1.0384 | 0.6062 | 0.3783 | 0.108* | |
| H13B | 1.1334 | 0.6671 | 0.3308 | 0.108* | |
| H13C | 1.0412 | 0.5598 | 0.3088 | 0.108* | |
| C10 | 0.9031 (2) | 1.15856 (19) | 0.02626 (9) | 0.0774 (6) | |
| H10A | 0.9746 | 1.1991 | 0.0453 | 0.116* | |
| H10B | 0.8437 | 1.2216 | 0.0127 | 0.116* | |
| H10C | 0.9307 | 1.1098 | −0.0090 | 0.116* | |
| C11 | 0.7364 (2) | 0.9942 (2) | 0.04359 (11) | 0.0801 (6) | |
| H11A | 0.7687 | 0.9537 | 0.0068 | 0.120* | |
| H11B | 0.6672 | 1.0485 | 0.0325 | 0.120* | |
| H11C | 0.7076 | 0.9311 | 0.0725 | 0.120* |
| O1 | 0.0605 (7) | 0.0550 (7) | 0.0466 (6) | 0.0166 (5) | −0.0064 (5) | 0.0060 (5) |
| O2 | 0.0642 (7) | 0.0578 (7) | 0.0469 (6) | 0.0220 (6) | 0.0037 (5) | 0.0064 (5) |
| C9 | 0.0420 (8) | 0.0391 (8) | 0.0418 (7) | 0.0004 (6) | −0.0102 (6) | −0.0035 (6) |
| O3 | 0.0626 (7) | 0.0610 (8) | 0.0621 (8) | 0.0078 (6) | 0.0188 (7) | −0.0060 (6) |
| C7 | 0.0381 (7) | 0.0363 (7) | 0.0427 (7) | 0.0005 (6) | −0.0055 (6) | −0.0035 (6) |
| O4 | 0.0725 (8) | 0.0614 (7) | 0.0495 (6) | −0.0088 (6) | 0.0142 (6) | 0.0021 (5) |
| C8 | 0.0384 (7) | 0.0433 (8) | 0.0393 (7) | 0.0037 (6) | −0.0016 (5) | −0.0030 (6) |
| C4 | 0.0408 (8) | 0.0400 (8) | 0.0548 (8) | 0.0043 (6) | −0.0045 (7) | −0.0072 (6) |
| C6 | 0.0425 (8) | 0.0359 (7) | 0.0406 (7) | −0.0070 (6) | −0.0024 (6) | −0.0052 (6) |
| C12 | 0.0533 (9) | 0.0437 (8) | 0.0433 (8) | −0.0129 (7) | −0.0015 (7) | −0.0023 (7) |
| C5 | 0.0388 (8) | 0.0403 (7) | 0.0492 (8) | −0.0038 (6) | 0.0028 (6) | −0.0100 (6) |
| C1 | 0.0624 (10) | 0.0412 (8) | 0.0622 (10) | 0.0110 (7) | −0.0207 (8) | 0.0042 (7) |
| C2 | 0.0660 (11) | 0.0489 (9) | 0.0822 (12) | 0.0191 (9) | −0.0169 (10) | −0.0018 (9) |
| C3 | 0.0609 (11) | 0.0643 (11) | 0.0758 (12) | 0.0237 (9) | −0.0025 (9) | −0.0044 (9) |
| C13 | 0.0795 (13) | 0.0825 (14) | 0.0532 (10) | 0.0105 (10) | 0.0037 (9) | 0.0208 (9) |
| C10 | 0.0952 (15) | 0.0560 (11) | 0.0811 (13) | 0.0109 (11) | −0.0145 (11) | 0.0178 (10) |
| C11 | 0.0806 (14) | 0.0621 (11) | 0.0975 (15) | 0.0070 (11) | −0.0408 (12) | −0.0017 (11) |
| O1—C9 | 1.3471 (18) | C1—C2 | 1.497 (2) |
| O1—C1 | 1.4699 (18) | C1—C11 | 1.509 (3) |
| O2—C7 | 1.3496 (17) | C1—C10 | 1.520 (3) |
| O2—H102 | 0.97 (2) | C2—C3 | 1.517 (3) |
| C9—C4 | 1.383 (2) | C2—H2A | 0.9700 |
| C9—C8 | 1.397 (2) | C2—H2B | 0.9700 |
| O3—C5 | 1.3432 (18) | C3—H3A | 0.9700 |
| O3—H103 | 0.86 (2) | C3—H3B | 0.9700 |
| C7—C8 | 1.365 (2) | C13—H13A | 0.9600 |
| C7—C6 | 1.426 (2) | C13—H13B | 0.9600 |
| O4—C12 | 1.2566 (19) | C13—H13C | 0.9600 |
| C8—H8 | 0.9300 | C10—H10A | 0.9600 |
| C4—C5 | 1.386 (2) | C10—H10B | 0.9600 |
| C4—C3 | 1.502 (2) | C10—H10C | 0.9600 |
| C6—C5 | 1.422 (2) | C11—H11A | 0.9600 |
| C6—C12 | 1.441 (2) | C11—H11B | 0.9600 |
| C12—C13 | 1.482 (2) | C11—H11C | 0.9600 |
| C9—O1—C1 | 119.33 (12) | C1—C2—C3 | 112.68 (15) |
| C7—O2—H102 | 111.0 (11) | C1—C2—H2A | 109.1 |
| O1—C9—C4 | 123.42 (14) | C3—C2—H2A | 109.1 |
| O1—C9—C8 | 114.90 (12) | C1—C2—H2B | 109.1 |
| C4—C9—C8 | 121.68 (13) | C3—C2—H2B | 109.1 |
| C5—O3—H103 | 106.8 (14) | H2A—C2—H2B | 107.8 |
| O2—C7—C8 | 120.88 (13) | C4—C3—C2 | 110.10 (15) |
| O2—C7—C6 | 118.15 (13) | C4—C3—H3A | 109.6 |
| C8—C7—C6 | 120.97 (13) | C2—C3—H3A | 109.6 |
| C7—C8—C9 | 120.46 (13) | C4—C3—H3B | 109.6 |
| C7—C8—H8 | 119.8 | C2—C3—H3B | 109.6 |
| C9—C8—H8 | 119.8 | H3A—C3—H3B | 108.2 |
| C9—C4—C5 | 117.34 (13) | C12—C13—H13A | 109.5 |
| C9—C4—C3 | 120.64 (15) | C12—C13—H13B | 109.5 |
| C5—C4—C3 | 121.99 (14) | H13A—C13—H13B | 109.5 |
| C5—C6—C7 | 115.98 (13) | C12—C13—H13C | 109.5 |
| C5—C6—C12 | 120.00 (13) | H13A—C13—H13C | 109.5 |
| C7—C6—C12 | 124.01 (13) | H13B—C13—H13C | 109.5 |
| O4—C12—C6 | 119.89 (15) | C1—C10—H10A | 109.5 |
| O4—C12—C13 | 116.79 (14) | C1—C10—H10B | 109.5 |
| C6—C12—C13 | 123.32 (14) | H10A—C10—H10B | 109.5 |
| O3—C5—C4 | 115.54 (14) | C1—C10—H10C | 109.5 |
| O3—C5—C6 | 120.90 (14) | H10A—C10—H10C | 109.5 |
| C4—C5—C6 | 123.56 (13) | H10B—C10—H10C | 109.5 |
| O1—C1—C2 | 109.98 (12) | C1—C11—H11A | 109.5 |
| O1—C1—C11 | 106.62 (13) | C1—C11—H11B | 109.5 |
| C2—C1—C11 | 113.80 (18) | H11A—C11—H11B | 109.5 |
| O1—C1—C10 | 103.32 (15) | C1—C11—H11C | 109.5 |
| C2—C1—C10 | 111.17 (15) | H11A—C11—H11C | 109.5 |
| C11—C1—C10 | 111.33 (16) | H11B—C11—H11C | 109.5 |
| C1—O1—C9—C4 | −9.6 (2) | C9—C4—C5—O3 | 179.59 (12) |
| C1—O1—C9—C8 | 170.94 (13) | C3—C4—C5—O3 | 1.4 (2) |
| O2—C7—C8—C9 | 178.90 (13) | C9—C4—C5—C6 | −1.1 (2) |
| C6—C7—C8—C9 | 0.0 (2) | C3—C4—C5—C6 | −179.29 (14) |
| O1—C9—C8—C7 | 178.31 (12) | C7—C6—C5—O3 | 179.24 (13) |
| C4—C9—C8—C7 | −1.2 (2) | C12—C6—C5—O3 | −1.8 (2) |
| O1—C9—C4—C5 | −177.76 (13) | C7—C6—C5—C4 | 0.0 (2) |
| C8—C9—C4—C5 | 1.7 (2) | C12—C6—C5—C4 | 178.93 (13) |
| O1—C9—C4—C3 | 0.5 (2) | C9—O1—C1—C2 | 36.82 (19) |
| C8—C9—C4—C3 | 179.93 (15) | C9—O1—C1—C11 | −87.00 (18) |
| O2—C7—C6—C5 | −178.34 (12) | C9—O1—C1—C10 | 155.56 (14) |
| C8—C7—C6—C5 | 0.6 (2) | O1—C1—C2—C3 | −55.9 (2) |
| O2—C7—C6—C12 | 2.7 (2) | C11—C1—C2—C3 | 63.6 (2) |
| C8—C7—C6—C12 | −178.32 (13) | C10—C1—C2—C3 | −169.70 (14) |
| C5—C6—C12—O4 | 4.3 (2) | C9—C4—C3—C2 | −19.4 (2) |
| C7—C6—C12—O4 | −176.84 (14) | C5—C4—C3—C2 | 158.76 (15) |
| C5—C6—C12—C13 | −175.88 (16) | C1—C2—C3—C4 | 47.0 (2) |
| C7—C6—C12—C13 | 3.0 (2) |
| H··· | ||||
| O2—H102···O4i | 0.97 (2) | 1.77 (2) | 2.737 (2) | 179 (1) |
| O3—H103···O4 | 0.86 (2) | 1.71 (2) | 2.501 (2) | 151 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H102⋯O4i | 0.97 (2) | 1.77 (2) | 2.737 (2) | 179 (1) |
| O3—H103⋯O4 | 0.86 (2) | 1.71 (2) | 2.501 (2) | 151 (2) |
Symmetry code: (i) .