Literature DB >> 22199889

5-Bromo-N-[(E)-(6-bromo-pyridin-2-yl)methyl-idene]pyridine-3,4-diamine.

Mingjian Cai1.   

Abstract

The title compound, C(11)H(8)Br(2)N(4), is a Schiff base obtained from 6-bromo-picolinaldehyde and 5-bromo-pyridine-3,4-diamine. The mol-ecule has an E configuration about the C=N bond and the dihedral angle between the two pyridine rings is 14.02 (1)°. The observed conformation is stabilised by an intramolecular N-H⋯N hydrogen bond. In the crystal, mol-ecules are stacked along the b axis and are linked through N-H⋯N hydrogen bonds into chains along the c axis.

Entities:  

Year:  2011        PMID: 22199889      PMCID: PMC3239041          DOI: 10.1107/S1600536811047702

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of Schiff bases in coordination, see: Burkhardt & Plass (2008 ▶); Keypour et al. (2011 ▶); Tarafder et al. (2002 ▶). For their properties, see: Kocyigit et al. (2010 ▶).

Experimental

Crystal data

C11H8Br2N4 M = 356.03 Monoclinic, a = 24.941 (2) Å b = 3.8306 (6) Å c = 15.0868 (14) Å β = 126.116 (14)° V = 1164.4 (2) Å3 Z = 4 Mo Kα radiation μ = 6.94 mm−1 T = 113 K 0.20 × 0.18 × 0.12 mm

Data collection

Rigaku Saturn 724CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002 ▶) T min = 0.337, T max = 0.490 5047 measured reflections 2282 independent reflections 2070 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.055 S = 0.89 2282 reflections 118 parameters 38 restraints H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.63 e Å−3 Absolute structure: Flack (1983 ▶), 1093 Friedel pairs Flack parameter: 0.002 (12) Data collection: CrystalClear (Rigaku/MSC, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Crystal Impact, 2009 ▶); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2006 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047702/ld2030sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047702/ld2030Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047702/ld2030Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8Br2N4F(000) = 688
Mr = 356.03Dx = 2.031 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
a = 24.941 (2) ÅCell parameters from 2086 reflections
b = 3.8306 (6) Åθ = 1.7–27.9°
c = 15.0868 (14) ŵ = 6.94 mm1
β = 126.116 (14)°T = 113 K
V = 1164.4 (2) Å3Prism, colorless
Z = 40.20 × 0.18 × 0.12 mm
Rigaku Saturn 724CCD diffractometer2282 independent reflections
Radiation source: rotating anode2070 reflections with I > 2σ(I)
multilayerRint = 0.046
Detector resolution: 14.22 pixels mm-1θmax = 26.4°, θmin = 2.0°
ω scansh = −30→29
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2002)k = −4→4
Tmin = 0.337, Tmax = 0.490l = −18→18
5047 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.055(Δ/σ)max < 0.001
S = 0.89Δρmax = 0.45 e Å3
2282 reflectionsΔρmin = −0.63 e Å3
118 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
38 restraintsExtinction coefficient: 0.00177 (14)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1093 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.002 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt)etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.32411 (2)−1.16292 (13)−0.65216 (3)0.01513 (13)
Br2−0.60799 (2)0.03838 (13)−0.34064 (3)0.01849 (14)
C6−0.4590 (3)−0.6690 (12)−0.5248 (4)0.0102 (6)
H6−0.4959−0.7657−0.59130.012*
C1−0.3284 (3)−0.9595 (12)−0.5398 (4)0.0102 (7)
C9−0.5986 (3)−0.1427 (11)−0.4469 (4)0.0102 (6)
N2−0.4692 (2)−0.4839 (10)−0.4673 (3)0.0102 (6)
C4−0.3354 (3)−0.6323 (13)−0.3902 (4)0.0117 (12)
H4−0.3393−0.5114−0.33930.014*
C5−0.3928 (3)−0.7397 (13)−0.4927 (4)0.0102 (7)
C8−0.5367 (3)−0.2611 (13)−0.4152 (4)0.0102 (6)
N1−0.3883 (2)−0.9064 (10)−0.5679 (3)0.0102 (10)
N3−0.6504 (2)−0.2897 (11)−0.6358 (3)0.0160 (11)
C2−0.2699 (3)−0.8765 (12)−0.4417 (4)0.0102 (7)
H2−0.2282−0.9341−0.42660.012*
C10−0.6531 (3)−0.1634 (12)−0.5552 (4)0.0102 (6)
H10−0.6947−0.0846−0.57380.012*
N4−0.4818 (2)−0.2585 (10)−0.3118 (3)0.0156 (10)
H4A−0.4834−0.1785−0.25870.019*
H4B−0.4441−0.3367−0.29690.019*
C3−0.2743 (3)−0.7040 (13)−0.3652 (4)0.0136 (12)
H3−0.2353−0.6368−0.29630.016*
C11−0.5907 (3)−0.3985 (12)−0.6050 (4)0.0127 (13)
H11−0.5878−0.4893−0.66060.015*
C7−0.5329 (3)−0.3906 (12)−0.4994 (4)0.0102 (6)
U11U22U33U12U13U23
Br10.0168 (3)0.0139 (3)0.0191 (3)0.0022 (2)0.0129 (2)−0.0024 (2)
Br20.0207 (3)0.0179 (3)0.0219 (3)0.0026 (3)0.0153 (3)−0.0004 (3)
C60.0118 (15)0.0111 (14)0.0086 (13)−0.0005 (15)0.0064 (12)0.0002 (13)
C10.0100 (17)0.0077 (15)0.0135 (17)−0.0007 (12)0.0073 (14)0.0026 (12)
C90.0122 (15)0.0052 (13)0.0154 (14)−0.0006 (10)0.0094 (12)0.0015 (10)
N20.0118 (15)0.0111 (14)0.0086 (13)−0.0005 (15)0.0064 (12)0.0002 (13)
C40.018 (3)0.010 (3)0.010 (3)0.001 (2)0.010 (3)0.002 (2)
C50.0100 (17)0.0077 (15)0.0135 (17)−0.0007 (12)0.0073 (14)0.0026 (12)
C80.0122 (15)0.0052 (13)0.0154 (14)−0.0006 (10)0.0094 (12)0.0015 (10)
N10.013 (3)0.008 (2)0.008 (2)−0.0011 (18)0.006 (2)0.0017 (17)
N30.009 (3)0.023 (3)0.012 (2)0.003 (2)0.004 (2)0.0014 (19)
C20.0100 (17)0.0077 (15)0.0135 (17)−0.0007 (12)0.0073 (14)0.0026 (12)
C100.0122 (15)0.0052 (13)0.0154 (14)−0.0006 (10)0.0094 (12)0.0015 (10)
N40.005 (2)0.031 (3)0.010 (2)0.0035 (19)0.004 (2)−0.0036 (18)
C30.008 (3)0.017 (3)0.008 (3)−0.003 (2)0.000 (2)0.004 (2)
C110.016 (3)0.011 (3)0.012 (3)0.002 (2)0.009 (3)0.000 (2)
C70.0122 (15)0.0052 (13)0.0154 (14)−0.0006 (10)0.0094 (12)0.0015 (10)
Br1—C11.925 (5)C5—N11.363 (6)
Br2—C91.884 (5)C8—N41.337 (6)
C6—N21.256 (5)C8—C71.418 (7)
C6—C51.447 (7)N3—C111.339 (6)
C6—H60.9500N3—C101.347 (5)
C1—N11.305 (7)C2—C31.389 (7)
C1—C21.370 (7)C2—H20.9500
C9—C101.380 (6)C10—H100.9500
C9—C81.397 (7)N4—H4A0.8800
N2—C71.407 (7)N4—H4B0.8800
C4—C31.363 (7)C3—H30.9500
C4—C51.414 (7)C11—C71.382 (7)
C4—H40.9500C11—H110.9500
N2—C6—C5122.0 (4)C11—N3—C10115.9 (5)
N2—C6—H6119.0C1—C2—C3116.9 (5)
C5—C6—H6119.0C1—C2—H2121.6
N1—C1—C2127.0 (5)C3—C2—H2121.6
N1—C1—Br1115.1 (4)N3—C10—C9123.4 (5)
C2—C1—Br1117.9 (4)N3—C10—H10118.3
C10—C9—C8120.4 (5)C9—C10—H10118.3
C10—C9—Br2119.9 (4)C8—N4—H4A120.0
C8—C9—Br2119.6 (4)C8—N4—H4B120.0
C6—N2—C7123.5 (4)H4A—N4—H4B120.0
C3—C4—C5119.4 (5)C4—C3—C2119.2 (5)
C3—C4—H4120.3C4—C3—H3120.4
C5—C4—H4120.3C2—C3—H3120.4
N1—C5—C4121.3 (5)N3—C11—C7125.8 (5)
N1—C5—C6116.6 (5)N3—C11—H11117.1
C4—C5—C6122.1 (5)C7—C11—H11117.1
N4—C8—C9124.2 (5)C11—C7—N2126.2 (5)
N4—C8—C7119.0 (5)C11—C7—C8117.7 (5)
C9—C8—C7116.8 (5)N2—C7—C8116.0 (5)
C1—N1—C5116.2 (4)
C5—C6—N2—C7175.6 (5)C11—N3—C10—C90.3 (7)
C3—C4—C5—N1−1.5 (7)C8—C9—C10—N3−1.1 (7)
C3—C4—C5—C6−179.4 (4)Br2—C9—C10—N3−180.0 (4)
N2—C6—C5—N1−172.0 (4)C5—C4—C3—C21.0 (7)
N2—C6—C5—C46.0 (7)C1—C2—C3—C41.0 (7)
C10—C9—C8—N4−178.3 (4)C10—N3—C11—C7−0.2 (8)
Br2—C9—C8—N40.6 (7)N3—C11—C7—N2−175.7 (5)
C10—C9—C8—C71.8 (7)N3—C11—C7—C81.0 (8)
Br2—C9—C8—C7−179.3 (3)C6—N2—C7—C11−19.0 (8)
C2—C1—N1—C52.4 (7)C6—N2—C7—C8164.2 (4)
Br1—C1—N1—C5−175.4 (3)N4—C8—C7—C11178.4 (4)
C4—C5—N1—C1−0.1 (7)C9—C8—C7—C11−1.7 (7)
C6—C5—N1—C1177.9 (4)N4—C8—C7—N2−4.5 (7)
N1—C1—C2—C3−2.9 (7)C9—C8—C7—N2175.4 (4)
Br1—C1—C2—C3174.9 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4B···N20.882.332.686 (6)104.
N4—H4A···N1i0.882.443.043 (5)126.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4B⋯N20.882.332.686 (6)104
N4—H4A⋯N1i0.882.443.043 (5)126

Symmetry code: (i) .

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