Literature DB >> 22199879

Methyl 4,4''-difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-carboxyl-ate.

Hoong-Kun Fun, Tze Shyang Chia, S Samshuddin, B Narayana, B K Sarojini.   

Abstract

In the title compound, C(21)H(16)F(2)O(3), the pendant fluoro-benzene rings form dihedral angles of 22.22 (12) and 50.74 (11)° with the central benzene ring. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds into chains along the a axis. The crystal structure also features C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 22199879      PMCID: PMC3239031          DOI: 10.1107/S1600536811048719

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to terphenyls, see: Fun et al. (2011 ▶). For further related structures, see: Betz et al. (2011a ▶,b ▶). For further synthetic details, see: Kotnis (1990 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H16F2O3 M = 354.34 Orthorhombic, a = 8.1270 (1) Å b = 9.4681 (1) Å c = 22.3297 (3) Å V = 1718.21 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.26 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.973, T max = 0.982 11903 measured reflections 2851 independent reflections 2411 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.102 S = 1.13 2851 reflections 235 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811048719/hb6516sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048719/hb6516Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811048719/hb6516Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H16F2O3F(000) = 736
Mr = 354.34Dx = 1.370 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3629 reflections
a = 8.1270 (1) Åθ = 2.8–30.6°
b = 9.4681 (1) ŵ = 0.11 mm1
c = 22.3297 (3) ÅT = 100 K
V = 1718.21 (4) Å3Block, colourless
Z = 40.26 × 0.20 × 0.18 mm
Bruker SMART APEXII CCD diffractometer2851 independent reflections
Radiation source: fine-focus sealed tube2411 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 30.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→9
Tmin = 0.973, Tmax = 0.982k = −13→10
11903 measured reflectionsl = −31→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0345P)2 + 0.548P] where P = (Fo2 + 2Fc2)/3
2851 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.7209 (2)0.59514 (17)0.82984 (6)0.0346 (4)
F20.5985 (2)1.05766 (16)0.32763 (7)0.0340 (4)
O10.2900 (2)0.27202 (16)0.49542 (7)0.0214 (4)
O20.1948 (2)0.54018 (18)0.39484 (7)0.0252 (4)
O30.3970 (2)0.38062 (19)0.38201 (7)0.0264 (4)
C10.6798 (3)0.6457 (2)0.66999 (10)0.0182 (5)
H1A0.72600.70220.63910.022*
C20.7354 (3)0.6627 (3)0.72845 (10)0.0218 (5)
H2A0.81800.73010.73790.026*
C30.6670 (3)0.5787 (3)0.77222 (10)0.0223 (5)
C40.5468 (4)0.4812 (3)0.76107 (10)0.0260 (6)
H4A0.50180.42550.79240.031*
C50.4921 (3)0.4661 (3)0.70215 (10)0.0234 (5)
H5A0.40870.39900.69340.028*
C60.5580 (3)0.5481 (2)0.65562 (9)0.0163 (4)
C70.4997 (3)0.5310 (2)0.59270 (9)0.0155 (4)
C80.4251 (3)0.4044 (2)0.57459 (9)0.0173 (5)
H8A0.41360.32870.60220.021*
C90.3682 (3)0.3896 (2)0.51633 (10)0.0160 (4)
C100.3870 (3)0.4985 (2)0.47469 (9)0.0160 (4)
C110.4653 (3)0.6234 (2)0.49160 (9)0.0153 (4)
C120.5185 (3)0.6392 (2)0.55078 (10)0.0162 (4)
H12A0.56860.72540.56270.019*
C130.4995 (3)0.7377 (2)0.44754 (10)0.0162 (4)
C140.5776 (3)0.7085 (2)0.39312 (10)0.0202 (5)
H14A0.60680.61400.38360.024*
C150.6131 (3)0.8163 (3)0.35290 (11)0.0236 (5)
H15A0.66650.79660.31600.028*
C160.5690 (3)0.9521 (3)0.36781 (11)0.0234 (5)
C170.4933 (3)0.9866 (2)0.42104 (11)0.0223 (5)
H17A0.46431.08150.43000.027*
C180.4605 (3)0.8777 (2)0.46129 (10)0.0202 (5)
H18A0.41090.89900.49870.024*
C190.2657 (3)0.1589 (2)0.53712 (10)0.0207 (5)
H19A0.21530.07840.51650.031*
H19B0.19320.19060.56950.031*
H19C0.37210.13030.55390.031*
C200.3146 (3)0.4776 (2)0.41326 (10)0.0181 (5)
C210.3284 (4)0.3466 (4)0.32363 (12)0.0410 (8)
H21A0.23470.28250.32860.062*
H21B0.41270.30090.29900.062*
H21C0.29150.43360.30400.062*
U11U22U33U12U13U23
F10.0421 (10)0.0490 (10)0.0127 (7)−0.0089 (8)−0.0074 (7)−0.0038 (7)
F20.0373 (10)0.0306 (8)0.0341 (8)−0.0019 (8)0.0038 (8)0.0178 (7)
O10.0310 (10)0.0176 (7)0.0157 (7)−0.0079 (7)−0.0028 (7)0.0001 (6)
O20.0299 (10)0.0233 (8)0.0224 (8)0.0058 (8)−0.0088 (8)−0.0020 (7)
O30.0301 (10)0.0354 (10)0.0137 (8)0.0092 (8)−0.0040 (7)−0.0068 (7)
C10.0211 (12)0.0182 (10)0.0152 (10)−0.0020 (10)0.0016 (9)−0.0008 (8)
C20.0232 (13)0.0239 (11)0.0184 (11)−0.0035 (10)−0.0031 (10)−0.0035 (9)
C30.0268 (13)0.0292 (12)0.0109 (10)0.0017 (11)−0.0042 (10)−0.0036 (9)
C40.0308 (15)0.0330 (13)0.0141 (10)−0.0048 (12)0.0007 (10)0.0033 (10)
C50.0255 (13)0.0292 (12)0.0154 (10)−0.0076 (11)−0.0023 (10)0.0014 (10)
C60.0182 (11)0.0182 (10)0.0125 (9)0.0006 (9)0.0000 (9)−0.0017 (8)
C70.0140 (10)0.0183 (10)0.0141 (10)0.0009 (9)−0.0003 (9)−0.0016 (8)
C80.0198 (12)0.0184 (10)0.0136 (10)−0.0010 (9)0.0007 (9)0.0021 (8)
C90.0162 (11)0.0156 (9)0.0161 (10)−0.0006 (8)−0.0016 (9)−0.0012 (8)
C100.0167 (11)0.0176 (10)0.0136 (9)0.0021 (8)0.0004 (9)−0.0013 (8)
C110.0158 (11)0.0147 (9)0.0154 (10)0.0022 (8)0.0012 (9)0.0000 (8)
C120.0172 (11)0.0168 (10)0.0146 (10)−0.0001 (9)−0.0005 (9)−0.0017 (8)
C130.0158 (11)0.0176 (10)0.0151 (10)−0.0007 (9)−0.0025 (9)0.0013 (8)
C140.0203 (12)0.0210 (11)0.0192 (10)0.0012 (10)−0.0026 (10)0.0018 (9)
C150.0223 (13)0.0302 (13)0.0183 (11)−0.0001 (10)0.0016 (10)0.0048 (10)
C160.0230 (13)0.0229 (11)0.0244 (12)−0.0037 (10)−0.0019 (10)0.0106 (10)
C170.0253 (13)0.0161 (10)0.0255 (12)−0.0011 (10)−0.0048 (11)0.0027 (9)
C180.0252 (13)0.0176 (10)0.0179 (11)−0.0003 (9)−0.0027 (10)0.0001 (9)
C190.0237 (13)0.0189 (10)0.0197 (11)−0.0042 (10)−0.0022 (10)0.0009 (9)
C200.0222 (12)0.0158 (10)0.0163 (10)−0.0024 (9)−0.0002 (9)0.0014 (8)
C210.052 (2)0.0546 (18)0.0166 (12)0.0205 (17)−0.0117 (13)−0.0164 (13)
F1—C31.368 (3)C9—C101.397 (3)
F2—C161.364 (3)C10—C111.395 (3)
O1—C91.364 (3)C10—C201.506 (3)
O1—C191.433 (3)C11—C121.398 (3)
O2—C201.211 (3)C11—C131.489 (3)
O3—C201.334 (3)C12—H12A0.9500
O3—C211.454 (3)C13—C181.397 (3)
C1—C21.391 (3)C13—C141.399 (3)
C1—C61.392 (3)C14—C151.390 (3)
C1—H1A0.9500C14—H14A0.9500
C2—C31.377 (3)C15—C161.376 (3)
C2—H2A0.9500C15—H15A0.9500
C3—C41.367 (4)C16—C171.378 (3)
C4—C51.396 (3)C17—C181.393 (3)
C4—H4A0.9500C17—H17A0.9500
C5—C61.403 (3)C18—H18A0.9500
C5—H5A0.9500C19—H19A0.9800
C6—C71.491 (3)C19—H19B0.9800
C7—C121.396 (3)C19—H19C0.9800
C7—C81.403 (3)C21—H21A0.9800
C8—C91.388 (3)C21—H21B0.9800
C8—H8A0.9500C21—H21C0.9800
C9—O1—C19116.85 (17)C7—C12—H12A119.3
C20—O3—C21115.4 (2)C11—C12—H12A119.3
C2—C1—C6121.6 (2)C18—C13—C14118.8 (2)
C2—C1—H1A119.2C18—C13—C11120.1 (2)
C6—C1—H1A119.2C14—C13—C11121.00 (19)
C3—C2—C1117.9 (2)C15—C14—C13120.7 (2)
C3—C2—H2A121.0C15—C14—H14A119.7
C1—C2—H2A121.0C13—C14—H14A119.7
C4—C3—F1118.5 (2)C16—C15—C14118.4 (2)
C4—C3—C2123.3 (2)C16—C15—H15A120.8
F1—C3—C2118.2 (2)C14—C15—H15A120.8
C3—C4—C5117.9 (2)F2—C16—C15118.7 (2)
C3—C4—H4A121.0F2—C16—C17118.2 (2)
C5—C4—H4A121.0C15—C16—C17123.1 (2)
C4—C5—C6121.3 (2)C16—C17—C18117.8 (2)
C4—C5—H5A119.3C16—C17—H17A121.1
C6—C5—H5A119.3C18—C17—H17A121.1
C1—C6—C5117.9 (2)C17—C18—C13121.1 (2)
C1—C6—C7121.0 (2)C17—C18—H18A119.4
C5—C6—C7121.1 (2)C13—C18—H18A119.4
C12—C7—C8118.75 (19)O1—C19—H19A109.5
C12—C7—C6121.2 (2)O1—C19—H19B109.5
C8—C7—C6120.1 (2)H19A—C19—H19B109.5
C9—C8—C7120.0 (2)O1—C19—H19C109.5
C9—C8—H8A120.0H19A—C19—H19C109.5
C7—C8—H8A120.0H19B—C19—H19C109.5
O1—C9—C8124.0 (2)O2—C20—O3124.2 (2)
O1—C9—C10115.18 (18)O2—C20—C10124.0 (2)
C8—C9—C10120.9 (2)O3—C20—C10111.8 (2)
C9—C10—C11119.69 (19)O3—C21—H21A109.5
C9—C10—C20117.84 (19)O3—C21—H21B109.5
C11—C10—C20122.42 (19)H21A—C21—H21B109.5
C10—C11—C12119.20 (19)O3—C21—H21C109.5
C10—C11—C13121.49 (19)H21A—C21—H21C109.5
C12—C11—C13119.26 (19)H21B—C21—H21C109.5
C7—C12—C11121.4 (2)
C6—C1—C2—C30.5 (4)C9—C10—C11—C13175.2 (2)
C1—C2—C3—C4−0.7 (4)C20—C10—C11—C13−7.3 (3)
C1—C2—C3—F1−179.9 (2)C8—C7—C12—C11−0.2 (4)
F1—C3—C4—C5179.6 (2)C6—C7—C12—C11179.5 (2)
C2—C3—C4—C50.4 (4)C10—C11—C12—C72.1 (3)
C3—C4—C5—C60.0 (4)C13—C11—C12—C7−175.4 (2)
C2—C1—C6—C5−0.1 (4)C10—C11—C13—C18132.5 (2)
C2—C1—C6—C7−179.9 (2)C12—C11—C13—C18−50.0 (3)
C4—C5—C6—C1−0.2 (4)C10—C11—C13—C14−50.5 (3)
C4—C5—C6—C7179.7 (2)C12—C11—C13—C14127.0 (2)
C1—C6—C7—C12−22.6 (3)C18—C13—C14—C15−1.3 (4)
C5—C6—C7—C12157.5 (2)C11—C13—C14—C15−178.3 (2)
C1—C6—C7—C8157.1 (2)C13—C14—C15—C16−0.2 (4)
C5—C6—C7—C8−22.8 (3)C14—C15—C16—F2−177.8 (2)
C12—C7—C8—C9−1.5 (3)C14—C15—C16—C170.8 (4)
C6—C7—C8—C9178.8 (2)F2—C16—C17—C18178.7 (2)
C19—O1—C9—C80.4 (3)C15—C16—C17—C180.0 (4)
C19—O1—C9—C10−178.9 (2)C16—C17—C18—C13−1.6 (4)
C7—C8—C9—O1−178.0 (2)C14—C13—C18—C172.2 (4)
C7—C8—C9—C101.3 (4)C11—C13—C18—C17179.2 (2)
O1—C9—C10—C11179.9 (2)C21—O3—C20—O2−3.3 (3)
C8—C9—C10—C110.6 (3)C21—O3—C20—C10175.9 (2)
O1—C9—C10—C202.4 (3)C9—C10—C20—O2108.9 (3)
C8—C9—C10—C20−177.0 (2)C11—C10—C20—O2−68.6 (3)
C9—C10—C11—C12−2.3 (3)C9—C10—C20—O3−70.2 (3)
C20—C10—C11—C12175.2 (2)C11—C10—C20—O3112.3 (2)
Cg1 and Cg2 are the centroids of the C13—C18 and C7–C12 benzene rings, respectively.
D—H···AD—HH···AD···AD—H···A
C1—H1A···O2i0.952.573.310 (3)135
C1—H1A···Cg1ii0.952.763.367 (3)123
C19—H19A···Cg2iii0.982.623.466 (2)144
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C13—C18 and C7–C12 benzene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O2i0.952.573.310 (3)135
C1—H1ACg1ii0.952.763.367 (3)123
C19—H19ACg2iii0.982.623.466 (2)144

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-(4,4''-Difluoro-5'-hy-droxy-1,1':3',1''-terphenyl-4'-yl)-3-(morpholin-4-ylmeth-yl)-1,3,4-oxadiazole-2(3H)-thione.

Authors:  Hoong-Kun Fun; Suhana Arshad; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-19

3.  (E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-phenyl-prop-2-en-1-one.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; S Samshuddin; Badiadka Narayana; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-02

4.  (E)-1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)-3-(4-methyl-phen-yl)prop-2-en-1-one.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Seranthimata Samshuddin; Badiadka Narayana; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  5 in total

1.  Ethyl ({5-[5'-(2-eth-oxy-2-oxoeth-oxy)-4,4''-difluoro-1,1':3',1''-terphenyl-4'-yl]-1,3,4-oxadiazol-2-yl}sulfan-yl)acetate.

Authors:  Hoong-Kun Fun; Suhana Arshad; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

2.  Ethyl 4,4''-difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-carboxyl-ate.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-21

3.  1-(4,4''-Difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)ethanone.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-17

4.  2-[3,5-Bis-(4-fluoro-phen-yl)-4,5-dihydro-1H-pyrazol-1-yl]-4,6-bis(4-fluoro-phenyl)pyrimidine.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

5.  (2E)-3-(4-Cyano-phen-yl)-1-(4,4''-difluoro-5'-meth-oxy-1,1':3',1''-terphenyl-4'-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Wan-Sin Loh; S Samshuddin; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-26
  5 in total

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