Literature DB >> 22199866

5,8-Bis(3-hy-droxy-3-methyl-but-1-yn-1-yl)-2,11-dithia-[3.3]paracyclo-phane.

Di Wu1, Jie Huang.   

Abstract

IN THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 2,2'-dimethyl-4,4'-(3,10-dithia-tricyclo-[10.2.2.2(5,8)]octa-deca-1(14),5,7,12,15,17-hexaen-6,17-di-yl)dibut-3-yn-2-ol], C(26)H(28)O(2)S(2), mol-ecules are linked by O-H⋯O hydrogen bonds, forming a tubular chain which runs parallel to the b axis. The tubular structure is reinforced by π-π stacking inter-actions [centroid-centroid distance = 3.6332(16Å].

Entities:  

Year:  2011        PMID: 22199866      PMCID: PMC3239018          DOI: 10.1107/S1600536811048446

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Jin & Lu (2010 ▶). For mol­ecular building blocks associated with para-cyclo­phanes see: Xu et al. (2008 ▶).

Experimental

Crystal data

C26H28O2S2 M = 436.60 Monoclinic, a = 17.1059 (5) Å b = 11.8596 (4) Å c = 24.5073 (10) Å β = 108.113 (2)° V = 4725.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.25 mm−1 T = 298 K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.943, T max = 0.976 14956 measured reflections 4646 independent reflections 2596 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.149 S = 0.92 4646 reflections 277 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811048446/go2035sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048446/go2035Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811048446/go2035Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H28O2S2F(000) = 1856
Mr = 436.60Dx = 1.227 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1923 reflections
a = 17.1059 (5) Åθ = 2.4–21.8°
b = 11.8596 (4) ŵ = 0.25 mm1
c = 24.5073 (10) ÅT = 298 K
β = 108.113 (2)°Block, colourless
V = 4725.4 (3) Å30.20 × 0.10 × 0.10 mm
Z = 8
Bruker SMART CCD area-detector diffractometer4646 independent reflections
Radiation source: fine-focus sealed tube2596 reflections with I > 2σ(I)
graphiteRint = 0.080
φ and ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −21→20
Tmin = 0.943, Tmax = 0.976k = −12→14
14956 measured reflectionsl = −30→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H-atom parameters constrained
S = 0.92w = 1/[σ2(Fo2) + (0.0638P)2] where P = (Fo2 + 2Fc2)/3
4646 reflections(Δ/σ)max < 0.001
277 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.00428 (17)0.1057 (2)0.17980 (12)0.0432 (7)
C20.91906 (18)0.1194 (2)0.15785 (12)0.0439 (7)
C30.88756 (18)0.2274 (2)0.15218 (12)0.0467 (7)
H30.83080.23760.13960.056*
C40.93876 (18)0.3215 (2)0.16488 (12)0.0427 (7)
C51.02399 (17)0.3086 (2)0.18464 (12)0.0432 (7)
C61.05457 (18)0.1999 (2)0.19349 (12)0.0479 (8)
H61.11100.18960.20920.057*
C70.86268 (19)0.0188 (2)0.13702 (14)0.0607 (9)
H7A0.83230.00590.16390.073*
H7B0.8966−0.04720.13800.073*
C80.8537 (3)0.0327 (3)0.01972 (17)0.0937 (13)
H8A0.8882−0.03410.02740.112*
H8B0.81820.0278−0.01970.112*
C90.9086 (2)0.1353 (3)0.02529 (14)0.0646 (9)
C100.8766 (2)0.2425 (3)0.01542 (15)0.0699 (10)
H100.82010.2520−0.00050.084*
C110.9268 (2)0.3362 (3)0.02867 (14)0.0615 (9)
H110.90340.40770.02210.074*
C121.0111 (2)0.3257 (3)0.05155 (13)0.0555 (8)
C131.0431 (2)0.2181 (3)0.05674 (14)0.0658 (9)
H131.09990.20830.06910.079*
C140.9928 (2)0.1248 (3)0.04403 (14)0.0644 (9)
H141.01620.05330.04820.077*
C151.0646 (2)0.4279 (3)0.07326 (15)0.0728 (10)
H15A1.02910.49110.07420.087*
H15B1.09300.44600.04570.087*
C161.08110 (18)0.4088 (2)0.19252 (14)0.0566 (9)
H16A1.11880.40740.23140.068*
H16B1.04860.47720.18850.068*
C171.04174 (18)−0.0044 (2)0.18399 (12)0.0488 (8)
C181.07335 (18)−0.0932 (3)0.18470 (13)0.0528 (8)
C191.1114 (2)−0.2046 (3)0.18242 (14)0.0586 (9)
C201.0999 (3)−0.2365 (3)0.12062 (17)0.1061 (15)
H20A1.1261−0.30760.11940.159*
H20B1.1241−0.17960.10300.159*
H20C1.0423−0.24240.10020.159*
C211.2026 (2)−0.2005 (3)0.21646 (18)0.0865 (12)
H21A1.2090−0.17890.25540.130*
H21B1.2297−0.14650.19940.130*
H21C1.2266−0.27360.21610.130*
C220.90358 (18)0.4331 (3)0.15376 (13)0.0492 (8)
C230.87791 (18)0.5261 (3)0.14457 (14)0.0550 (8)
C240.8459 (2)0.6417 (3)0.13498 (17)0.0758 (12)
C250.8404 (3)0.6801 (3)0.0756 (2)0.140 (2)
H25A0.81500.75310.06870.210*
H25B0.80800.62730.04800.210*
H25C0.89470.68430.07200.210*
C260.7637 (2)0.6443 (4)0.1460 (2)0.135 (2)
H26A0.77120.62610.18550.203*
H26B0.72740.59020.12170.203*
H26C0.74020.71830.13780.203*
O11.07259 (14)−0.28867 (17)0.20705 (10)0.0672 (6)
H11.0921−0.28700.24210.101*
O20.90016 (13)0.71742 (18)0.17522 (11)0.0744 (7)
H20.94780.70480.17650.112*
S10.79017 (5)0.03053 (7)0.06626 (4)0.0678 (3)
S21.14046 (5)0.41556 (7)0.14312 (4)0.0590 (3)
U11U22U33U12U13U23
C10.0508 (18)0.0408 (18)0.0387 (18)0.0058 (14)0.0149 (15)0.0022 (13)
C20.0529 (19)0.0422 (17)0.0369 (17)0.0019 (14)0.0146 (15)0.0054 (13)
C30.0460 (17)0.0450 (19)0.051 (2)0.0045 (14)0.0173 (16)0.0028 (15)
C40.0547 (19)0.0374 (17)0.0399 (18)0.0096 (14)0.0202 (15)−0.0001 (13)
C50.0491 (18)0.0392 (17)0.0419 (18)0.0000 (14)0.0148 (15)−0.0077 (13)
C60.0467 (17)0.0476 (19)0.048 (2)0.0069 (15)0.0132 (15)−0.0037 (14)
C70.057 (2)0.0465 (19)0.075 (2)−0.0017 (16)0.0148 (18)0.0075 (17)
C80.109 (3)0.088 (3)0.088 (3)−0.035 (2)0.036 (3)−0.036 (2)
C90.074 (3)0.075 (3)0.048 (2)−0.011 (2)0.0235 (19)−0.0121 (18)
C100.059 (2)0.089 (3)0.065 (3)−0.003 (2)0.024 (2)0.001 (2)
C110.067 (2)0.068 (2)0.052 (2)0.0091 (19)0.0225 (19)0.0164 (18)
C120.063 (2)0.058 (2)0.045 (2)0.0012 (17)0.0159 (17)0.0096 (16)
C130.062 (2)0.071 (3)0.058 (2)0.004 (2)0.0083 (19)−0.0029 (19)
C140.084 (3)0.058 (2)0.046 (2)0.003 (2)0.013 (2)−0.0098 (17)
C150.077 (2)0.063 (2)0.075 (3)−0.0068 (19)0.020 (2)0.0167 (19)
C160.0585 (19)0.0420 (18)0.068 (2)0.0066 (15)0.0177 (18)−0.0097 (16)
C170.0575 (19)0.0392 (18)0.0475 (19)−0.0003 (15)0.0131 (16)0.0013 (15)
C180.0551 (19)0.047 (2)0.052 (2)0.0068 (16)0.0108 (16)0.0014 (16)
C190.070 (2)0.0448 (19)0.059 (2)0.0146 (16)0.0179 (19)0.0058 (16)
C200.170 (4)0.077 (3)0.074 (3)0.028 (3)0.042 (3)−0.012 (2)
C210.061 (2)0.083 (3)0.115 (4)0.020 (2)0.028 (2)0.027 (2)
C220.0521 (19)0.0460 (19)0.051 (2)0.0065 (15)0.0186 (16)−0.0078 (15)
C230.0471 (18)0.045 (2)0.068 (2)0.0087 (15)0.0100 (17)−0.0118 (16)
C240.069 (2)0.044 (2)0.083 (3)0.0186 (17)−0.022 (2)−0.0229 (19)
C250.212 (6)0.058 (3)0.087 (4)0.002 (3)−0.046 (4)−0.002 (2)
C260.056 (2)0.111 (4)0.201 (6)0.028 (2)−0.014 (3)−0.088 (4)
O10.0762 (16)0.0430 (13)0.0763 (17)0.0061 (11)0.0145 (14)0.0070 (12)
O20.0620 (14)0.0477 (13)0.0908 (19)0.0060 (11)−0.0093 (15)−0.0242 (12)
S10.0540 (5)0.0654 (6)0.0772 (7)−0.0130 (4)0.0104 (5)−0.0030 (5)
S20.0494 (5)0.0500 (5)0.0773 (7)−0.0036 (4)0.0194 (5)−0.0010 (4)
C1—C61.386 (4)C15—S21.804 (3)
C1—C21.397 (4)C15—H15A0.9700
C1—C171.445 (4)C15—H15B0.9700
C2—C31.381 (4)C16—S21.808 (3)
C2—C71.519 (4)C16—H16A0.9700
C3—C41.393 (4)C16—H16B0.9700
C3—H30.9300C17—C181.181 (4)
C4—C51.395 (4)C18—C191.481 (4)
C4—C221.444 (4)C19—O11.431 (4)
C5—C61.383 (4)C19—C201.514 (5)
C5—C161.512 (4)C19—C211.525 (4)
C6—H60.9300C20—H20A0.9600
C7—S11.797 (3)C20—H20B0.9600
C7—H7A0.9700C20—H20C0.9600
C7—H7B0.9700C21—H21A0.9600
C8—C91.517 (5)C21—H21B0.9600
C8—S11.804 (4)C21—H21C0.9600
C8—H8A0.9700C22—C231.183 (4)
C8—H8B0.9700C23—C241.467 (4)
C9—C141.375 (4)C24—O21.440 (4)
C9—C101.376 (5)C24—C251.500 (6)
C10—C111.379 (4)C24—C261.512 (5)
C10—H100.9300C25—H25A0.9600
C11—C121.381 (4)C25—H25B0.9600
C11—H110.9300C25—H25C0.9600
C12—C131.380 (4)C26—H26A0.9600
C12—C151.512 (4)C26—H26B0.9600
C13—C141.377 (4)C26—H26C0.9600
C13—H130.9300O1—H10.8200
C14—H140.9300O2—H20.8200
C6—C1—C2119.7 (3)S2—C15—H15B108.2
C6—C1—C17118.9 (3)H15A—C15—H15B107.3
C2—C1—C17121.2 (3)C5—C16—S2115.1 (2)
C3—C2—C1118.3 (3)C5—C16—H16A108.5
C3—C2—C7120.5 (3)S2—C16—H16A108.5
C1—C2—C7121.1 (3)C5—C16—H16B108.5
C2—C3—C4121.5 (3)S2—C16—H16B108.5
C2—C3—H3119.2H16A—C16—H16B107.5
C4—C3—H3119.2C18—C17—C1176.4 (3)
C3—C4—C5120.4 (2)C17—C18—C19177.1 (3)
C3—C4—C22119.7 (3)O1—C19—C18109.8 (3)
C5—C4—C22119.7 (3)O1—C19—C20108.4 (3)
C6—C5—C4117.4 (3)C18—C19—C20109.8 (3)
C6—C5—C16121.0 (3)O1—C19—C21108.7 (3)
C4—C5—C16121.5 (2)C18—C19—C21109.8 (3)
C5—C6—C1122.5 (3)C20—C19—C21110.3 (3)
C5—C6—H6118.8C19—C20—H20A109.5
C1—C6—H6118.8C19—C20—H20B109.5
C2—C7—S1116.0 (2)H20A—C20—H20B109.5
C2—C7—H7A108.3C19—C20—H20C109.5
S1—C7—H7A108.3H20A—C20—H20C109.5
C2—C7—H7B108.3H20B—C20—H20C109.5
S1—C7—H7B108.3C19—C21—H21A109.5
H7A—C7—H7B107.4C19—C21—H21B109.5
C9—C8—S1115.6 (2)H21A—C21—H21B109.5
C9—C8—H8A108.4C19—C21—H21C109.5
S1—C8—H8A108.4H21A—C21—H21C109.5
C9—C8—H8B108.4H21B—C21—H21C109.5
S1—C8—H8B108.4C23—C22—C4177.2 (3)
H8A—C8—H8B107.4C22—C23—C24178.2 (4)
C14—C9—C10117.4 (3)O2—C24—C23110.1 (3)
C14—C9—C8120.8 (4)O2—C24—C25107.9 (3)
C10—C9—C8121.7 (4)C23—C24—C25110.3 (3)
C9—C10—C11121.3 (3)O2—C24—C26107.6 (3)
C9—C10—H10119.4C23—C24—C26108.2 (3)
C11—C10—H10119.4C25—C24—C26112.7 (4)
C10—C11—C12121.2 (3)C24—C25—H25A109.5
C10—C11—H11119.4C24—C25—H25B109.5
C12—C11—H11119.4H25A—C25—H25B109.5
C13—C12—C11117.1 (3)C24—C25—H25C109.5
C13—C12—C15121.9 (3)H25A—C25—H25C109.5
C11—C12—C15120.8 (3)H25B—C25—H25C109.5
C14—C13—C12121.3 (3)C24—C26—H26A109.5
C14—C13—H13119.3C24—C26—H26B109.5
C12—C13—H13119.3H26A—C26—H26B109.5
C9—C14—C13121.3 (3)C24—C26—H26C109.5
C9—C14—H14119.3H26A—C26—H26C109.5
C13—C14—H14119.3H26B—C26—H26C109.5
C12—C15—S2116.6 (2)C19—O1—H1109.5
C12—C15—H15A108.2C24—O2—H2109.5
S2—C15—H15A108.2C7—S1—C8103.91 (18)
C12—C15—H15B108.2C15—S2—C16104.56 (16)
C6—C1—C2—C3−2.0 (4)S1—C8—C9—C10−59.7 (4)
C17—C1—C2—C3−176.6 (3)C14—C9—C10—C11−5.7 (5)
C6—C1—C2—C7174.1 (3)C8—C9—C10—C11170.3 (3)
C17—C1—C2—C7−0.6 (4)C9—C10—C11—C121.0 (5)
C1—C2—C3—C43.4 (4)C10—C11—C12—C134.4 (5)
C7—C2—C3—C4−172.6 (3)C10—C11—C12—C15−171.8 (3)
C2—C3—C4—C5−0.9 (4)C11—C12—C13—C14−5.1 (5)
C2—C3—C4—C22174.8 (3)C15—C12—C13—C14171.1 (3)
C3—C4—C5—C6−3.0 (4)C10—C9—C14—C135.0 (5)
C22—C4—C5—C6−178.7 (3)C8—C9—C14—C13−171.0 (3)
C3—C4—C5—C16173.2 (3)C12—C13—C14—C90.4 (5)
C22—C4—C5—C16−2.5 (4)C13—C12—C15—S2−43.9 (4)
C4—C5—C6—C14.5 (4)C11—C12—C15—S2132.2 (3)
C16—C5—C6—C1−171.7 (3)C6—C5—C16—S264.3 (3)
C2—C1—C6—C5−2.1 (4)C4—C5—C16—S2−111.7 (3)
C17—C1—C6—C5172.7 (3)C2—C7—S1—C866.4 (3)
C3—C2—C7—S147.5 (4)C9—C8—S1—C7−66.4 (3)
C1—C2—C7—S1−128.4 (3)C12—C15—S2—C16−68.5 (3)
S1—C8—C9—C14116.1 (3)C5—C16—S2—C1562.2 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.992.777 (4)161
O2—H2···O1ii0.822.032.808 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.992.777 (4)161
O2—H2⋯O1ii0.822.032.808 (3)158

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5,8-Dibromo-15,18-dimeth-oxy-2,11-dithia-[3.3]paracyclo-phane.

Authors:  Guojun Jin; Yinghui Lu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  2 in total

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