| Literature DB >> 22199866 |
Abstract
IN THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 2,2'-dimethyl-4,4'-(3,10-dithia-tricyclo-[10.2.2.2(5,8)]octa-deca-1(14),5,7,12,15,17-hexaen-6,17-di-yl)dibut-3-yn-2-ol], C(26)H(28)O(2)S(2), mol-ecules are linked by O-H⋯O hydrogen bonds, forming a tubular chain which runs parallel to the b axis. The tubular structure is reinforced by π-π stacking inter-actions [centroid-centroid distance = 3.6332(16Å].Entities:
Year: 2011 PMID: 22199866 PMCID: PMC3239018 DOI: 10.1107/S1600536811048446
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C26H28O2S2 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 1923 reflections |
| θ = 2.4–21.8° | |
| µ = 0.25 mm−1 | |
| β = 108.113 (2)° | Block, colourless |
| 0.20 × 0.10 × 0.10 mm | |
| Bruker SMART CCD area-detector diffractometer | 4646 independent reflections |
| Radiation source: fine-focus sealed tube | 2596 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 14956 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4646 reflections | (Δ/σ)max < 0.001 |
| 277 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 1.00428 (17) | 0.1057 (2) | 0.17980 (12) | 0.0432 (7) | |
| C2 | 0.91906 (18) | 0.1194 (2) | 0.15785 (12) | 0.0439 (7) | |
| C3 | 0.88756 (18) | 0.2274 (2) | 0.15218 (12) | 0.0467 (7) | |
| H3 | 0.8308 | 0.2376 | 0.1396 | 0.056* | |
| C4 | 0.93876 (18) | 0.3215 (2) | 0.16488 (12) | 0.0427 (7) | |
| C5 | 1.02399 (17) | 0.3086 (2) | 0.18464 (12) | 0.0432 (7) | |
| C6 | 1.05457 (18) | 0.1999 (2) | 0.19349 (12) | 0.0479 (8) | |
| H6 | 1.1110 | 0.1896 | 0.2092 | 0.057* | |
| C7 | 0.86268 (19) | 0.0188 (2) | 0.13702 (14) | 0.0607 (9) | |
| H7A | 0.8323 | 0.0059 | 0.1639 | 0.073* | |
| H7B | 0.8966 | −0.0472 | 0.1380 | 0.073* | |
| C8 | 0.8537 (3) | 0.0327 (3) | 0.01972 (17) | 0.0937 (13) | |
| H8A | 0.8882 | −0.0341 | 0.0274 | 0.112* | |
| H8B | 0.8182 | 0.0278 | −0.0197 | 0.112* | |
| C9 | 0.9086 (2) | 0.1353 (3) | 0.02529 (14) | 0.0646 (9) | |
| C10 | 0.8766 (2) | 0.2425 (3) | 0.01542 (15) | 0.0699 (10) | |
| H10 | 0.8201 | 0.2520 | −0.0005 | 0.084* | |
| C11 | 0.9268 (2) | 0.3362 (3) | 0.02867 (14) | 0.0615 (9) | |
| H11 | 0.9034 | 0.4077 | 0.0221 | 0.074* | |
| C12 | 1.0111 (2) | 0.3257 (3) | 0.05155 (13) | 0.0555 (8) | |
| C13 | 1.0431 (2) | 0.2181 (3) | 0.05674 (14) | 0.0658 (9) | |
| H13 | 1.0999 | 0.2083 | 0.0691 | 0.079* | |
| C14 | 0.9928 (2) | 0.1248 (3) | 0.04403 (14) | 0.0644 (9) | |
| H14 | 1.0162 | 0.0533 | 0.0482 | 0.077* | |
| C15 | 1.0646 (2) | 0.4279 (3) | 0.07326 (15) | 0.0728 (10) | |
| H15A | 1.0291 | 0.4911 | 0.0742 | 0.087* | |
| H15B | 1.0930 | 0.4460 | 0.0457 | 0.087* | |
| C16 | 1.08110 (18) | 0.4088 (2) | 0.19252 (14) | 0.0566 (9) | |
| H16A | 1.1188 | 0.4074 | 0.2314 | 0.068* | |
| H16B | 1.0486 | 0.4772 | 0.1885 | 0.068* | |
| C17 | 1.04174 (18) | −0.0044 (2) | 0.18399 (12) | 0.0488 (8) | |
| C18 | 1.07335 (18) | −0.0932 (3) | 0.18470 (13) | 0.0528 (8) | |
| C19 | 1.1114 (2) | −0.2046 (3) | 0.18242 (14) | 0.0586 (9) | |
| C20 | 1.0999 (3) | −0.2365 (3) | 0.12062 (17) | 0.1061 (15) | |
| H20A | 1.1261 | −0.3076 | 0.1194 | 0.159* | |
| H20B | 1.1241 | −0.1796 | 0.1030 | 0.159* | |
| H20C | 1.0423 | −0.2424 | 0.1002 | 0.159* | |
| C21 | 1.2026 (2) | −0.2005 (3) | 0.21646 (18) | 0.0865 (12) | |
| H21A | 1.2090 | −0.1789 | 0.2554 | 0.130* | |
| H21B | 1.2297 | −0.1465 | 0.1994 | 0.130* | |
| H21C | 1.2266 | −0.2736 | 0.2161 | 0.130* | |
| C22 | 0.90358 (18) | 0.4331 (3) | 0.15376 (13) | 0.0492 (8) | |
| C23 | 0.87791 (18) | 0.5261 (3) | 0.14457 (14) | 0.0550 (8) | |
| C24 | 0.8459 (2) | 0.6417 (3) | 0.13498 (17) | 0.0758 (12) | |
| C25 | 0.8404 (3) | 0.6801 (3) | 0.0756 (2) | 0.140 (2) | |
| H25A | 0.8150 | 0.7531 | 0.0687 | 0.210* | |
| H25B | 0.8080 | 0.6273 | 0.0480 | 0.210* | |
| H25C | 0.8947 | 0.6843 | 0.0720 | 0.210* | |
| C26 | 0.7637 (2) | 0.6443 (4) | 0.1460 (2) | 0.135 (2) | |
| H26A | 0.7712 | 0.6261 | 0.1855 | 0.203* | |
| H26B | 0.7274 | 0.5902 | 0.1217 | 0.203* | |
| H26C | 0.7402 | 0.7183 | 0.1378 | 0.203* | |
| O1 | 1.07259 (14) | −0.28867 (17) | 0.20705 (10) | 0.0672 (6) | |
| H1 | 1.0921 | −0.2870 | 0.2421 | 0.101* | |
| O2 | 0.90016 (13) | 0.71742 (18) | 0.17522 (11) | 0.0744 (7) | |
| H2 | 0.9478 | 0.7048 | 0.1765 | 0.112* | |
| S1 | 0.79017 (5) | 0.03053 (7) | 0.06626 (4) | 0.0678 (3) | |
| S2 | 1.14046 (5) | 0.41556 (7) | 0.14312 (4) | 0.0590 (3) |
| C1 | 0.0508 (18) | 0.0408 (18) | 0.0387 (18) | 0.0058 (14) | 0.0149 (15) | 0.0022 (13) |
| C2 | 0.0529 (19) | 0.0422 (17) | 0.0369 (17) | 0.0019 (14) | 0.0146 (15) | 0.0054 (13) |
| C3 | 0.0460 (17) | 0.0450 (19) | 0.051 (2) | 0.0045 (14) | 0.0173 (16) | 0.0028 (15) |
| C4 | 0.0547 (19) | 0.0374 (17) | 0.0399 (18) | 0.0096 (14) | 0.0202 (15) | −0.0001 (13) |
| C5 | 0.0491 (18) | 0.0392 (17) | 0.0419 (18) | 0.0000 (14) | 0.0148 (15) | −0.0077 (13) |
| C6 | 0.0467 (17) | 0.0476 (19) | 0.048 (2) | 0.0069 (15) | 0.0132 (15) | −0.0037 (14) |
| C7 | 0.057 (2) | 0.0465 (19) | 0.075 (2) | −0.0017 (16) | 0.0148 (18) | 0.0075 (17) |
| C8 | 0.109 (3) | 0.088 (3) | 0.088 (3) | −0.035 (2) | 0.036 (3) | −0.036 (2) |
| C9 | 0.074 (3) | 0.075 (3) | 0.048 (2) | −0.011 (2) | 0.0235 (19) | −0.0121 (18) |
| C10 | 0.059 (2) | 0.089 (3) | 0.065 (3) | −0.003 (2) | 0.024 (2) | 0.001 (2) |
| C11 | 0.067 (2) | 0.068 (2) | 0.052 (2) | 0.0091 (19) | 0.0225 (19) | 0.0164 (18) |
| C12 | 0.063 (2) | 0.058 (2) | 0.045 (2) | 0.0012 (17) | 0.0159 (17) | 0.0096 (16) |
| C13 | 0.062 (2) | 0.071 (3) | 0.058 (2) | 0.004 (2) | 0.0083 (19) | −0.0029 (19) |
| C14 | 0.084 (3) | 0.058 (2) | 0.046 (2) | 0.003 (2) | 0.013 (2) | −0.0098 (17) |
| C15 | 0.077 (2) | 0.063 (2) | 0.075 (3) | −0.0068 (19) | 0.020 (2) | 0.0167 (19) |
| C16 | 0.0585 (19) | 0.0420 (18) | 0.068 (2) | 0.0066 (15) | 0.0177 (18) | −0.0097 (16) |
| C17 | 0.0575 (19) | 0.0392 (18) | 0.0475 (19) | −0.0003 (15) | 0.0131 (16) | 0.0013 (15) |
| C18 | 0.0551 (19) | 0.047 (2) | 0.052 (2) | 0.0068 (16) | 0.0108 (16) | 0.0014 (16) |
| C19 | 0.070 (2) | 0.0448 (19) | 0.059 (2) | 0.0146 (16) | 0.0179 (19) | 0.0058 (16) |
| C20 | 0.170 (4) | 0.077 (3) | 0.074 (3) | 0.028 (3) | 0.042 (3) | −0.012 (2) |
| C21 | 0.061 (2) | 0.083 (3) | 0.115 (4) | 0.020 (2) | 0.028 (2) | 0.027 (2) |
| C22 | 0.0521 (19) | 0.0460 (19) | 0.051 (2) | 0.0065 (15) | 0.0186 (16) | −0.0078 (15) |
| C23 | 0.0471 (18) | 0.045 (2) | 0.068 (2) | 0.0087 (15) | 0.0100 (17) | −0.0118 (16) |
| C24 | 0.069 (2) | 0.044 (2) | 0.083 (3) | 0.0186 (17) | −0.022 (2) | −0.0229 (19) |
| C25 | 0.212 (6) | 0.058 (3) | 0.087 (4) | 0.002 (3) | −0.046 (4) | −0.002 (2) |
| C26 | 0.056 (2) | 0.111 (4) | 0.201 (6) | 0.028 (2) | −0.014 (3) | −0.088 (4) |
| O1 | 0.0762 (16) | 0.0430 (13) | 0.0763 (17) | 0.0061 (11) | 0.0145 (14) | 0.0070 (12) |
| O2 | 0.0620 (14) | 0.0477 (13) | 0.0908 (19) | 0.0060 (11) | −0.0093 (15) | −0.0242 (12) |
| S1 | 0.0540 (5) | 0.0654 (6) | 0.0772 (7) | −0.0130 (4) | 0.0104 (5) | −0.0030 (5) |
| S2 | 0.0494 (5) | 0.0500 (5) | 0.0773 (7) | −0.0036 (4) | 0.0194 (5) | −0.0010 (4) |
| C1—C6 | 1.386 (4) | C15—S2 | 1.804 (3) |
| C1—C2 | 1.397 (4) | C15—H15A | 0.9700 |
| C1—C17 | 1.445 (4) | C15—H15B | 0.9700 |
| C2—C3 | 1.381 (4) | C16—S2 | 1.808 (3) |
| C2—C7 | 1.519 (4) | C16—H16A | 0.9700 |
| C3—C4 | 1.393 (4) | C16—H16B | 0.9700 |
| C3—H3 | 0.9300 | C17—C18 | 1.181 (4) |
| C4—C5 | 1.395 (4) | C18—C19 | 1.481 (4) |
| C4—C22 | 1.444 (4) | C19—O1 | 1.431 (4) |
| C5—C6 | 1.383 (4) | C19—C20 | 1.514 (5) |
| C5—C16 | 1.512 (4) | C19—C21 | 1.525 (4) |
| C6—H6 | 0.9300 | C20—H20A | 0.9600 |
| C7—S1 | 1.797 (3) | C20—H20B | 0.9600 |
| C7—H7A | 0.9700 | C20—H20C | 0.9600 |
| C7—H7B | 0.9700 | C21—H21A | 0.9600 |
| C8—C9 | 1.517 (5) | C21—H21B | 0.9600 |
| C8—S1 | 1.804 (4) | C21—H21C | 0.9600 |
| C8—H8A | 0.9700 | C22—C23 | 1.183 (4) |
| C8—H8B | 0.9700 | C23—C24 | 1.467 (4) |
| C9—C14 | 1.375 (4) | C24—O2 | 1.440 (4) |
| C9—C10 | 1.376 (5) | C24—C25 | 1.500 (6) |
| C10—C11 | 1.379 (4) | C24—C26 | 1.512 (5) |
| C10—H10 | 0.9300 | C25—H25A | 0.9600 |
| C11—C12 | 1.381 (4) | C25—H25B | 0.9600 |
| C11—H11 | 0.9300 | C25—H25C | 0.9600 |
| C12—C13 | 1.380 (4) | C26—H26A | 0.9600 |
| C12—C15 | 1.512 (4) | C26—H26B | 0.9600 |
| C13—C14 | 1.377 (4) | C26—H26C | 0.9600 |
| C13—H13 | 0.9300 | O1—H1 | 0.8200 |
| C14—H14 | 0.9300 | O2—H2 | 0.8200 |
| C6—C1—C2 | 119.7 (3) | S2—C15—H15B | 108.2 |
| C6—C1—C17 | 118.9 (3) | H15A—C15—H15B | 107.3 |
| C2—C1—C17 | 121.2 (3) | C5—C16—S2 | 115.1 (2) |
| C3—C2—C1 | 118.3 (3) | C5—C16—H16A | 108.5 |
| C3—C2—C7 | 120.5 (3) | S2—C16—H16A | 108.5 |
| C1—C2—C7 | 121.1 (3) | C5—C16—H16B | 108.5 |
| C2—C3—C4 | 121.5 (3) | S2—C16—H16B | 108.5 |
| C2—C3—H3 | 119.2 | H16A—C16—H16B | 107.5 |
| C4—C3—H3 | 119.2 | C18—C17—C1 | 176.4 (3) |
| C3—C4—C5 | 120.4 (2) | C17—C18—C19 | 177.1 (3) |
| C3—C4—C22 | 119.7 (3) | O1—C19—C18 | 109.8 (3) |
| C5—C4—C22 | 119.7 (3) | O1—C19—C20 | 108.4 (3) |
| C6—C5—C4 | 117.4 (3) | C18—C19—C20 | 109.8 (3) |
| C6—C5—C16 | 121.0 (3) | O1—C19—C21 | 108.7 (3) |
| C4—C5—C16 | 121.5 (2) | C18—C19—C21 | 109.8 (3) |
| C5—C6—C1 | 122.5 (3) | C20—C19—C21 | 110.3 (3) |
| C5—C6—H6 | 118.8 | C19—C20—H20A | 109.5 |
| C1—C6—H6 | 118.8 | C19—C20—H20B | 109.5 |
| C2—C7—S1 | 116.0 (2) | H20A—C20—H20B | 109.5 |
| C2—C7—H7A | 108.3 | C19—C20—H20C | 109.5 |
| S1—C7—H7A | 108.3 | H20A—C20—H20C | 109.5 |
| C2—C7—H7B | 108.3 | H20B—C20—H20C | 109.5 |
| S1—C7—H7B | 108.3 | C19—C21—H21A | 109.5 |
| H7A—C7—H7B | 107.4 | C19—C21—H21B | 109.5 |
| C9—C8—S1 | 115.6 (2) | H21A—C21—H21B | 109.5 |
| C9—C8—H8A | 108.4 | C19—C21—H21C | 109.5 |
| S1—C8—H8A | 108.4 | H21A—C21—H21C | 109.5 |
| C9—C8—H8B | 108.4 | H21B—C21—H21C | 109.5 |
| S1—C8—H8B | 108.4 | C23—C22—C4 | 177.2 (3) |
| H8A—C8—H8B | 107.4 | C22—C23—C24 | 178.2 (4) |
| C14—C9—C10 | 117.4 (3) | O2—C24—C23 | 110.1 (3) |
| C14—C9—C8 | 120.8 (4) | O2—C24—C25 | 107.9 (3) |
| C10—C9—C8 | 121.7 (4) | C23—C24—C25 | 110.3 (3) |
| C9—C10—C11 | 121.3 (3) | O2—C24—C26 | 107.6 (3) |
| C9—C10—H10 | 119.4 | C23—C24—C26 | 108.2 (3) |
| C11—C10—H10 | 119.4 | C25—C24—C26 | 112.7 (4) |
| C10—C11—C12 | 121.2 (3) | C24—C25—H25A | 109.5 |
| C10—C11—H11 | 119.4 | C24—C25—H25B | 109.5 |
| C12—C11—H11 | 119.4 | H25A—C25—H25B | 109.5 |
| C13—C12—C11 | 117.1 (3) | C24—C25—H25C | 109.5 |
| C13—C12—C15 | 121.9 (3) | H25A—C25—H25C | 109.5 |
| C11—C12—C15 | 120.8 (3) | H25B—C25—H25C | 109.5 |
| C14—C13—C12 | 121.3 (3) | C24—C26—H26A | 109.5 |
| C14—C13—H13 | 119.3 | C24—C26—H26B | 109.5 |
| C12—C13—H13 | 119.3 | H26A—C26—H26B | 109.5 |
| C9—C14—C13 | 121.3 (3) | C24—C26—H26C | 109.5 |
| C9—C14—H14 | 119.3 | H26A—C26—H26C | 109.5 |
| C13—C14—H14 | 119.3 | H26B—C26—H26C | 109.5 |
| C12—C15—S2 | 116.6 (2) | C19—O1—H1 | 109.5 |
| C12—C15—H15A | 108.2 | C24—O2—H2 | 109.5 |
| S2—C15—H15A | 108.2 | C7—S1—C8 | 103.91 (18) |
| C12—C15—H15B | 108.2 | C15—S2—C16 | 104.56 (16) |
| C6—C1—C2—C3 | −2.0 (4) | S1—C8—C9—C10 | −59.7 (4) |
| C17—C1—C2—C3 | −176.6 (3) | C14—C9—C10—C11 | −5.7 (5) |
| C6—C1—C2—C7 | 174.1 (3) | C8—C9—C10—C11 | 170.3 (3) |
| C17—C1—C2—C7 | −0.6 (4) | C9—C10—C11—C12 | 1.0 (5) |
| C1—C2—C3—C4 | 3.4 (4) | C10—C11—C12—C13 | 4.4 (5) |
| C7—C2—C3—C4 | −172.6 (3) | C10—C11—C12—C15 | −171.8 (3) |
| C2—C3—C4—C5 | −0.9 (4) | C11—C12—C13—C14 | −5.1 (5) |
| C2—C3—C4—C22 | 174.8 (3) | C15—C12—C13—C14 | 171.1 (3) |
| C3—C4—C5—C6 | −3.0 (4) | C10—C9—C14—C13 | 5.0 (5) |
| C22—C4—C5—C6 | −178.7 (3) | C8—C9—C14—C13 | −171.0 (3) |
| C3—C4—C5—C16 | 173.2 (3) | C12—C13—C14—C9 | 0.4 (5) |
| C22—C4—C5—C16 | −2.5 (4) | C13—C12—C15—S2 | −43.9 (4) |
| C4—C5—C6—C1 | 4.5 (4) | C11—C12—C15—S2 | 132.2 (3) |
| C16—C5—C6—C1 | −171.7 (3) | C6—C5—C16—S2 | 64.3 (3) |
| C2—C1—C6—C5 | −2.1 (4) | C4—C5—C16—S2 | −111.7 (3) |
| C17—C1—C6—C5 | 172.7 (3) | C2—C7—S1—C8 | 66.4 (3) |
| C3—C2—C7—S1 | 47.5 (4) | C9—C8—S1—C7 | −66.4 (3) |
| C1—C2—C7—S1 | −128.4 (3) | C12—C15—S2—C16 | −68.5 (3) |
| S1—C8—C9—C14 | 116.1 (3) | C5—C16—S2—C15 | 62.2 (3) |
| H··· | ||||
| O1—H1···O2i | 0.82 | 1.99 | 2.777 (4) | 161 |
| O2—H2···O1ii | 0.82 | 2.03 | 2.808 (3) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O2i | 0.82 | 1.99 | 2.777 (4) | 161 |
| O2—H2⋯O1ii | 0.82 | 2.03 | 2.808 (3) | 158 |
Symmetry codes: (i) ; (ii) .