Literature DB >> 22199854

5,5'-Bis(naphthalen-2-yl)-2,2'-bi(1,3,4-oxadiazole).

Haitao Wang, Xiaoshi Jia, Songnan Qu, Binglian Bai, Min Li.   

Abstract

The title mol-ecule, C(24)H(14)N(4)O(2), lies on an inversion centre and the asymmetric unit containg one half-mol-ecule. The naphthalene ring systems are twisted slightly with respect to the oxadiazole rings, making a dihedral angle of 1.36 (6)°. These mol-ecules are π-stacked along the crystallographic a axis, with an inter-planar distance of 3.337 (1) Å. Adjacent mol-ecules are slipped from the 'ideal' cofacial π-stack in both the long and short mol-ecular axis (the long mol-ecular axis is defined as the line through the naphthalene C atom in the 6-position and the mol-ecular center, the short mol-ecular axis is in the mol-ecular plane perpendicular to it). The slip distance along the long mol-ecular axis (S(1)) is 7.064 (1) Å, nearly a two-ring-length displacement. The side slip (S(2), along the short mol-ecular axis) is 1.159 (8) Å.

Entities:  

Year:  2011        PMID: 22199854      PMCID: PMC3239005          DOI: 10.1107/S1600536811048513

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 1,3,4-oxadiazole derivatives: see Schulz et al. (1997 ▶). For related structures: see Schulz et al. (2005 ▶); Qu et al. (2008 ▶); Landis et al. (2008 ▶).

Experimental

Crystal data

C24H14N4O2 M = 390.39 Monoclinic, a = 7.8982 (16) Å b = 5.7107 (11) Å c = 21.503 (5) Å β = 109.82 (3)° V = 912.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.18 × 0.14 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.983, T max = 0.989 8518 measured reflections 2091 independent reflections 1468 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.07 2091 reflections 136 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and CrystalStructure (Rigaku/MSC, 2002 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811048513/vm2137sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048513/vm2137Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H14N4O2Z = 2
Mr = 390.39F(000) = 404
Monoclinic, P21/cDx = 1.421 Mg m3
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.8982 (16) ŵ = 0.09 mm1
b = 5.7107 (11) ÅT = 293 K
c = 21.503 (5) ÅBlock, colourless
β = 109.82 (3)°0.18 × 0.14 × 0.12 mm
V = 912.4 (3) Å3
Rigaku R-AXIS RAPID diffractometer2091 independent reflections
Radiation source: fine-focus sealed tube1468 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 27.5°, θmin = 3.7°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.983, Tmax = 0.989k = −7→7
8518 measured reflectionsl = −27→27
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0577P)2] where P = (Fo2 + 2Fc2)/3
2091 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.18040 (11)0.40921 (16)0.97102 (4)0.0412 (2)
N10.01904 (14)0.7350 (2)0.94532 (6)0.0482 (3)
N20.14392 (14)0.7347 (2)0.91193 (6)0.0479 (3)
C10.04644 (15)0.5425 (2)0.97855 (6)0.0407 (3)
C20.23461 (16)0.5413 (2)0.92839 (6)0.0388 (3)
C30.38061 (15)0.4564 (2)0.90721 (6)0.0373 (3)
C40.46713 (17)0.2407 (2)0.93102 (6)0.0448 (3)
H40.42870.14990.95960.054*
C50.60641 (17)0.1660 (2)0.91221 (7)0.0453 (3)
H50.66370.02560.92880.054*
C60.66520 (15)0.2993 (2)0.86777 (6)0.0389 (3)
C70.80712 (17)0.2254 (3)0.84590 (7)0.0506 (4)
H70.86810.08680.86210.061*
C80.85466 (18)0.3556 (3)0.80150 (8)0.0586 (4)
H80.94660.30370.78700.070*
C90.76681 (19)0.5674 (3)0.77722 (8)0.0565 (4)
H90.80080.65430.74680.068*
C100.63230 (17)0.6463 (3)0.79789 (6)0.0459 (3)
H100.57630.78810.78210.055*
C110.57699 (15)0.5144 (2)0.84322 (6)0.0364 (3)
C120.43475 (15)0.5888 (2)0.86414 (6)0.0379 (3)
H120.37680.72970.84850.045*
U11U22U33U12U13U23
O10.0390 (4)0.0454 (6)0.0423 (5)0.0017 (4)0.0180 (4)0.0038 (4)
N10.0447 (6)0.0538 (7)0.0506 (6)0.0060 (5)0.0222 (5)0.0051 (6)
N20.0464 (6)0.0498 (7)0.0518 (6)0.0059 (5)0.0225 (5)0.0066 (5)
C10.0343 (6)0.0481 (8)0.0402 (6)0.0009 (5)0.0133 (5)−0.0021 (6)
C20.0392 (6)0.0417 (7)0.0358 (6)−0.0030 (5)0.0131 (5)0.0017 (5)
C30.0363 (6)0.0379 (7)0.0371 (6)−0.0013 (5)0.0115 (5)−0.0009 (5)
C40.0512 (7)0.0399 (7)0.0453 (7)0.0005 (6)0.0190 (6)0.0083 (6)
C50.0481 (7)0.0357 (7)0.0495 (7)0.0050 (5)0.0130 (6)0.0036 (6)
C60.0366 (6)0.0377 (7)0.0403 (6)0.0001 (5)0.0103 (5)−0.0054 (5)
C70.0433 (7)0.0485 (9)0.0588 (8)0.0042 (6)0.0156 (6)−0.0084 (7)
C80.0438 (7)0.0718 (11)0.0680 (9)−0.0010 (7)0.0290 (7)−0.0128 (8)
C90.0522 (8)0.0680 (11)0.0569 (8)−0.0083 (7)0.0285 (7)0.0018 (8)
C100.0450 (7)0.0465 (8)0.0472 (7)−0.0033 (6)0.0168 (6)0.0036 (6)
C110.0363 (6)0.0366 (7)0.0355 (6)−0.0036 (5)0.0110 (5)−0.0029 (5)
C120.0395 (6)0.0340 (7)0.0391 (6)0.0019 (5)0.0118 (5)0.0026 (5)
O1—C11.3568 (15)C6—C71.4190 (17)
O1—C21.3636 (15)C6—C111.4228 (18)
N1—C11.2889 (18)C7—C81.360 (2)
N1—N21.4031 (16)C7—H70.9300
N2—C21.2986 (17)C8—C91.404 (2)
C1—C1i1.443 (3)C8—H80.9300
C2—C31.4588 (17)C9—C101.3600 (19)
C3—C121.3714 (17)C9—H90.9300
C3—C41.4175 (18)C10—C111.4130 (18)
C4—C51.3629 (19)C10—H100.9300
C4—H40.9300C11—C121.4098 (17)
C5—C61.4173 (19)C12—H120.9300
C5—H50.9300
C1—O1—C2101.84 (10)C7—C6—C11118.45 (12)
C1—N1—N2105.54 (11)C8—C7—C6120.48 (14)
C2—N2—N1106.25 (11)C8—C7—H7119.8
N1—C1—O1113.78 (11)C6—C7—H7119.8
N1—C1—C1i127.93 (15)C7—C8—C9120.87 (14)
O1—C1—C1i118.28 (15)C7—C8—H8119.6
N2—C2—O1112.58 (11)C9—C8—H8119.6
N2—C2—C3128.24 (12)C10—C9—C8120.39 (14)
O1—C2—C3119.18 (12)C10—C9—H9119.8
C12—C3—C4120.03 (11)C8—C9—H9119.8
C12—C3—C2119.22 (12)C9—C10—C11120.50 (14)
C4—C3—C2120.75 (12)C9—C10—H10119.8
C5—C4—C3120.24 (12)C11—C10—H10119.8
C5—C4—H4119.9C12—C11—C10121.71 (12)
C3—C4—H4119.9C12—C11—C6119.00 (11)
C4—C5—C6120.93 (13)C10—C11—C6119.29 (11)
C4—C5—H5119.5C3—C12—C11120.93 (12)
C6—C5—H5119.5C3—C12—H12119.5
C5—C6—C7122.68 (13)C11—C12—H12119.5
C5—C6—C11118.86 (11)
C1—N1—N2—C20.01 (14)C4—C5—C6—C110.41 (19)
N2—N1—C1—O10.15 (15)C5—C6—C7—C8177.78 (13)
N2—N1—C1—C1i179.92 (16)C11—C6—C7—C8−1.28 (19)
C2—O1—C1—N1−0.23 (14)C6—C7—C8—C91.1 (2)
C2—O1—C1—C1i179.97 (14)C7—C8—C9—C100.1 (2)
N1—N2—C2—O1−0.16 (14)C8—C9—C10—C11−1.1 (2)
N1—N2—C2—C3−179.98 (12)C9—C10—C11—C12−178.28 (12)
C1—O1—C2—N20.24 (13)C9—C10—C11—C60.84 (19)
C1—O1—C2—C3−179.92 (11)C5—C6—C11—C120.36 (17)
N2—C2—C3—C12−0.4 (2)C7—C6—C11—C12179.46 (11)
O1—C2—C3—C12179.76 (10)C5—C6—C11—C10−178.78 (11)
N2—C2—C3—C4179.09 (12)C7—C6—C11—C100.33 (17)
O1—C2—C3—C4−0.72 (18)C4—C3—C12—C11−0.42 (18)
C12—C3—C4—C51.19 (19)C2—C3—C12—C11179.11 (11)
C2—C3—C4—C5−178.33 (12)C10—C11—C12—C3178.77 (11)
C3—C4—C5—C6−1.2 (2)C6—C11—C12—C3−0.35 (18)
C4—C5—C6—C7−178.66 (12)
  3 in total

Review 1.  Self-organization of substituted 1,3,4-oxadiazoles in the solid state and at surfaces.

Authors:  Burkhard Schulz; Ingo Orgzall; Anke Freydank; Chenggang Xü
Journal:  Adv Colloid Interface Sci       Date:  2005-08-24       Impact factor: 12.984

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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