Literature DB >> 22199840

2-n-Butyl-6-chloro-1-(2,4-dimethyl-phenyl-sulfon-yl)-1H-benzimidazole-2-n-butyl-5-chloro-1-(2,4-dimethyl-phenyl-sulfon-yl)-1H-benzimidazole (0.759/0.241).

K B Abdireymov, N S Mukhamedov, R Ya Okmanov, M J Ayimbetov, B Tashkhodjaev.   

Abstract

The title compound, 0.759C(19)H(21)ClN(2)O(2)S·0.241C(19)H(21)ClN(2)O(2)S, was synthesized by aryl-sulfonyl-ation of 2-n-butyl-5-chloro-1H-benzimidazole in the presence of triethyl-amine. The crystal structure is composed of two mol-ecules, 2-n-butyl-6-chloro-1-(2,4-dimethylphenyl-sulfon-yl)-1H-benzimidazole and 1-(2,4-dimethylphenyl-sulfon-yl)-2-n-butyl-5-chloro-1H-benz-imidazole, in the refined ratio of 0.759 (4):0.241 (4) disordered at the same position in the unit cell. The mol-ecule has three essentially planar fragments viz. benzimidazole, dimethyl-benzene and n-butyl (r.m.s. deviations of 0.009, 0.024 and 0.003 Å, respectively). The angle between the benzimidazole and dimethyl-benzene fragments is 86.0 (1)°. In the crystal, pairs of inter-molecular C-H⋯π inter-actions form centrosymmetrical dimers, which are linked by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22199840      PMCID: PMC3238991          DOI: 10.1107/S1600536811047957

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmaceutical properties of benz­imid­azole derivatives, see: Koči et al. (2002 ▶); Matsuno et al. (2000 ▶); Garuti et al. (1999 ▶). For the synthesis, biological activity and related structures of 2-n-butyl­benzimidazole derivatives, see: Kubo et al. (1993a ▶,b ▶); For the aryl­sulfonyl­ation of benzimidazole derivatives, see: Abdireimov et al. (2010 ▶).

Experimental

Crystal data

0.759C19H21ClN2O2S·0.241C19H21ClN2O2S M = 376.89 Triclinic, a = 8.7340 (17) Å b = 10.251 (2) Å c = 11.390 (2) Å α = 71.29 (3)° β = 78.38 (3)° γ = 76.75 (3)° V = 931.1 (3) Å3 Z = 2 Cu Kα radiation μ = 2.98 mm−1 T = 290 K 0.68 × 0.45 × 0.20 mm

Data collection

Stoe Stadi-4 four-circle diffractometer Absorption correction: ψ scan (X-RED; Stoe & Cie, 1997 ▶) T min = 0.250, T max = 0.551 2722 measured reflections 2714 independent reflections 2460 reflections with I > 2σ(I) θmax = 60.0° 3 standard reflections every 60 min intensity decay: 10.4%

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.191 S = 1.12 2714 reflections 240 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.45 e Å−3 Data collection: STADI4 (Stoe & Cie, 1997 ▶); cell refinement: STADI4; data reduction: X-RED (Stoe & Cie, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047957/im2330sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047957/im2330Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
0.7590.241C19H21ClN2O2S·0.2410.241C19H21ClN2O2SZ = 2
Mr = 376.89F(000) = 396
Triclinic, P1Dx = 1.344 Mg m3
Hall symbol: -P 1Melting point < 381(9) K
a = 8.7340 (17) ÅCu Kα radiation, λ = 1.54184 Å
b = 10.251 (2) ÅCell parameters from 13 reflections
c = 11.390 (2) Åθ = 10–20°
α = 71.29 (3)°µ = 2.98 mm1
β = 78.38 (3)°T = 290 K
γ = 76.75 (3)°Prizmatic, colorless
V = 931.1 (3) Å30.68 × 0.45 × 0.20 mm
Stoe Stadi-4 four-circle diffractometer2460 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
graphiteθmax = 60.0°, θmin = 4.1°
Scan width (ω) = 1.56 – 1.80, scan ratio 2θ:ω = 1.00 I(Net) and sigma(I) calculated according to Blessing (1987)h = −9→9
Absorption correction: ψ scan (X-RED; Stoe & Cie, 1997)k = −10→11
Tmin = 0.250, Tmax = 0.551l = 0→12
2722 measured reflections3 standard reflections every 60 min
2714 independent reflections intensity decay: 10.4%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.069H-atom parameters constrained
wR(F2) = 0.191w = 1/[σ2(Fo2) + (0.0919P)2 + 1.1929P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
2714 reflectionsΔρmax = 0.35 e Å3
240 parametersΔρmin = −0.45 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.026 (3)
Experimental. Empirical absorption correction using ψ Scan. Reflections used Mu * R = 0.00 H K L, θ, χ, Imin/Imax: -1 -2 4 45.0 82.7 0.4551H NMR (400 MHz, CDCl~3~): 1-(2,4-dimethylbenzenesulfonyl)-2-n-butyl-6- chloro-1H-benzimidazole (A). 7.97 (1H, d, J═2.1 Hz, H-7), 7.49 (1H, d, J═8.3 Hz, H-17), 7.49 (1H, d, J═8.5 Hz, H-4), 7.37 (2H, d, J═7.9 Hz, H-14, 16), 7.29 (1H, dd, J═2.o, J═8.5 H-5), 3.08 (2H, m, CH2-8), 2.34 (6H, s, CH3-18, 19), 1.73 (2H, m, CH2-9), 1.37 (2H, m, CH2-10), 0.89 (3H, t, J═7.3 Hz, CH3-11).1-(2,4-dimethylbenzenesulfonyl)-2-n-butyl-5-chloro- 1H-benzimidazole (B). 7.95 (1H, d, J═8.7 Hz, H-7), 7.78 (1H, d, J═8.3 Hz, H-17), 7.52 (1H, d, J═2.0 Hz, H-4), 7.35 (2H, d, J═7.9 Hz, H-14, 16), 7.31 (1H, dd, J═2.o, J═8.5 H-6), 3.08 (2H, m, CH2-8), 2.34 (6H, s, CH3-18, 19), 1.73 (2H, m, CH2-9), 1.37 (2H, m, CH2-10), 0.90 (3H, t, J═7.5 Hz, CH3-11).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.25613 (12)0.65554 (11)0.19565 (9)0.0537 (4)
O10.2520 (4)0.5625 (3)0.1267 (3)0.0660 (9)
O20.1230 (4)0.7622 (3)0.2077 (3)0.0647 (9)
N10.2783 (4)0.5558 (3)0.3424 (3)0.0511 (8)
N30.3767 (4)0.3796 (4)0.4993 (3)0.0606 (10)
C20.3863 (5)0.4310 (4)0.3785 (4)0.0552 (10)
C3A0.2567 (5)0.4705 (4)0.5479 (4)0.0552 (10)
C40.1997 (6)0.4606 (5)0.6731 (4)0.0688 (13)
H4A0.24280.38740.73700.083*
C50.0780 (6)0.5624 (5)0.6986 (4)0.0658 (12)
H5A0.03770.55840.78150.079*0.759 (4)
C60.0142 (5)0.6701 (5)0.6052 (4)0.0604 (11)
H6A−0.06840.73720.62690.072*0.241 (4)
C70.0675 (5)0.6835 (5)0.4791 (4)0.0573 (11)
H7A0.02260.75640.41580.069*
C7A0.1909 (5)0.5817 (4)0.4545 (4)0.0498 (10)
C80.4990 (5)0.3662 (5)0.2876 (4)0.0606 (11)
H8A0.57040.43000.23850.073*
H8B0.43970.35190.23060.073*
C90.5963 (6)0.2267 (5)0.3510 (4)0.0640 (12)
H9A0.65860.24090.40610.077*
H9B0.52550.16310.40160.077*
C100.7063 (7)0.1625 (5)0.2552 (5)0.0754 (14)
H10A0.77740.22610.20520.090*
H10B0.64390.14960.19970.090*
C110.8036 (7)0.0226 (6)0.3163 (6)0.0918 (18)
H11A0.8725−0.01410.25280.138*
H11B0.7337−0.04170.36380.138*
H11C0.86620.03490.37100.138*
C120.4289 (5)0.7259 (4)0.1379 (4)0.0498 (10)
C130.4696 (5)0.8270 (4)0.1800 (4)0.0553 (11)
C140.6081 (6)0.8746 (4)0.1239 (4)0.0603 (11)
H14A0.63560.94130.15120.072*
C150.7100 (5)0.8296 (5)0.0291 (4)0.0615 (11)
C160.6664 (6)0.7320 (5)−0.0118 (4)0.0657 (12)
H16A0.73170.6998−0.07570.079*
C170.5288 (6)0.6823 (5)0.0405 (4)0.0609 (11)
H17A0.50090.61780.01050.073*
C180.3722 (6)0.8773 (5)0.2876 (5)0.0702 (13)
H18A0.40750.95810.29060.105*
H18B0.38500.80430.36460.105*
H18C0.26230.90140.27610.105*
C190.8634 (6)0.8809 (7)−0.0233 (6)0.0881 (16)
H19A0.90190.8631−0.10290.132*
H19B0.93990.83290.03310.132*
H19C0.84710.9796−0.03400.132*
Cl1−0.1412 (2)0.79798 (18)0.64266 (16)0.0782 (7)0.759 (4)
Cl1'0.0475 (7)0.5668 (7)0.8540 (5)0.081 (2)0.241 (4)
U11U22U33U12U13U23
S10.0575 (7)0.0540 (7)0.0473 (6)−0.0039 (5)−0.0118 (5)−0.0129 (5)
O10.077 (2)0.073 (2)0.0594 (18)−0.0196 (16)−0.0128 (15)−0.0283 (16)
O20.0621 (18)0.0621 (18)0.0554 (18)0.0096 (14)−0.0143 (14)−0.0076 (14)
N10.056 (2)0.0460 (18)0.0433 (18)−0.0003 (15)−0.0038 (15)−0.0104 (15)
N30.068 (2)0.053 (2)0.054 (2)0.0043 (17)−0.0096 (17)−0.0153 (17)
C20.056 (2)0.049 (2)0.059 (3)0.0009 (19)−0.0074 (19)−0.020 (2)
C3A0.058 (2)0.050 (2)0.054 (2)0.0005 (19)−0.0065 (19)−0.0173 (19)
C40.082 (3)0.066 (3)0.049 (3)0.000 (2)−0.008 (2)−0.013 (2)
C50.073 (3)0.070 (3)0.049 (2)−0.009 (2)0.002 (2)−0.019 (2)
C60.054 (2)0.062 (3)0.063 (3)−0.006 (2)0.001 (2)−0.025 (2)
C70.053 (2)0.056 (2)0.056 (3)0.0005 (19)−0.0031 (19)−0.016 (2)
C7A0.051 (2)0.049 (2)0.046 (2)−0.0048 (18)−0.0043 (17)−0.0128 (18)
C80.063 (3)0.058 (3)0.058 (3)0.003 (2)−0.004 (2)−0.024 (2)
C90.063 (3)0.060 (3)0.065 (3)0.006 (2)−0.008 (2)−0.025 (2)
C100.084 (3)0.058 (3)0.078 (3)0.011 (2)−0.008 (3)−0.028 (3)
C110.082 (4)0.075 (4)0.112 (5)0.023 (3)−0.021 (3)−0.041 (3)
C120.057 (2)0.045 (2)0.045 (2)−0.0020 (18)−0.0097 (18)−0.0132 (17)
C130.067 (3)0.045 (2)0.053 (2)0.001 (2)−0.015 (2)−0.0169 (19)
C140.071 (3)0.049 (2)0.063 (3)−0.011 (2)−0.021 (2)−0.011 (2)
C150.063 (3)0.062 (3)0.053 (2)−0.008 (2)−0.013 (2)−0.006 (2)
C160.071 (3)0.068 (3)0.054 (3)−0.013 (2)0.002 (2)−0.016 (2)
C170.076 (3)0.057 (3)0.051 (2)−0.010 (2)−0.004 (2)−0.021 (2)
C180.085 (3)0.065 (3)0.065 (3)−0.004 (2)−0.009 (2)−0.033 (2)
C190.076 (4)0.096 (4)0.086 (4)−0.026 (3)−0.013 (3)−0.010 (3)
Cl10.0714 (11)0.0803 (12)0.0733 (11)0.0080 (8)0.0057 (8)−0.0333 (9)
Cl1'0.077 (4)0.100 (4)0.069 (3)−0.018 (3)0.010 (3)−0.039 (3)
S1—O21.419 (3)C9—H9A0.9700
S1—O11.427 (3)C9—H9B0.9700
S1—N11.679 (3)C10—C111.517 (7)
S1—C121.739 (4)C10—H10A0.9700
N1—C21.401 (5)C10—H10B0.9700
N1—C7A1.420 (5)C11—H11A0.9600
N3—C21.298 (6)C11—H11B0.9600
N3—C3A1.387 (5)C11—H11C0.9600
C2—C81.488 (6)C12—C171.394 (6)
C3A—C7A1.389 (6)C12—C131.410 (6)
C3A—C41.392 (6)C13—C141.366 (6)
C4—C51.366 (7)C13—C181.508 (6)
C4—H4A0.9300C14—C151.383 (7)
C5—C61.365 (7)C14—H14A0.9300
C5—Cl1'1.750 (7)C15—C161.382 (7)
C5—H5A0.9300C15—C191.493 (7)
C6—C71.390 (6)C16—C171.362 (7)
C6—Cl11.747 (5)C16—H16A0.9300
C6—H6A0.9300C17—H17A0.9300
C7—C7A1.371 (6)C18—H18A0.9600
C7—H7A0.9300C18—H18B0.9600
C8—C91.522 (6)C18—H18C0.9600
C8—H8A0.9700C19—H19A0.9600
C8—H8B0.9700C19—H19B0.9600
C9—C101.515 (6)C19—H19C0.9600
O2—S1—O1119.5 (2)C8—C9—H9B109.4
O2—S1—N1105.51 (18)H9A—C9—H9B108.0
O1—S1—N1106.36 (18)C9—C10—C11112.0 (5)
O2—S1—C12110.7 (2)C9—C10—H10A109.2
O1—S1—C12108.22 (19)C11—C10—H10A109.2
N1—S1—C12105.50 (18)C9—C10—H10B109.2
C2—N1—C7A106.4 (3)C11—C10—H10B109.2
C2—N1—S1126.9 (3)H10A—C10—H10B107.9
C7A—N1—S1126.7 (3)C10—C11—H11A109.5
C2—N3—C3A105.6 (3)C10—C11—H11B109.5
N3—C2—N1112.4 (4)H11A—C11—H11B109.5
N3—C2—C8124.4 (4)C10—C11—H11C109.5
N1—C2—C8123.2 (4)H11A—C11—H11C109.5
N3—C3A—C7A112.1 (4)H11B—C11—H11C109.5
N3—C3A—C4128.0 (4)C17—C12—C13118.9 (4)
C7A—C3A—C4119.9 (4)C17—C12—S1116.9 (3)
C5—C4—C3A117.5 (4)C13—C12—S1124.2 (3)
C5—C4—H4A121.3C14—C13—C12117.5 (4)
C3A—C4—H4A121.3C14—C13—C18119.6 (4)
C6—C5—C4121.5 (4)C12—C13—C18122.8 (4)
C6—C5—Cl1'122.7 (4)C13—C14—C15124.2 (4)
C4—C5—Cl1'114.0 (4)C13—C14—H14A117.9
C6—C5—H5A119.2C15—C14—H14A117.9
C4—C5—H5A119.2C16—C15—C14117.3 (4)
C5—C6—C7122.8 (4)C16—C15—C19121.5 (5)
C5—C6—Cl1119.8 (4)C14—C15—C19121.2 (5)
C7—C6—Cl1117.4 (4)C17—C16—C15120.8 (4)
C5—C6—H6A118.6C17—C16—H16A119.6
C7—C6—H6A118.6C15—C16—H16A119.6
C7A—C7—C6115.2 (4)C16—C17—C12121.4 (4)
C7A—C7—H7A122.4C16—C17—H17A119.3
C6—C7—H7A122.4C12—C17—H17A119.3
C7—C7A—C3A123.0 (4)C13—C18—H18A109.5
C7—C7A—N1133.5 (4)C13—C18—H18B109.5
C3A—C7A—N1103.5 (3)H18A—C18—H18B109.5
C2—C8—C9112.6 (4)C13—C18—H18C109.5
C2—C8—H8A109.1H18A—C18—H18C109.5
C9—C8—H8A109.1H18B—C18—H18C109.5
C2—C8—H8B109.1C15—C19—H19A109.5
C9—C8—H8B109.1C15—C19—H19B109.5
H8A—C8—H8B107.8H19A—C19—H19B109.5
C10—C9—C8111.0 (4)C15—C19—H19C109.5
C10—C9—H9A109.4H19A—C19—H19C109.5
C8—C9—H9A109.4H19B—C19—H19C109.5
C10—C9—H9B109.4
O2—S1—N1—C2174.6 (3)C4—C3A—C7A—N1180.0 (4)
O1—S1—N1—C246.7 (4)C2—N1—C7A—C7−177.5 (5)
C12—S1—N1—C2−68.1 (4)S1—N1—C7A—C72.5 (7)
O2—S1—N1—C7A−5.4 (4)C2—N1—C7A—C3A0.9 (4)
O1—S1—N1—C7A−133.3 (3)S1—N1—C7A—C3A−179.1 (3)
C12—S1—N1—C7A111.9 (4)N3—C2—C8—C93.6 (7)
C3A—N3—C2—N11.0 (5)N1—C2—C8—C9−176.6 (4)
C3A—N3—C2—C8−179.2 (4)C2—C8—C9—C10178.5 (4)
C7A—N1—C2—N3−1.2 (5)C8—C9—C10—C11−179.4 (5)
S1—N1—C2—N3178.8 (3)O2—S1—C12—C17−133.0 (3)
C7A—N1—C2—C8179.0 (4)O1—S1—C12—C17−0.2 (4)
S1—N1—C2—C8−1.0 (6)N1—S1—C12—C17113.3 (3)
C2—N3—C3A—C7A−0.4 (5)O2—S1—C12—C1344.3 (4)
C2—N3—C3A—C4179.3 (5)O1—S1—C12—C13177.1 (3)
N3—C3A—C4—C5−179.1 (5)N1—S1—C12—C13−69.4 (4)
C7A—C3A—C4—C50.6 (7)C17—C12—C13—C14−1.5 (6)
C3A—C4—C5—C60.0 (8)S1—C12—C13—C14−178.7 (3)
C3A—C4—C5—Cl1'−164.9 (4)C17—C12—C13—C18−177.9 (4)
C4—C5—C6—C70.1 (8)S1—C12—C13—C184.9 (6)
Cl1'—C5—C6—C7163.8 (4)C12—C13—C14—C150.0 (7)
C4—C5—C6—Cl1−179.9 (4)C18—C13—C14—C15176.5 (4)
Cl1'—C5—C6—Cl1−16.3 (7)C13—C14—C15—C161.0 (7)
C5—C6—C7—C7A−0.9 (7)C13—C14—C15—C19−176.8 (4)
Cl1—C6—C7—C7A179.2 (3)C14—C15—C16—C17−0.4 (7)
C6—C7—C7A—C3A1.5 (6)C19—C15—C16—C17177.4 (5)
C6—C7—C7A—N1179.6 (4)C15—C16—C17—C12−1.1 (7)
N3—C3A—C7A—C7178.3 (4)C13—C12—C17—C162.1 (7)
C4—C3A—C7A—C7−1.4 (7)S1—C12—C17—C16179.5 (4)
N3—C3A—C7A—N1−0.3 (5)
Cg3 is the centroid of the C12–C17 ring.
D—H···AD—HH···AD···AD—H···A
C19—H19B···O2i0.962.623.554 (7)165
C4—H4A···Cg3ii0.932.763.665 (8)163
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C12–C17 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C19—H19B⋯O2i0.962.623.554 (7)165
C4—H4ACg3ii0.932.763.665 (8)163

Symmetry codes: (i) ; (ii) .

  6 in total

1.  Heterocyclic benzazole derivatives with antimycobacterial in vitro activity.

Authors:  Jan Kocí; Vera Klimesová; Karel Waisser; Jarmila Kaustová; Hans-Martin Dahse; Ute Möllmann
Journal:  Bioorg Med Chem Lett       Date:  2002-11-18       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antiviral activity of some N-benzenesulphonylbenzimidazoles.

Authors:  L Garuti; M Roberti; C Cermelli
Journal:  Bioorg Med Chem Lett       Date:  1999-09-06       Impact factor: 2.823

4.  Synthesis and antitumor activity of benzimidazolyl-1,3,5-triazine and benzimidazolylpyrimidine derivatives.

Authors:  T Matsuno; M Karo; H Sasahara; T Watanabe; M Inaba; M Takahashi; S I Yaguchi; K Yoshioka; M Sakato; S Kawashima
Journal:  Chem Pharm Bull (Tokyo)       Date:  2000-11       Impact factor: 1.645

5.  Nonpeptide angiotensin II receptor antagonists. Synthesis and biological activity of potential prodrugs of benzimidazole-7-carboxylic acids.

Authors:  K Kubo; Y Kohara; Y Yoshimura; Y Inada; Y Shibouta; Y Furukawa; T Kato; K Nishikawa; T Naka
Journal:  J Med Chem       Date:  1993-08-06       Impact factor: 7.446

6.  Nonpeptide angiotensin II receptor antagonists. Synthesis and biological activity of benzimidazoles.

Authors:  K Kubo; Y Inada; Y Kohara; Y Sugiura; M Ojima; K Itoh; Y Furukawa; K Nishikawa; T Naka
Journal:  J Med Chem       Date:  1993-06-11       Impact factor: 7.446

  6 in total

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