Literature DB >> 22199831

Morpholinium hydrogen chloranilate methanol monosolvate.

Kazuma Gotoh1, Yuki Tahara, Hiroyuki Ishida.   

Abstract

In the crystal structure of the title compound, C(4)H(10)NO(+)·C(6)HCl(2)O(4) (-)·CH(4)O, the components are held together by bifurcated O-H⋯(O,O), O-H⋯(O,Cl) and N-H⋯(O,O) hydrogen bonds into a centrosymmetric 2+2+2 aggregate. The aggregates are further connected by another bifurcated N-H⋯(O, O) hydrogen bond, forming a double-tape structure along the b axis. A weak C-H⋯O inter-action is observed between the tapes.

Entities:  

Year:  2011        PMID: 22199831      PMCID: PMC3238982          DOI: 10.1107/S1600536811047891

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Ishida & Kashino (1999 ▶). For 35Cl nuclear quadrupole resonance studies on proton-transfer in chloranilic acid–organic base systems, see: Ikeda et al. (2005 ▶); Asaji, Hoshino et al. (2010 ▶); Asaji, Seliger et al. (2010 ▶).

Experimental

Crystal data

C4H10NOC6HCl2O4 −·CH4O M = 328.15 Triclinic, a = 9.11845 (17) Å b = 9.39881 (17) Å c = 9.96935 (18) Å α = 107.8089 (7)° β = 107.5510 (7)° γ = 110.2398 (7)° V = 679.25 (2) Å3 Z = 2 Mo Kα radiation μ = 0.50 mm−1 T = 170 K 0.45 × 0.41 × 0.30 mm

Data collection

Rigaku R-AXIS RAPID II diffractometer Absorption correction: numerical (NUMABS; Higashi, 1999 ▶) T min = 0.817, T max = 0.860 17817 measured reflections 3928 independent reflections 3636 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.077 S = 1.08 3928 reflections 197 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.28 e Å−3 Data collection: PROCESS-AUTO (Rigaku/MSC, 2004 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) General, I. DOI: 10.1107/S1600536811047891/lh5377sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047891/lh5377Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047891/lh5377Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H10NO+·C6HCl2O4·CH4OZ = 2
Mr = 328.15F(000) = 340.00
Triclinic, P1Dx = 1.604 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 9.11845 (17) ÅCell parameters from 16546 reflections
b = 9.39881 (17) Åθ = 3.6–30.1°
c = 9.96935 (18) ŵ = 0.50 mm1
α = 107.8089 (7)°T = 170 K
β = 107.5510 (7)°Block, brown
γ = 110.2398 (7)°0.45 × 0.41 × 0.30 mm
V = 679.25 (2) Å3
Rigaku R-AXIS RAPID II diffractometer3636 reflections with I > 2σ(I)
Detector resolution: 10.00 pixels mm-1Rint = 0.025
ω scansθmax = 30.0°
Absorption correction: numerical (NUMABS; Higashi, 1999)h = −12→12
Tmin = 0.817, Tmax = 0.860k = −13→13
17817 measured reflectionsl = −14→14
3928 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0459P)2 + 0.1482P] where P = (Fo2 + 2Fc2)/3
3928 reflections(Δ/σ)max = 0.001
197 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.01275 (3)0.30381 (3)0.86968 (3)0.02809 (7)
Cl20.20309 (3)0.06793 (3)0.53010 (3)0.02191 (7)
O10.71379 (10)0.00021 (10)0.82390 (9)0.02629 (15)
O20.84595 (9)0.45763 (9)0.70404 (9)0.02291 (14)
O30.50528 (8)0.35907 (8)0.55923 (8)0.01801 (13)
O40.37147 (9)−0.10742 (9)0.67309 (9)0.02464 (15)
O50.58600 (10)0.31839 (10)−0.00604 (8)0.02641 (15)
O60.80802 (9)0.70163 (9)0.66544 (10)0.02655 (16)
N10.52494 (12)0.35047 (11)0.26136 (10)0.02167 (16)
C10.67022 (12)0.08381 (11)0.76387 (10)0.01785 (16)
C20.79228 (11)0.23463 (11)0.77003 (11)0.01801 (16)
C30.73479 (11)0.32094 (10)0.70050 (10)0.01635 (15)
C40.54246 (11)0.26734 (10)0.61815 (9)0.01450 (15)
C50.42266 (11)0.12427 (11)0.61394 (10)0.01582 (15)
C60.47242 (11)0.02420 (11)0.67825 (10)0.01687 (16)
C70.70652 (13)0.42900 (12)0.27855 (11)0.02421 (18)
H7A0.78870.43000.37060.029*
H7B0.74510.54820.29620.029*
C80.70673 (13)0.32531 (13)0.12851 (12)0.02324 (18)
H8A0.82630.37740.13760.028*
H8B0.67450.20810.11500.028*
C90.41236 (13)0.23401 (14)−0.02607 (12)0.0271 (2)
H9A0.38300.1173−0.03910.033*
H9B0.32850.2242−0.12310.033*
C100.39445 (13)0.33079 (14)0.11517 (12)0.02451 (19)
H10A0.41490.44450.12400.029*
H10B0.27420.26780.10120.029*
C110.98148 (13)0.84290 (14)0.75821 (14)0.0311 (2)
H11A1.04340.83240.85080.047*
H11B0.97540.94930.79330.047*
H11C1.04480.84410.69430.047*
H1A0.520 (2)0.414 (2)0.3435 (19)0.036 (4)*
H1B0.4968 (19)0.252 (2)0.2566 (17)0.032 (4)*
H20.801 (2)0.512 (2)0.675 (2)0.052 (5)*
H60.750 (2)0.718 (2)0.609 (2)0.041 (4)*
U11U22U33U12U13U23
Cl10.01597 (11)0.02532 (12)0.03726 (14)0.00939 (9)0.00314 (9)0.01727 (10)
Cl20.01479 (10)0.02700 (12)0.02709 (12)0.01005 (8)0.00953 (8)0.01609 (9)
O10.0255 (3)0.0270 (3)0.0347 (4)0.0155 (3)0.0119 (3)0.0222 (3)
O20.0153 (3)0.0180 (3)0.0339 (4)0.0068 (2)0.0065 (3)0.0162 (3)
O30.0178 (3)0.0170 (3)0.0206 (3)0.0095 (2)0.0066 (2)0.0109 (2)
O40.0229 (3)0.0235 (3)0.0338 (4)0.0104 (3)0.0144 (3)0.0198 (3)
O50.0241 (3)0.0382 (4)0.0223 (3)0.0151 (3)0.0135 (3)0.0172 (3)
O60.0189 (3)0.0227 (3)0.0357 (4)0.0082 (3)0.0056 (3)0.0194 (3)
N10.0300 (4)0.0218 (4)0.0196 (4)0.0145 (3)0.0139 (3)0.0120 (3)
C10.0194 (4)0.0179 (4)0.0189 (4)0.0104 (3)0.0084 (3)0.0103 (3)
C20.0146 (3)0.0170 (4)0.0213 (4)0.0081 (3)0.0051 (3)0.0098 (3)
C30.0149 (3)0.0146 (3)0.0176 (4)0.0069 (3)0.0054 (3)0.0073 (3)
C40.0151 (3)0.0144 (3)0.0138 (3)0.0080 (3)0.0058 (3)0.0061 (3)
C50.0136 (3)0.0175 (4)0.0174 (4)0.0079 (3)0.0068 (3)0.0091 (3)
C60.0189 (4)0.0177 (4)0.0178 (4)0.0099 (3)0.0098 (3)0.0097 (3)
C70.0239 (4)0.0213 (4)0.0209 (4)0.0078 (3)0.0067 (3)0.0091 (3)
C80.0207 (4)0.0261 (4)0.0258 (4)0.0119 (3)0.0115 (4)0.0137 (4)
C90.0212 (4)0.0362 (5)0.0194 (4)0.0123 (4)0.0092 (4)0.0096 (4)
C100.0269 (4)0.0327 (5)0.0238 (4)0.0191 (4)0.0145 (4)0.0159 (4)
C110.0194 (4)0.0250 (5)0.0430 (6)0.0080 (4)0.0068 (4)0.0192 (4)
Cl1—C21.7168 (9)C2—C31.3536 (11)
Cl2—C51.7246 (8)C3—C41.5069 (11)
O1—C11.2221 (11)C4—C51.3874 (11)
O2—C31.3148 (10)C5—C61.4107 (11)
O2—H20.825 (19)C7—C81.5161 (13)
O3—C41.2630 (10)C7—H7A0.9900
O4—C61.2349 (11)C7—H7B0.9900
O5—C91.4211 (12)C8—H8A0.9900
O5—C81.4219 (12)C8—H8B0.9900
O6—C111.4260 (12)C9—C101.5148 (13)
O6—H60.740 (17)C9—H9A0.9900
N1—C101.4870 (12)C9—H9B0.9900
N1—C71.4904 (13)C10—H10A0.9900
N1—H1A0.876 (16)C10—H10B0.9900
N1—H1B0.853 (16)C11—H11A0.9800
C1—C21.4373 (12)C11—H11B0.9800
C1—C61.5413 (12)C11—H11C0.9800
C3—O2—H2113.5 (13)C8—C7—H7A110.0
C9—O5—C8109.92 (7)N1—C7—H7B110.0
C11—O6—H6111.7 (13)C8—C7—H7B110.0
C10—N1—C7111.68 (7)H7A—C7—H7B108.4
C10—N1—H1A109.0 (10)O5—C8—C7110.97 (8)
C7—N1—H1A109.8 (10)O5—C8—H8A109.4
C10—N1—H1B108.2 (10)C7—C8—H8A109.4
C7—N1—H1B109.5 (10)O5—C8—H8B109.4
H1A—N1—H1B108.6 (14)C7—C8—H8B109.4
O1—C1—C2123.92 (8)H8A—C8—H8B108.0
O1—C1—C6117.69 (8)O5—C9—C10110.93 (8)
C2—C1—C6118.39 (7)O5—C9—H9A109.5
C3—C2—C1120.81 (8)C10—C9—H9A109.5
C3—C2—Cl1120.88 (7)O5—C9—H9B109.5
C1—C2—Cl1118.31 (6)C10—C9—H9B109.5
O2—C3—C2120.97 (8)H9A—C9—H9B108.0
O2—C3—C4117.02 (7)N1—C10—C9109.27 (8)
C2—C3—C4122.00 (8)N1—C10—H10A109.8
O3—C4—C5125.78 (8)C9—C10—H10A109.8
O3—C4—C3116.12 (7)N1—C10—H10B109.8
C5—C4—C3118.10 (7)C9—C10—H10B109.8
C4—C5—C6123.01 (8)H10A—C10—H10B108.3
C4—C5—Cl2118.77 (6)O6—C11—H11A109.5
C6—C5—Cl2118.20 (6)O6—C11—H11B109.5
O4—C6—C5125.85 (8)H11A—C11—H11B109.5
O4—C6—C1116.53 (8)O6—C11—H11C109.5
C5—C6—C1117.61 (7)H11A—C11—H11C109.5
N1—C7—C8108.60 (8)H11B—C11—H11C109.5
N1—C7—H7A110.0
O1—C1—C2—C3179.84 (9)C3—C4—C5—Cl2176.39 (6)
C6—C1—C2—C3−0.87 (13)C4—C5—C6—O4−177.30 (9)
O1—C1—C2—Cl1−0.89 (13)Cl2—C5—C6—O44.08 (13)
C6—C1—C2—Cl1178.40 (6)C4—C5—C6—C13.11 (12)
C1—C2—C3—O2−179.07 (8)Cl2—C5—C6—C1−175.50 (6)
Cl1—C2—C3—O21.68 (13)O1—C1—C6—O4−1.84 (12)
C1—C2—C3—C41.85 (13)C2—C1—C6—O4178.82 (8)
Cl1—C2—C3—C4−177.40 (6)O1—C1—C6—C5177.79 (8)
O2—C3—C4—O30.18 (11)C2—C1—C6—C5−1.55 (12)
C2—C3—C4—O3179.29 (8)C10—N1—C7—C8−53.98 (10)
O2—C3—C4—C5−179.49 (8)C9—O5—C8—C7−62.82 (10)
C2—C3—C4—C5−0.38 (12)N1—C7—C8—O558.10 (10)
O3—C4—C5—C6178.14 (8)C8—O5—C9—C1062.10 (11)
C3—C4—C5—C6−2.22 (12)C7—N1—C10—C953.70 (11)
O3—C4—C5—Cl2−3.25 (12)O5—C9—C10—N1−57.15 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.878 (18)2.391 (18)3.0069 (12)127.5 (16)
N1—H1A···O3i0.878 (18)2.180 (19)2.9255 (13)142.5 (16)
N1—H1B···O1ii0.852 (19)2.170 (19)2.9207 (14)146.9 (17)
N1—H1B···O4ii0.852 (19)2.233 (19)2.9277 (14)138.7 (16)
O2—H2···O30.82 (2)2.26 (2)2.6605 (12)110.6 (16)
O2—H2···O60.82 (2)1.79 (2)2.5564 (13)153.4 (19)
O6—H6···Cl2i0.742 (19)2.761 (19)3.3342 (9)136.0 (18)
O6—H6···O3i0.742 (19)2.119 (19)2.7812 (12)149 (2)
C8—H8A···O2iii0.992.513.4115 (15)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.878 (18)2.391 (18)3.0069 (12)127.5 (16)
N1—H1A⋯O3i0.878 (18)2.180 (19)2.9255 (13)142.5 (16)
N1—H1B⋯O1ii0.852 (19)2.170 (19)2.9207 (14)146.9 (17)
N1—H1B⋯O4ii0.852 (19)2.233 (19)2.9277 (14)138.7 (16)
O2—H2⋯O30.82 (2)2.26 (2)2.6605 (12)110.6 (16)
O2—H2⋯O60.82 (2)1.79 (2)2.5564 (13)153.4 (19)
O6—H6⋯Cl2i0.742 (19)2.761 (19)3.3342 (9)136.0 (18)
O6—H6⋯O3i0.742 (19)2.119 (19)2.7812 (12)149 (2)
C8—H8A⋯O2iii0.992.513.4115 (15)152

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Correlation between proton transfer and (35)Cl NQR frequency as well as molecular geometry of chloranilic acid in co-crystals with some organic bases.

Authors:  Tetsuo Asaji; Janez Seliger; Veselko Zagar; Hiroyuki Ishida
Journal:  Magn Reson Chem       Date:  2010-07       Impact factor: 2.447

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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