Literature DB >> 22199829

(2E)-1-(2,5-Dimethyl-thio-phen-3-yl)-3-(3-nitro-phen-yl)prop-2-en-1-one.

Abdullah M Asiri, Abdulrahman O Al-Youbi, Salman A Khan, M Nawaz Tahir.   

Abstract

In the title compound, C(15)H(13)NO(3)S, the benzene ring and the five-membered heterocyclic ring are oriented at a dihedral angle of 12.00 (6)°. In the crystal, C-H⋯O inter-actions generate two types of cyclic motifs, R(2) (2)(14) and R(2) (2)(26), connecting the mol-ecules into tapes extending along [101]. In addition, there are π-π stacking inter-actions between the benzene and thio-phene rings with centroid-centroid distances of 3.7263 (14) and 3.7487 (14) Å.

Entities:  

Year:  2011        PMID: 22199829      PMCID: PMC3238980          DOI: 10.1107/S1600536811047933

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of similar compounds, see: Asiri & Khan (2010 ▶, 2011 ▶); Kalirajan et al. (2009 ▶); Patil et al. (2009 ▶); Sarojini et al. (2006 ▶). For related structures and background references, see: Asiri et al. (2010a ▶,b ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H13NO3S M = 287.32 Monoclinic, a = 7.3802 (5) Å b = 13.7973 (9) Å c = 13.4638 (8) Å β = 96.997 (3)° V = 1360.77 (15) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.25 × 0.22 × 0.20 mm

Data collection

Bruker KAPPA APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.945, T max = 0.955 10732 measured reflections 2466 independent reflections 1493 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.117 S = 1.03 2466 reflections 183 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) text, I. DOI: 10.1107/S1600536811047933/gk2432sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047933/gk2432Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047933/gk2432Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13NO3SF(000) = 600
Mr = 287.32Dx = 1.402 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1493 reflections
a = 7.3802 (5) Åθ = 2.1–25.3°
b = 13.7973 (9) ŵ = 0.24 mm1
c = 13.4638 (8) ÅT = 296 K
β = 96.997 (3)°Prism, yellow
V = 1360.77 (15) Å30.25 × 0.22 × 0.20 mm
Z = 4
Bruker KAPPA APEXII CCD diffractometer2466 independent reflections
Radiation source: fine-focus sealed tube1493 reflections with I > 2σ(I)
graphiteRint = 0.051
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.1°
ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −13→16
Tmin = 0.945, Tmax = 0.955l = −16→16
10732 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0498P)2 + 0.0228P] where P = (Fo2 + 2Fc2)/3
2466 reflections(Δ/σ)max < 0.001
183 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.21173 (10)0.46796 (5)0.18440 (5)0.0520 (3)
O10.4422 (3)−0.10573 (18)0.51656 (15)0.0876 (10)
O20.5017 (3)−0.25617 (17)0.49723 (15)0.0892 (10)
O30.0404 (3)0.17111 (14)0.06130 (14)0.0744 (8)
N10.4392 (3)−0.1786 (2)0.46575 (18)0.0607 (10)
C10.2331 (3)−0.07879 (19)0.22025 (18)0.0413 (9)
C20.3105 (3)−0.08450 (19)0.32014 (17)0.0431 (9)
C30.3587 (3)−0.17332 (19)0.36030 (18)0.0444 (9)
C40.3343 (4)−0.2574 (2)0.3066 (2)0.0577 (11)
C50.2586 (4)−0.2528 (2)0.2088 (2)0.0618 (11)
C60.2074 (4)−0.1642 (2)0.1663 (2)0.0530 (10)
C70.1775 (3)0.01281 (19)0.17143 (19)0.0457 (10)
C80.2028 (4)0.10257 (19)0.20395 (18)0.0490 (10)
C90.1319 (4)0.1860 (2)0.14180 (18)0.0491 (10)
C100.1748 (3)0.28475 (18)0.17826 (18)0.0419 (9)
C110.1514 (3)0.36459 (18)0.11758 (18)0.0438 (9)
C120.0882 (4)0.3718 (2)0.00750 (18)0.0616 (11)
C130.2414 (3)0.31061 (19)0.27906 (17)0.0439 (9)
C140.2659 (3)0.40587 (19)0.29503 (17)0.0433 (9)
C150.3299 (4)0.4582 (2)0.39024 (19)0.0597 (11)
H20.32910−0.028700.358790.0517*
H40.36845−0.316700.336080.0691*
H50.24165−0.309110.170940.0742*
H60.15459−0.161880.100040.0636*
H70.114640.006980.107530.0548*
H80.266070.113620.266960.0588*
H12A−0.042830.37068−0.003220.0925*
H12B0.135380.31800−0.026580.0925*
H12C0.131520.43128−0.018060.0925*
H130.265680.264830.329620.0527*
H15A0.452010.481320.388080.0894*
H15B0.328000.414790.445810.0894*
H15C0.250520.512150.397900.0894*
U11U22U33U12U13U23
S10.0670 (5)0.0373 (4)0.0511 (4)0.0052 (4)0.0043 (3)0.0067 (3)
O10.132 (2)0.0787 (18)0.0482 (13)0.0074 (15)−0.0048 (13)−0.0029 (13)
O20.120 (2)0.0730 (16)0.0699 (16)0.0207 (15)−0.0078 (14)0.0294 (13)
O30.1077 (17)0.0512 (13)0.0544 (12)−0.0006 (12)−0.0302 (12)0.0031 (10)
N10.0710 (17)0.0627 (19)0.0483 (16)0.0049 (15)0.0073 (12)0.0161 (15)
C10.0439 (16)0.0344 (15)0.0453 (15)−0.0035 (13)0.0037 (12)0.0001 (13)
C20.0515 (17)0.0361 (16)0.0420 (15)0.0013 (13)0.0067 (12)−0.0021 (13)
C30.0471 (17)0.0411 (17)0.0445 (15)−0.0004 (14)0.0036 (12)0.0072 (14)
C40.067 (2)0.0354 (17)0.069 (2)0.0034 (15)0.0018 (16)0.0096 (16)
C50.079 (2)0.0352 (17)0.068 (2)−0.0013 (16)−0.0044 (17)−0.0073 (15)
C60.0605 (19)0.0453 (18)0.0500 (16)−0.0025 (15)−0.0066 (14)−0.0031 (15)
C70.0500 (17)0.0423 (18)0.0429 (16)−0.0023 (14)−0.0016 (12)0.0036 (13)
C80.0639 (19)0.0420 (18)0.0384 (15)0.0004 (14)−0.0047 (13)0.0029 (13)
C90.0582 (18)0.0476 (18)0.0396 (15)0.0023 (14)−0.0015 (14)0.0062 (14)
C100.0518 (17)0.0342 (16)0.0382 (14)0.0054 (12)−0.0003 (12)0.0064 (12)
C110.0500 (17)0.0415 (16)0.0396 (14)0.0085 (13)0.0038 (12)0.0040 (13)
C120.084 (2)0.0536 (19)0.0449 (16)0.0124 (16)−0.0011 (15)0.0121 (14)
C130.0527 (17)0.0402 (17)0.0376 (15)0.0000 (13)0.0006 (12)0.0106 (12)
C140.0451 (16)0.0408 (17)0.0432 (15)0.0011 (13)0.0023 (12)0.0023 (13)
C150.073 (2)0.0519 (19)0.0524 (17)−0.0011 (16)0.0008 (15)−0.0062 (14)
S1—C111.716 (3)C10—C131.431 (3)
S1—C141.723 (2)C11—C121.502 (3)
O1—N11.215 (4)C13—C141.341 (4)
O2—N11.221 (4)C14—C151.497 (4)
O3—C91.223 (3)C2—H20.9300
N1—C31.473 (3)C4—H40.9300
C1—C21.398 (3)C5—H50.9300
C1—C61.385 (4)C6—H60.9300
C1—C71.460 (4)C7—H70.9300
C2—C31.369 (4)C8—H80.9300
C3—C41.367 (4)C12—H12A0.9600
C4—C51.368 (4)C12—H12B0.9600
C5—C61.383 (4)C12—H12C0.9600
C7—C81.319 (4)C13—H130.9300
C8—C91.481 (4)C15—H15A0.9600
C9—C101.470 (4)C15—H15B0.9600
C10—C111.370 (3)C15—H15C0.9600
C11—S1—C1493.33 (12)C13—C14—C15129.3 (2)
O1—N1—O2123.4 (2)C1—C2—H2120.00
O1—N1—C3118.7 (2)C3—C2—H2120.00
O2—N1—C3118.0 (2)C3—C4—H4121.00
C2—C1—C6118.1 (2)C5—C4—H4121.00
C2—C1—C7122.8 (2)C4—C5—H5120.00
C6—C1—C7119.2 (2)C6—C5—H5120.00
C1—C2—C3119.1 (2)C1—C6—H6119.00
N1—C3—C2118.7 (2)C5—C6—H6119.00
N1—C3—C4118.7 (2)C1—C7—H7115.00
C2—C3—C4122.7 (2)C8—C7—H7115.00
C3—C4—C5118.8 (3)C7—C8—H8119.00
C4—C5—C6119.9 (3)C9—C8—H8119.00
C1—C6—C5121.5 (2)C11—C12—H12A109.00
C1—C7—C8130.0 (2)C11—C12—H12B109.00
C7—C8—C9121.1 (2)C11—C12—H12C109.00
O3—C9—C8119.3 (2)H12A—C12—H12B109.00
O3—C9—C10121.7 (2)H12A—C12—H12C109.00
C8—C9—C10119.0 (2)H12B—C12—H12C109.00
C9—C10—C11122.7 (2)C10—C13—H13123.00
C9—C10—C13125.7 (2)C14—C13—H13123.00
C11—C10—C13111.7 (2)C14—C15—H15A110.00
S1—C11—C10110.48 (18)C14—C15—H15B109.00
S1—C11—C12119.47 (19)C14—C15—H15C109.00
C10—C11—C12130.0 (2)H15A—C15—H15B110.00
C10—C13—C14114.9 (2)H15A—C15—H15C109.00
S1—C14—C13109.66 (18)H15B—C15—H15C109.00
S1—C14—C15121.10 (19)
C14—S1—C11—C10−0.85 (19)C3—C4—C5—C6−0.4 (4)
C14—S1—C11—C12−179.6 (2)C4—C5—C6—C10.9 (4)
C11—S1—C14—C131.22 (19)C1—C7—C8—C9−179.2 (2)
C11—S1—C14—C15−178.9 (2)C7—C8—C9—O33.8 (4)
O1—N1—C3—C27.8 (3)C7—C8—C9—C10−175.7 (2)
O1—N1—C3—C4−171.9 (2)O3—C9—C10—C11−14.6 (4)
O2—N1—C3—C2−171.3 (2)O3—C9—C10—C13164.2 (3)
O2—N1—C3—C49.0 (3)C8—C9—C10—C11164.9 (2)
C6—C1—C2—C30.5 (3)C8—C9—C10—C13−16.3 (4)
C7—C1—C2—C3179.9 (2)C9—C10—C11—S1179.2 (2)
C2—C1—C6—C5−0.9 (4)C9—C10—C11—C12−2.3 (4)
C7—C1—C6—C5179.6 (2)C13—C10—C11—S10.3 (2)
C2—C1—C7—C87.4 (4)C13—C10—C11—C12178.8 (2)
C6—C1—C7—C8−173.2 (3)C9—C10—C13—C14−178.2 (2)
C1—C2—C3—N1−179.7 (2)C11—C10—C13—C140.7 (3)
C1—C2—C3—C40.0 (4)C10—C13—C14—S1−1.3 (3)
N1—C3—C4—C5179.6 (2)C10—C13—C14—C15178.9 (2)
C2—C3—C4—C50.0 (4)
D—H···AD—HH···AD···AD—H···A
C6—H6···O3i0.932.463.373 (3)168
C15—H15B···O2ii0.962.593.339 (4)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O3i0.932.463.373 (3)168
C15—H15B⋯O2ii0.962.593.339 (4)135

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2E)-3-[4-(Dimethyl-amino)-phen-yl]-1-(2,5-dimethyl-3-thien-yl)prop-2-en-1-one.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

3.  (2E)-1-(2,5-Dimethyl-3-thien-yl)-3-(2-meth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21

4.  Synthesis and anti-bacterial activities of a bis-chalcone derived from thiophene and its bis-cyclized products.

Authors:  Abdullah M Asiri; Salman A Khan
Journal:  Molecules       Date:  2011-01-12       Impact factor: 4.411

5.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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