Literature DB >> 22199817

3-Oxo-5-(piperidin-1-yl)-2,3-dihydro-1H-pyrazole-4-carbonitrile.

Wedad M Al-Adiwish, W A Yaacob, D Adan, Mohamed Ibrahim Mohamed Tahir, Mohammad B Kassim.   

Abstract

In the title compound, C(9)H(12)N(4)O, the piperidine ring adopts a chair conformation and makes a dihedral angle of 42.49 (11)° with the approximately planar pyrazole moiety [maximum deviation = 0.038 (2) Å]. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds and a weak C-H⋯O inter-action link the mol-ecules into sheets lying parallel to (110).

Entities:  

Year:  2011        PMID: 22199817      PMCID: PMC3238968          DOI: 10.1107/S1600536811047714

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological background, see: Patel et al. (1990 ▶); Morimoto et al. (1990 ▶). For related structures see: Zaharan et al. (2001 ▶); Elgemeie et al. (2007 ▶); Gouda et al. (2010 ▶); Shelton et al. (2011 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C9H12N4O M = 192.23 Triclinic, a = 7.2667 (5) Å b = 7.9624 (5) Å c = 8.8306 (8) Å α = 89.280 (6)° β = 75.934 (7)° γ = 71.906 (6)° V = 470.01 (6) Å3 Z = 2 Cu Kα radiation μ = 0.77 mm−1 T = 150 K 0.22 × 0.19 × 0.13 mm

Data collection

Oxford Diffraction Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.849, T max = 0.906 5083 measured reflections 1803 independent reflections 1627 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.166 S = 1.11 1803 reflections 127 parameters H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.61 e Å−3 Data collection: Gemini User Manual (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2002 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811047714/hb6450sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047714/hb6450Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047714/hb6450Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H12N4OZ = 2
Mr = 192.23F(000) = 204
Triclinic, P1Dx = 1.358 Mg m3
Hall symbol: -P 1Melting point: 527 K
a = 7.2667 (5) ÅCu Kα radiation, λ = 1.54178 Å
b = 7.9624 (5) ÅCell parameters from 3129 reflections
c = 8.8306 (8) Åθ = 5–71°
α = 89.280 (6)°µ = 0.77 mm1
β = 75.934 (7)°T = 150 K
γ = 71.906 (6)°Block, colourless
V = 470.01 (6) Å30.22 × 0.19 × 0.13 mm
Oxford Diffraction Gemini diffractometer1803 independent reflections
Radiation source: fine-focus sealed tube1627 reflections with I > 2σ(I)
graphiteRint = 0.013
ω/2θ scansθmax = 70.9°, θmin = 5.2°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)h = −8→8
Tmin = 0.849, Tmax = 0.906k = −9→9
5083 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.166H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0971P)2 + 0.2641P] where P = (Fo2 + 2Fc2)/3
1803 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.74 e Å3
0 restraintsΔρmin = −0.61 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1 K.Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst. 105 107.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.2334 (2)0.03312 (18)0.39572 (17)0.0334 (4)
N10.8756 (2)0.6211 (2)0.2901 (2)0.0306 (4)
N20.8011 (2)0.3667 (2)0.38329 (19)0.0273 (4)
H20.67300.41300.40700.033*
N30.9078 (2)0.1884 (2)0.39566 (19)0.0285 (4)
H30.85630.10430.41460.034*
N41.4774 (3)0.3703 (3)0.2487 (2)0.0397 (5)
C11.0124 (3)0.7167 (3)0.2139 (3)0.0349 (5)
H1A1.14960.64180.20140.042*
H1B0.99070.82180.27890.042*
C20.9771 (4)0.7692 (3)0.0547 (3)0.0394 (5)
H2A1.01650.6635−0.01440.047*
H2B1.05960.84130.00940.047*
C30.7585 (4)0.8722 (3)0.0673 (3)0.0424 (6)
H3A0.72340.98510.12530.051*
H3B0.73860.8954−0.03660.051*
C40.6237 (3)0.7685 (3)0.1497 (3)0.0380 (5)
H4A0.48470.83900.16280.046*
H4B0.64910.66100.08650.046*
C50.6632 (3)0.7218 (3)0.3084 (2)0.0333 (5)
H5A0.62820.82930.37420.040*
H5B0.58080.65170.35880.040*
C60.9374 (3)0.4540 (2)0.3267 (2)0.0249 (4)
C71.1293 (3)0.3363 (2)0.3210 (2)0.0252 (4)
C81.1054 (3)0.1702 (2)0.3729 (2)0.0262 (4)
C91.3185 (3)0.3601 (3)0.2816 (2)0.0289 (5)
U11U22U33U12U13U23
O10.0258 (7)0.0273 (7)0.0420 (8)−0.0030 (6)−0.0067 (6)0.0098 (6)
N10.0276 (9)0.0285 (9)0.0356 (9)−0.0062 (7)−0.0116 (7)0.0092 (7)
N20.0200 (8)0.0254 (8)0.0343 (9)−0.0032 (6)−0.0082 (6)0.0071 (6)
N30.0254 (8)0.0232 (8)0.0371 (9)−0.0070 (7)−0.0092 (7)0.0072 (6)
N40.0283 (10)0.0412 (11)0.0545 (11)−0.0131 (8)−0.0169 (8)0.0118 (8)
C10.0353 (11)0.0276 (10)0.0462 (12)−0.0126 (9)−0.0152 (9)0.0095 (9)
C20.0445 (13)0.0297 (11)0.0387 (12)−0.0095 (9)−0.0038 (9)0.0084 (9)
C30.0532 (14)0.0321 (11)0.0331 (11)−0.0007 (10)−0.0116 (10)0.0076 (9)
C40.0364 (11)0.0332 (11)0.0388 (11)0.0013 (9)−0.0154 (9)0.0018 (9)
C50.0295 (11)0.0274 (10)0.0382 (11)−0.0016 (8)−0.0093 (8)0.0061 (8)
C60.0271 (10)0.0274 (10)0.0215 (8)−0.0078 (8)−0.0095 (7)0.0035 (7)
C70.0244 (9)0.0259 (10)0.0257 (9)−0.0066 (7)−0.0090 (7)0.0029 (7)
C80.0255 (9)0.0261 (9)0.0252 (9)−0.0050 (7)−0.0071 (7)0.0016 (7)
C90.0298 (11)0.0269 (10)0.0318 (10)−0.0070 (8)−0.0141 (8)0.0065 (8)
O1—C81.246 (2)C2—H2A0.9700
N1—C61.329 (3)C2—H2B0.9700
N1—C11.467 (3)C3—C41.520 (3)
N1—C51.471 (3)C3—H3A0.9700
N2—C61.376 (2)C3—H3B0.9700
N2—N31.408 (2)C4—C51.517 (3)
N2—H20.8600C4—H4A0.9700
N3—C81.362 (3)C4—H4B0.9700
N3—H30.8600C5—H5A0.9700
N4—C91.148 (3)C5—H5B0.9700
C1—C21.520 (3)C6—C71.407 (3)
C1—H1A0.9700C7—C91.406 (3)
C1—H1B0.9700C7—C81.442 (3)
C2—C31.521 (3)
C6—N1—C1123.24 (17)C2—C3—H3B109.5
C6—N1—C5122.91 (17)H3A—C3—H3B108.1
C1—N1—C5113.60 (16)C5—C4—C3109.84 (19)
C6—N2—N3108.06 (14)C5—C4—H4A109.7
C6—N2—H2126.0C3—C4—H4A109.7
N3—N2—H2126.0C5—C4—H4B109.7
C8—N3—N2109.28 (15)C3—C4—H4B109.7
C8—N3—H3125.4H4A—C4—H4B108.2
N2—N3—H3125.4N1—C5—C4110.09 (17)
N1—C1—C2109.99 (17)N1—C5—H5A109.6
N1—C1—H1A109.7C4—C5—H5A109.6
C2—C1—H1A109.7N1—C5—H5B109.6
N1—C1—H1B109.7C4—C5—H5B109.6
C2—C1—H1B109.7H5A—C5—H5B108.2
H1A—C1—H1B108.2N1—C6—N2120.17 (17)
C1—C2—C3111.40 (19)N1—C6—C7132.01 (18)
C1—C2—H2A109.3N2—C6—C7107.82 (16)
C3—C2—H2A109.3C9—C7—C6131.41 (17)
C1—C2—H2B109.3C9—C7—C8121.20 (17)
C3—C2—H2B109.3C6—C7—C8107.35 (16)
H2A—C2—H2B108.0O1—C8—N3124.15 (18)
C4—C3—C2110.68 (18)O1—C8—C7129.26 (18)
C4—C3—H3A109.5N3—C8—C7106.58 (16)
C2—C3—H3A109.5N4—C9—C7176.5 (2)
C4—C3—H3B109.5
D—H···AD—HH···AD···AD—H···A
N2—H2···N4i0.862.322.875 (3)123
N3—H3···O1ii0.862.072.772 (2)138
C4—H4A···O1iii0.972.543.258 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N4i0.862.322.875 (3)123
N3—H3⋯O1ii0.862.072.772 (2)138
C4—H4A⋯O1iii0.972.543.258 (3)131

Symmetry codes: (i) ; (ii) ; (iii) .

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