Literature DB >> 22199785

4-(2,4-Dichloro-phen-yl)-5,5-dimethyl-2-(3-silatranyl-propyl-mino)-1,3,2-dioxa-phospho-rinane 2-oxide.

Zhe-Rong Liu1, Xiao-Jing Tan, De-Jian Wang, Yan Wang.   

Abstract

In the title compound, C(20)H(31)Cl(2)N(2)O(6)PSi, the dioxaphospho-rinane ring adopts a cis conformation. The silatrane fragment forms a cage-like structure in which there exists an intra-molecular Si-N donor-acceptor bond. In the crystal, centrosymmetrically related mol-ecules are linked by pairs of N-H⋯O hydrogen bonds into inversion dimers, generating rings with graph-set motif R(2) (2)(8). The dimers are further connected into ribbons parallel to the a axis by inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22199785      PMCID: PMC3238936          DOI: 10.1107/S1600536811044928

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1,3,2-dioxaphospho­rinane compounds, see: Shi et al. (2006 ▶); Sun et al. (2006 ▶) and of γ-amino­propyl­silatrane, see: Puri et al. (2011 ▶). For the synthesis of the title compound, see: Wan et al. (2005 ▶).

Experimental

Crystal data

C20H31Cl2N2O6PSi M = 525.43 Triclinic, a = 10.7738 (12) Å b = 10.9320 (13) Å c = 11.2807 (13) Å α = 111.135 (2)° β = 95.926 (2)° γ = 90.424 (2)° V = 1231.2 (2) Å3 Z = 2 Mo Kα radiation μ = 0.42 mm−1 T = 298 K 0.20 × 0.15 × 0.08 mm

Data collection

Bruker SMART CCD area-detector diffractometer 6745 measured reflections 4720 independent reflections 2997 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.194 S = 1.00 4720 reflections 291 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044928/rz2656sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044928/rz2656Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H31Cl2N2O6PSiZ = 2
Mr = 525.43F(000) = 552
Triclinic, P1Dx = 1.417 Mg m3Dm = 1.417 Mg m3Dm measured by not measured
Hall symbol: -P 1Melting point = 522–523 K
a = 10.7738 (12) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.9320 (13) ÅCell parameters from 1174 reflections
c = 11.2807 (13) Åθ = 2.2–19.3°
α = 111.135 (2)°µ = 0.42 mm1
β = 95.926 (2)°T = 298 K
γ = 90.424 (2)°Needle, colorless
V = 1231.2 (2) Å30.20 × 0.15 × 0.08 mm
Bruker SMART CCD area-detector diffractometer2997 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
graphiteθmax = 26.0°, θmin = 1.9°
φ and ω scansh = −13→6
6745 measured reflectionsk = −13→13
4720 independent reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.194H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0969P)2] where P = (Fo2 + 2Fc2)/3
4720 reflections(Δ/σ)max < 0.001
291 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0122 (4)0.6821 (4)0.7954 (4)0.0437 (11)
C20.9035 (4)0.7254 (4)0.8460 (4)0.0358 (9)
C30.8260 (4)0.7889 (4)0.7813 (4)0.0438 (11)
H30.75040.81840.81140.053*
C40.8579 (4)0.8088 (4)0.6755 (4)0.0457 (11)
H40.80370.84990.63370.055*
C50.9678 (5)0.7691 (5)0.6316 (4)0.0514 (12)
C61.0482 (4)0.7019 (5)0.6884 (4)0.0501 (12)
H61.12280.67150.65630.060*
C70.8618 (4)0.7051 (4)0.9614 (4)0.0379 (10)
H70.89790.62550.96800.045*
C80.8945 (4)0.8210 (4)1.0912 (4)0.0425 (10)
C90.8522 (4)0.9521 (4)1.0853 (5)0.0531 (12)
H9A0.76470.94431.05540.080*
H9B0.89860.97531.02770.080*
H9C0.86661.01901.16900.080*
C101.0350 (4)0.8302 (5)1.1341 (5)0.0645 (15)
H10A1.08000.84931.07310.097*
H10B1.06010.74811.13950.097*
H10C1.05300.89881.21640.097*
C110.8290 (5)0.7924 (5)1.1928 (4)0.0567 (13)
H11A0.85970.71241.20110.068*
H11B0.84990.86341.27450.068*
C120.4695 (4)0.7914 (4)0.9460 (4)0.0436 (10)
H12A0.53210.86330.97870.052*
H12B0.39100.82500.97630.052*
C130.4549 (4)0.7405 (4)0.8012 (4)0.0423 (10)
H13A0.38940.67140.76990.051*
H13B0.53200.70140.77200.051*
C140.4239 (4)0.8422 (4)0.7415 (4)0.0454 (11)
H14A0.48790.91260.77440.054*
H14B0.34530.87930.76800.054*
C150.6068 (5)0.6880 (5)0.4263 (5)0.0603 (13)
H15A0.67070.62630.42770.072*
H15B0.64430.75970.40880.072*
C160.5014 (5)0.6206 (5)0.3235 (4)0.0556 (13)
H16A0.52330.61400.24020.067*
H16B0.48300.53300.32180.067*
C170.3320 (5)0.9231 (4)0.4212 (4)0.0544 (13)
H17A0.35511.00930.42190.065*
H17B0.24200.90930.40150.065*
C180.3951 (5)0.8196 (5)0.3220 (4)0.0540 (12)
H18A0.35080.80100.23760.065*
H18B0.48050.84840.32190.065*
C190.2604 (5)0.5652 (5)0.4171 (4)0.0592 (13)
H19A0.17370.53940.41540.071*
H19B0.30900.48750.39890.071*
C200.2724 (5)0.6263 (5)0.3168 (4)0.0561 (13)
H20A0.27210.55890.23260.067*
H20B0.20420.68320.31480.067*
Cl11.11497 (12)0.59273 (13)0.86003 (13)0.0648 (4)
Cl21.01035 (15)0.8000 (2)0.50014 (16)0.1002 (7)
N10.5068 (3)0.6877 (3)0.9955 (3)0.0420 (9)
H10.44810.63881.00410.050*
N20.3930 (3)0.7025 (3)0.3565 (3)0.0455 (9)
O10.7265 (2)0.6839 (3)0.9344 (3)0.0386 (7)
O20.6939 (3)0.7780 (3)1.1629 (3)0.0526 (8)
O30.6623 (3)0.5297 (3)1.0444 (3)0.0529 (8)
O40.5583 (3)0.7371 (3)0.5471 (3)0.0515 (8)
O50.3694 (3)0.9157 (3)0.5428 (3)0.0493 (8)
O60.3041 (3)0.6576 (3)0.5381 (3)0.0481 (8)
P10.64665 (11)0.65882 (11)1.03461 (10)0.0383 (3)
Si10.41111 (11)0.77709 (11)0.56192 (11)0.0373 (3)
U11U22U33U12U13U23
C10.036 (3)0.049 (3)0.051 (3)−0.001 (2)0.000 (2)0.027 (2)
C20.028 (2)0.036 (2)0.048 (2)0.0010 (18)0.0038 (18)0.0212 (19)
C30.033 (2)0.050 (3)0.055 (3)0.000 (2)0.001 (2)0.028 (2)
C40.037 (3)0.059 (3)0.047 (3)0.000 (2)−0.001 (2)0.027 (2)
C50.047 (3)0.067 (3)0.050 (3)−0.003 (2)0.005 (2)0.033 (2)
C60.038 (3)0.060 (3)0.057 (3)0.001 (2)0.009 (2)0.027 (2)
C70.034 (2)0.038 (2)0.047 (2)−0.0011 (18)0.0017 (19)0.023 (2)
C80.036 (3)0.047 (3)0.045 (3)−0.008 (2)−0.0044 (19)0.021 (2)
C90.053 (3)0.044 (3)0.058 (3)−0.010 (2)0.003 (2)0.015 (2)
C100.049 (3)0.070 (4)0.067 (3)−0.012 (3)−0.016 (3)0.021 (3)
C110.059 (3)0.065 (3)0.041 (3)−0.019 (3)−0.010 (2)0.018 (2)
C120.045 (3)0.043 (2)0.046 (3)0.007 (2)0.011 (2)0.018 (2)
C130.048 (3)0.036 (2)0.041 (2)0.002 (2)0.005 (2)0.0121 (19)
C140.052 (3)0.041 (2)0.045 (3)0.009 (2)0.006 (2)0.017 (2)
C150.051 (3)0.067 (3)0.066 (3)0.018 (3)0.022 (3)0.024 (3)
C160.067 (4)0.054 (3)0.047 (3)0.015 (3)0.028 (2)0.013 (2)
C170.062 (3)0.047 (3)0.060 (3)0.002 (2)−0.007 (2)0.029 (2)
C180.066 (3)0.053 (3)0.046 (3)0.001 (2)0.005 (2)0.023 (2)
C190.068 (4)0.052 (3)0.051 (3)−0.016 (3)0.007 (3)0.012 (2)
C200.067 (4)0.053 (3)0.041 (3)−0.009 (2)0.003 (2)0.009 (2)
Cl10.0502 (8)0.0797 (9)0.0828 (10)0.0257 (7)0.0131 (7)0.0496 (8)
Cl20.0808 (12)0.1756 (19)0.0855 (11)0.0259 (11)0.0294 (9)0.0912 (13)
N10.041 (2)0.051 (2)0.045 (2)−0.0031 (17)0.0070 (16)0.0286 (18)
N20.054 (3)0.041 (2)0.043 (2)0.0000 (18)0.0076 (18)0.0159 (17)
O10.0308 (16)0.0466 (17)0.0395 (16)−0.0060 (13)0.0009 (12)0.0180 (13)
O20.052 (2)0.066 (2)0.0388 (17)−0.0108 (16)0.0013 (15)0.0198 (16)
O30.0414 (19)0.0554 (19)0.072 (2)−0.0042 (15)−0.0008 (15)0.0372 (17)
O40.0430 (19)0.068 (2)0.0493 (19)0.0093 (16)0.0092 (15)0.0270 (16)
O50.068 (2)0.0364 (16)0.0422 (17)0.0120 (15)0.0025 (15)0.0140 (14)
O60.054 (2)0.0482 (18)0.0408 (17)−0.0099 (15)0.0080 (14)0.0145 (14)
P10.0384 (7)0.0428 (7)0.0382 (6)−0.0051 (5)0.0029 (5)0.0204 (5)
Si10.0385 (7)0.0367 (7)0.0372 (6)0.0038 (5)0.0048 (5)0.0140 (5)
C1—C21.368 (6)C14—Si11.879 (4)
C1—C61.392 (6)C14—H14A0.9700
C1—Cl11.754 (4)C14—H14B0.9700
C2—C31.400 (5)C15—O41.429 (5)
C2—C71.508 (5)C15—C161.509 (7)
C3—C41.365 (6)C15—H15A0.9700
C3—H30.9300C15—H15B0.9700
C4—C51.345 (6)C16—N21.472 (6)
C4—H40.9300C16—H16A0.9700
C5—C61.390 (6)C16—H16B0.9700
C5—Cl21.739 (5)C17—O51.420 (5)
C6—H60.9300C17—C181.501 (7)
C7—O11.458 (5)C17—H17A0.9700
C7—C81.557 (6)C17—H17B0.9700
C7—H70.9800C18—N21.467 (5)
C8—C111.527 (6)C18—H18A0.9700
C8—C91.529 (6)C18—H18B0.9700
C8—C101.532 (6)C19—O61.405 (5)
C9—H9A0.9600C19—C201.522 (6)
C9—H9B0.9600C19—H19A0.9700
C9—H9C0.9600C19—H19B0.9700
C10—H10A0.9600C20—N21.475 (6)
C10—H10B0.9600C20—H20A0.9700
C10—H10C0.9600C20—H20B0.9700
C11—O21.454 (5)N1—P11.592 (3)
C11—H11A0.9700N1—H10.8600
C11—H11B0.9700N2—Si12.148 (4)
C12—N11.474 (5)O1—P11.585 (3)
C12—C131.514 (5)O2—P11.590 (3)
C12—H12A0.9700O3—P11.465 (3)
C12—H12B0.9700O4—Si11.657 (3)
C13—C141.517 (5)O5—Si11.665 (3)
C13—H13A0.9700O6—Si11.664 (3)
C13—H13B0.9700
C2—C1—C6123.3 (4)O4—C15—C16108.8 (4)
C2—C1—Cl1121.6 (3)O4—C15—H15A109.9
C6—C1—Cl1115.1 (3)C16—C15—H15A109.9
C1—C2—C3116.1 (4)O4—C15—H15B109.9
C1—C2—C7124.6 (4)C16—C15—H15B109.9
C3—C2—C7119.3 (4)H15A—C15—H15B108.3
C4—C3—C2122.1 (4)N2—C16—C15106.1 (4)
C4—C3—H3119.0N2—C16—H16A110.5
C2—C3—H3119.0C15—C16—H16A110.5
C5—C4—C3120.0 (4)N2—C16—H16B110.5
C5—C4—H4120.0C15—C16—H16B110.5
C3—C4—H4120.0H16A—C16—H16B108.7
C4—C5—C6121.3 (4)O5—C17—C18108.9 (4)
C4—C5—Cl2119.7 (4)O5—C17—H17A109.9
C6—C5—Cl2118.9 (4)C18—C17—H17A109.9
C5—C6—C1117.2 (4)O5—C17—H17B109.9
C5—C6—H6121.4C18—C17—H17B109.9
C1—C6—H6121.4H17A—C17—H17B108.3
O1—C7—C2105.1 (3)N2—C18—C17106.2 (4)
O1—C7—C8109.2 (3)N2—C18—H18A110.5
C2—C7—C8115.6 (3)C17—C18—H18A110.5
O1—C7—H7108.9N2—C18—H18B110.5
C2—C7—H7108.9C17—C18—H18B110.5
C8—C7—H7108.9H18A—C18—H18B108.7
C11—C8—C9108.6 (4)O6—C19—C20108.9 (4)
C11—C8—C10106.7 (4)O6—C19—H19A109.9
C9—C8—C10110.2 (4)C20—C19—H19A109.9
C11—C8—C7108.3 (3)O6—C19—H19B109.9
C9—C8—C7112.3 (3)C20—C19—H19B109.9
C10—C8—C7110.5 (4)H19A—C19—H19B108.3
C8—C9—H9A109.5N2—C20—C19105.2 (4)
C8—C9—H9B109.5N2—C20—H20A110.7
H9A—C9—H9B109.5C19—C20—H20A110.7
C8—C9—H9C109.5N2—C20—H20B110.7
H9A—C9—H9C109.5C19—C20—H20B110.7
H9B—C9—H9C109.5H20A—C20—H20B108.8
C8—C10—H10A109.5C12—N1—P1125.4 (3)
C8—C10—H10B109.5C12—N1—H1117.3
H10A—C10—H10B109.5P1—N1—H1117.3
C8—C10—H10C109.5C18—N2—C16114.4 (4)
H10A—C10—H10C109.5C18—N2—C20113.7 (4)
H10B—C10—H10C109.5C16—N2—C20113.3 (4)
O2—C11—C8112.8 (3)C18—N2—Si1104.9 (3)
O2—C11—H11A109.0C16—N2—Si1104.3 (3)
C8—C11—H11A109.0C20—N2—Si1104.9 (3)
O2—C11—H11B109.0C7—O1—P1120.6 (2)
C8—C11—H11B109.0C11—O2—P1114.1 (3)
H11A—C11—H11B107.8C15—O4—Si1122.9 (3)
N1—C12—C13111.7 (3)C17—O5—Si1123.0 (3)
N1—C12—H12A109.3C19—O6—Si1123.8 (3)
C13—C12—H12A109.3O3—P1—O1113.75 (18)
N1—C12—H12B109.3O3—P1—O2113.69 (17)
C13—C12—H12B109.3O1—P1—O2102.17 (16)
H12A—C12—H12B107.9O3—P1—N1114.75 (18)
C12—C13—C14115.4 (3)O1—P1—N1105.51 (16)
C12—C13—H13A108.4O2—P1—N1105.78 (18)
C14—C13—H13A108.4O4—Si1—O6118.09 (17)
C12—C13—H13B108.4O4—Si1—O5117.49 (17)
C14—C13—H13B108.4O6—Si1—O5120.06 (17)
H13A—C13—H13B107.5O4—Si1—C1497.52 (18)
C13—C14—Si1114.4 (3)O6—Si1—C1496.54 (18)
C13—C14—H14A108.7O5—Si1—C1496.87 (16)
Si1—C14—H14A108.7O4—Si1—N283.46 (15)
C13—C14—H14B108.7O6—Si1—N282.74 (14)
Si1—C14—H14B108.7O5—Si1—N282.90 (14)
H14A—C14—H14B107.6C14—Si1—N2178.98 (19)
C6—C1—C2—C31.9 (6)C19—C20—N2—Si1−34.7 (4)
Cl1—C1—C2—C3−176.4 (3)C2—C7—O1—P1−179.8 (2)
C6—C1—C2—C7179.8 (4)C8—C7—O1—P1−55.2 (4)
Cl1—C1—C2—C71.5 (6)C8—C11—O2—P162.2 (5)
C1—C2—C3—C4−1.2 (6)C16—C15—O4—Si1−26.8 (5)
C7—C2—C3—C4−179.2 (4)C18—C17—O5—Si1−28.5 (5)
C2—C3—C4—C5−1.2 (7)C20—C19—O6—Si1−27.5 (5)
C3—C4—C5—C63.1 (7)C7—O1—P1—O3−71.7 (3)
C3—C4—C5—Cl2−177.7 (4)C7—O1—P1—O251.2 (3)
C4—C5—C6—C1−2.4 (7)C7—O1—P1—N1161.7 (3)
Cl2—C5—C6—C1178.4 (4)C11—O2—P1—O371.4 (3)
C2—C1—C6—C5−0.2 (7)C11—O2—P1—O1−51.6 (3)
Cl1—C1—C6—C5178.2 (3)C11—O2—P1—N1−161.7 (3)
C1—C2—C7—O1−143.9 (4)C12—N1—P1—O3−162.7 (3)
C3—C2—C7—O133.9 (5)C12—N1—P1—O1−36.6 (4)
C1—C2—C7—C895.6 (5)C12—N1—P1—O271.2 (4)
C3—C2—C7—C8−86.5 (5)C15—O4—Si1—O682.5 (4)
O1—C7—C8—C1153.4 (4)C15—O4—Si1—O5−74.1 (4)
C2—C7—C8—C11171.6 (4)C15—O4—Si1—C14−175.9 (4)
O1—C7—C8—C9−66.6 (4)C15—O4—Si1—N24.3 (4)
C2—C7—C8—C951.6 (5)C19—O6—Si1—O4−73.6 (4)
O1—C7—C8—C10169.9 (3)C19—O6—Si1—O582.4 (4)
C2—C7—C8—C10−71.8 (5)C19—O6—Si1—C14−175.7 (4)
C9—C8—C11—O262.5 (5)C19—O6—Si1—N25.0 (3)
C10—C8—C11—O2−178.7 (4)C17—O5—Si1—O485.1 (4)
C7—C8—C11—O2−59.7 (5)C17—O5—Si1—O6−71.1 (4)
N1—C12—C13—C14−176.7 (4)C17—O5—Si1—C14−172.7 (4)
C12—C13—C14—Si1178.2 (3)C17—O5—Si1—N26.3 (4)
O4—C15—C16—N240.0 (5)C13—C14—Si1—O4−64.2 (4)
O5—C17—C18—N239.9 (5)C13—C14—Si1—O655.4 (4)
O6—C19—C20—N240.0 (5)C13—C14—Si1—O5176.8 (3)
C13—C12—N1—P193.0 (4)C18—N2—Si1—O4−101.5 (3)
C17—C18—N2—C16−147.6 (4)C16—N2—Si1—O419.1 (3)
C17—C18—N2—C2080.1 (4)C20—N2—Si1—O4138.4 (3)
C17—C18—N2—Si1−33.9 (4)C18—N2—Si1—O6139.0 (3)
C15—C16—N2—C1879.0 (5)C16—N2—Si1—O6−100.4 (3)
C15—C16—N2—C20−148.5 (4)C20—N2—Si1—O619.0 (3)
C15—C16—N2—Si1−35.1 (4)C18—N2—Si1—O517.4 (3)
C19—C20—N2—C18−148.7 (4)C16—N2—Si1—O5138.0 (3)
C19—C20—N2—C1678.4 (5)C20—N2—Si1—O5−102.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.862.052.857 (5)155.
C6—H6···O6ii0.932.453.332 (6)158.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.862.052.857 (5)155
C6—H6⋯O6ii0.932.453.332 (6)158

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Silatranes: a review on their synthesis, structure, reactivity and applications.

Authors:  J K Puri; Raghubir Singh; Varinder Kaur Chahal
Journal:  Chem Soc Rev       Date:  2010-12-20       Impact factor: 54.564

  2 in total

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