Literature DB >> 22199754

Bis{5-[(2-propyn-1-yl-oxy)meth-yl]-1,3-phenyl-ene}-32-crown-10.

Yu Yang1, Zhi-Kai Xu, Deng-Ke Yang, Shao-Wu Pan, La-Sheng Jiang.   

Abstract

The mol-ecule of the title compound {systematic name: 17,35-bis-[(2-propyn-1-yl-oxy)meth-yl]-2,5,8,11,14,20,23,26,29,32-deca-oxatricyclo-[31.3.1.1(15,19)]octa-triaconta-1(37),15,17,19 (38),33,35-hex-a--ene}, C(36)H(48)O(12), has crystallographic inversion symmetry and adopts a chair-like conformation. The polyether bridges of the macrocycle adopt gauche conformations and the cavity of the macrocycle is collapsed. In the crystal structure, there are weak inter-molecular C-H⋯O hydrogen bonds driven in part by the elevated acidity of acetylenyl H atoms.

Entities:  

Year:  2011        PMID: 22199754      PMCID: PMC3238901          DOI: 10.1107/S1600536811046435

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of crown ethers, see: Gokel et al. (2004 ▶); Raymo et al. (1999 ▶) and of bis­phenyl­ene crown erthers, see: Loeb (2007 ▶); Fang et al. (2010 ▶); Kay et al. (2007 ▶). For cryptands, see: Zhang et al. (2010 ▶). For supra­molecular inter­locked structures, see: Xu et al. (2011 ▶) For the synthesis of bis­(5-hy­droxy­methyl-1,3-phenyl­ene)-32-crown-10, see: Gibson & Nagvekar (1997 ▶) and for the synthesis of the title compound, see: Xu et al. (2010 ▶).

Experimental

Crystal data

C36H48O12 M = 672.74 Triclinic, a = 9.2256 (13) Å b = 9.8561 (14) Å c = 10.0808 (14) Å α = 97.213 (2)° β = 98.658 (2)° γ = 99.226 (2)° V = 883.9 (2) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.64 × 0.32 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.965, T max = 0.991 4551 measured reflections 3108 independent reflections 2350 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.113 S = 1.05 3108 reflections 217 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046435/ld2029sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046435/ld2029Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811046435/ld2029Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C36H48O12V = 883.9 (2) Å3
Mr = 672.74Z = 1
Triclinic, P1F(000) = 360
Hall symbol: -P 1Dx = 1.264 Mg m3
a = 9.2256 (13) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.8561 (14) ŵ = 0.09 mm1
c = 10.0808 (14) ÅT = 298 K
α = 97.213 (2)°Block, colourless
β = 98.658 (2)°0.64 × 0.32 × 0.10 mm
γ = 99.226 (2)°
Bruker APEXII CCD diffractometer3108 independent reflections
Radiation source: fine-focus sealed tube2350 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 25.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→10
Tmin = 0.965, Tmax = 0.991k = −7→11
4551 measured reflectionsl = −12→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0506P)2 + 0.1259P] where P = (Fo2 + 2Fc2)/3
3108 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.19258 (19)0.18786 (18)0.55393 (17)0.0405 (4)
H10.09680.18970.57170.049*
C20.21585 (18)0.15530 (18)0.42298 (16)0.0393 (4)
C30.35977 (19)0.15509 (19)0.39575 (17)0.0428 (4)
H30.37440.13350.30680.051*
C50.45832 (19)0.21882 (18)0.63403 (17)0.0427 (4)
H50.53930.24040.70490.051*
C60.31507 (19)0.21810 (18)0.65978 (16)0.0392 (4)
C8−0.13388 (19)0.0898 (2)0.18269 (18)0.0472 (5)
H8A−0.1242−0.00540.15360.057*
H8B−0.23800.09140.18670.057*
C7−0.04096 (18)0.1423 (2)0.32005 (17)0.0456 (4)
H7A−0.04070.24060.34550.055*
H7B−0.08010.09230.38780.055*
C9−0.1580 (2)0.1224 (2)−0.04624 (17)0.0513 (5)
H9A−0.26530.1062−0.05100.062*
H9B−0.12910.0348−0.07620.062*
C100.4014 (2)0.2810 (2)0.89901 (17)0.0519 (5)
H10A0.46190.36880.89160.062*
H10B0.46390.21070.89870.062*
C110.3400 (2)0.2938 (2)1.02859 (17)0.0520 (5)
H11A0.27120.20911.03110.062*
H11B0.42060.30651.10540.062*
C120.2334 (2)0.4423 (2)1.17067 (16)0.0492 (5)
H12A0.32500.48291.23330.059*
H12B0.18860.35881.20180.059*
C130.1296 (2)0.5426 (2)1.16786 (17)0.0513 (5)
H13A0.03560.49981.10980.062*
H13B0.11020.56871.25870.062*
C140.1140 (2)0.7742 (2)1.13577 (19)0.0553 (5)
H14A0.13670.81841.22990.066*
H14B0.00760.73881.11280.066*
C40.47982 (19)0.18667 (18)0.49997 (17)0.0408 (4)
C150.63517 (19)0.1857 (2)0.46986 (19)0.0492 (5)
H15A0.67380.11080.50880.059*
H15B0.62980.16660.37230.059*
C160.6984 (3)0.4263 (2)0.4602 (2)0.0663 (6)
H16A0.76030.51120.51110.080*
H16B0.59540.43190.46560.080*
C180.7341 (2)0.4114 (2)0.2047 (2)0.0671 (6)
H180.74760.40660.11470.081*
C170.7173 (2)0.4175 (2)0.3175 (2)0.0567 (5)
O60.73584 (14)0.31229 (15)0.52126 (12)0.0566 (4)
O10.10633 (13)0.11960 (14)0.31046 (11)0.0512 (4)
O30.28037 (13)0.24304 (13)0.78669 (11)0.0463 (3)
O40.26536 (15)0.40777 (14)1.03810 (11)0.0512 (3)
O50.19356 (13)0.66270 (14)1.11802 (12)0.0506 (3)
O2−0.08593 (13)0.17487 (13)0.08915 (11)0.0490 (3)
U11U22U33U12U13U23
C10.0395 (9)0.0443 (10)0.0403 (10)0.0095 (8)0.0102 (7)0.0095 (8)
C20.0433 (9)0.0424 (10)0.0335 (9)0.0107 (8)0.0051 (7)0.0089 (7)
C30.0487 (10)0.0493 (11)0.0342 (9)0.0136 (8)0.0121 (8)0.0088 (8)
C50.0413 (9)0.0467 (11)0.0391 (10)0.0050 (8)0.0047 (7)0.0095 (8)
C60.0464 (10)0.0416 (10)0.0313 (9)0.0067 (8)0.0113 (7)0.0076 (7)
C80.0416 (9)0.0574 (12)0.0425 (10)0.0079 (9)0.0061 (8)0.0098 (9)
C70.0414 (10)0.0587 (12)0.0398 (10)0.0125 (9)0.0097 (8)0.0122 (9)
C90.0546 (11)0.0577 (12)0.0383 (10)0.0145 (9)−0.0011 (8)0.0002 (9)
C100.0512 (11)0.0671 (13)0.0349 (10)0.0101 (10)0.0029 (8)0.0043 (9)
C110.0608 (12)0.0579 (12)0.0353 (10)0.0090 (10)0.0023 (8)0.0089 (9)
C120.0623 (11)0.0568 (12)0.0271 (9)0.0020 (9)0.0092 (8)0.0103 (8)
C130.0495 (10)0.0712 (14)0.0298 (9)0.0012 (10)0.0071 (8)0.0074 (9)
C140.0589 (11)0.0735 (14)0.0369 (10)0.0245 (11)0.0067 (8)0.0070 (9)
C40.0443 (10)0.0416 (10)0.0399 (10)0.0101 (8)0.0118 (8)0.0106 (8)
C150.0441 (10)0.0566 (12)0.0510 (11)0.0109 (9)0.0140 (8)0.0148 (9)
C160.0830 (15)0.0566 (13)0.0629 (14)0.0066 (12)0.0300 (12)0.0094 (11)
C180.0694 (14)0.0862 (17)0.0565 (14)0.0202 (12)0.0215 (11)0.0315 (12)
C170.0597 (12)0.0608 (13)0.0564 (13)0.0135 (10)0.0199 (10)0.0201 (10)
O60.0530 (8)0.0709 (10)0.0438 (8)−0.0001 (7)0.0092 (6)0.0150 (7)
O10.0435 (7)0.0752 (9)0.0350 (7)0.0193 (6)0.0034 (5)0.0017 (6)
O30.0456 (7)0.0607 (8)0.0307 (6)0.0048 (6)0.0077 (5)0.0051 (6)
O40.0700 (8)0.0582 (8)0.0279 (6)0.0123 (7)0.0118 (6)0.0114 (6)
O50.0489 (7)0.0630 (9)0.0454 (7)0.0154 (6)0.0136 (6)0.0163 (6)
O20.0529 (7)0.0567 (8)0.0336 (7)0.0045 (6)0.0002 (5)0.0078 (6)
C1—C21.376 (2)C10—H10B0.9700
C1—C61.398 (2)C11—O41.409 (2)
C1—H10.9300C11—H11A0.9700
C2—O11.3682 (19)C11—H11B0.9700
C2—C31.396 (2)C12—O41.423 (2)
C3—C41.373 (2)C12—C131.482 (3)
C3—H30.9300C12—H12A0.9700
C5—C61.384 (2)C12—H12B0.9700
C5—C41.400 (2)C13—O51.420 (2)
C5—H50.9300C13—H13A0.9700
C6—O31.3672 (19)C13—H13B0.9700
C8—O21.412 (2)C14—O51.423 (2)
C8—C71.497 (2)C14—C9i1.492 (3)
C8—H8A0.9700C14—H14A0.9700
C8—H8B0.9700C14—H14B0.9700
C7—O11.428 (2)C4—C151.510 (2)
C7—H7A0.9700C15—O61.418 (2)
C7—H7B0.9700C15—H15A0.9700
C9—O21.418 (2)C15—H15B0.9700
C9—C14i1.492 (3)C16—O61.412 (3)
C9—H9A0.9700C16—C171.468 (3)
C9—H9B0.9700C16—H16A0.9700
C10—O31.431 (2)C16—H16B0.9700
C10—C111.499 (2)C18—C171.167 (3)
C10—H10A0.9700C18—H180.9300
C2—C1—C6118.97 (15)C10—C11—H11B109.6
C2—C1—H1120.5H11A—C11—H11B108.1
C6—C1—H1120.5O4—C12—C13109.57 (14)
O1—C2—C1125.21 (15)O4—C12—H12A109.8
O1—C2—C3114.18 (14)C13—C12—H12A109.8
C1—C2—C3120.60 (15)O4—C12—H12B109.8
C4—C3—C2120.15 (15)C13—C12—H12B109.8
C4—C3—H3119.9H12A—C12—H12B108.2
C2—C3—H3119.9O5—C13—C12109.56 (15)
C6—C5—C4119.21 (15)O5—C13—H13A109.8
C6—C5—H5120.4C12—C13—H13A109.8
C4—C5—H5120.4O5—C13—H13B109.8
O3—C6—C5124.27 (15)C12—C13—H13B109.8
O3—C6—C1114.76 (14)H13A—C13—H13B108.2
C5—C6—C1120.95 (15)O5—C14—C9i109.25 (15)
O2—C8—C7109.34 (15)O5—C14—H14A109.8
O2—C8—H8A109.8C9i—C14—H14A109.8
C7—C8—H8A109.8O5—C14—H14B109.8
O2—C8—H8B109.8C9i—C14—H14B109.8
C7—C8—H8B109.8H14A—C14—H14B108.3
H8A—C8—H8B108.3C3—C4—C5120.11 (15)
O1—C7—C8106.52 (14)C3—C4—C15119.87 (15)
O1—C7—H7A110.4C5—C4—C15120.02 (16)
C8—C7—H7A110.4O6—C15—C4113.54 (15)
O1—C7—H7B110.4O6—C15—H15A108.9
C8—C7—H7B110.4C4—C15—H15A108.9
H7A—C7—H7B108.6O6—C15—H15B108.9
O2—C9—C14i108.95 (16)C4—C15—H15B108.9
O2—C9—H9A109.9H15A—C15—H15B107.7
C14i—C9—H9A109.9O6—C16—C17113.58 (17)
O2—C9—H9B109.9O6—C16—H16A108.8
C14i—C9—H9B109.9C17—C16—H16A108.8
H9A—C9—H9B108.3O6—C16—H16B108.8
O3—C10—C11109.13 (15)C17—C16—H16B108.8
O3—C10—H10A109.9H16A—C16—H16B107.7
C11—C10—H10A109.9C17—C18—H18180.0
O3—C10—H10B109.9C18—C17—C16179.1 (2)
C11—C10—H10B109.9C16—O6—C15113.57 (15)
H10A—C10—H10B108.3C2—O1—C7119.54 (13)
O4—C11—C10110.25 (15)C6—O3—C10117.49 (13)
O4—C11—H11A109.6C11—O4—C12112.09 (13)
C10—C11—H11A109.6C13—O5—C14112.83 (14)
O4—C11—H11B109.6C8—O2—C9112.47 (14)
C6—C1—C2—O1177.94 (16)C5—C4—C15—O6−55.4 (2)
C6—C1—C2—C3−1.3 (3)O6—C16—C17—C18−90 (17)
O1—C2—C3—C4−178.87 (15)C17—C16—O6—C15−69.0 (2)
C1—C2—C3—C40.4 (3)C4—C15—O6—C16−64.9 (2)
C4—C5—C6—O3177.64 (16)C1—C2—O1—C713.2 (3)
C4—C5—C6—C1−1.0 (3)C3—C2—O1—C7−167.59 (15)
C2—C1—C6—O3−177.18 (15)C8—C7—O1—C2−178.61 (15)
C2—C1—C6—C51.5 (3)C5—C6—O3—C104.2 (2)
O2—C8—C7—O1−67.06 (18)C1—C6—O3—C10−177.17 (16)
O3—C10—C11—O4−67.2 (2)C11—C10—O3—C6−176.06 (15)
O4—C12—C13—O5−57.51 (19)C10—C11—O4—C12−167.39 (15)
C2—C3—C4—C50.2 (3)C13—C12—O4—C11−168.70 (16)
C2—C3—C4—C15179.74 (16)C12—C13—O5—C14−169.02 (14)
C6—C5—C4—C30.1 (3)C9i—C14—O5—C13−163.09 (15)
C6—C5—C4—C15−179.47 (16)C7—C8—O2—C9173.50 (14)
C3—C4—C15—O6125.04 (18)C14i—C9—O2—C8173.71 (15)
D—H···AD—HH···AD···AD—H···A
C13—H13B···O6ii0.972.493.247 (2)135.
C18—H18···O4iii0.932.543.203 (2)128.
C18—H18···O5iii0.932.523.431 (3)166.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13B⋯O6i0.972.493.247 (2)135
C18—H18⋯O4ii0.932.543.203 (2)128
C18—H18⋯O5ii0.932.523.431 (3)166

Symmetry codes: (i) ; (ii) .

  8 in total

1.  Interlocked Macromolecules.

Authors:  Françisco M. Raymo; J. Fraser Stoddart
Journal:  Chem Rev       Date:  1999-07-14       Impact factor: 60.622

Review 2.  Crown ethers: sensors for ions and molecular scaffolds for materials and biological models.

Authors:  George W Gokel; W Matthew Leevy; Michelle E Weber
Journal:  Chem Rev       Date:  2004-05       Impact factor: 60.622

3.  Synthetic molecular motors and mechanical machines.

Authors:  Euan R Kay; David A Leigh; Francesco Zerbetto
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Mechanically bonded macromolecules.

Authors:  Lei Fang; Mark A Olson; Diego Benítez; Ekaterina Tkatchouk; William A Goddard; J Fraser Stoddart
Journal:  Chem Soc Rev       Date:  2009-11-18       Impact factor: 54.564

6.  Improved complexation of paraquat derivatives by the formation of crown ether-based cryptands.

Authors:  Mingming Zhang; Kelong Zhu; Feihe Huang
Journal:  Chem Commun (Camb)       Date:  2010-09-10       Impact factor: 6.222

7.  One-pot synthesis of donor-acceptor [2]rotaxanes based on cryptand-paraquat recognition motif.

Authors:  Zhikai Xu; Lasheng Jiang; Yahui Feng; Suhui Zhang; Jidong Liang; Shaowu Pan; Yu Yang; Dengke Yang; Yuepeng Cai
Journal:  Org Biomol Chem       Date:  2011-01-05       Impact factor: 3.876

8.  Rotaxanes as ligands: from molecules to materials.

Authors:  Stephen J Loeb
Journal:  Chem Soc Rev       Date:  2006-11-20       Impact factor: 54.564

  8 in total

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