Literature DB >> 22199744

3-Benzyl-amino-2-cyano-N-[N-(2-fluoro-phenyl)-carbamo-yl]-3-(methyl-sulfanyl)acryl-amide.

Shihua Zhong1, Mingliang Fan, Jianbing Liu, Bingyu Liu.   

Abstract

In the crystal structure of the title compound, C(19)H(17)FN(4)O(2)S, mol-ecules are linked via pairs of N-H⋯N inter-actions, forming centrosymmetric dimers. Two intra-molecular N-H⋯O hydrogen bonds stabilize the mol-ecular conformation.

Entities:  

Year:  2011        PMID: 22199744      PMCID: PMC3238891          DOI: 10.1107/S1600536811046125

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesized as a herbicide. For details of the synthesis, see: Wang et al. (2004 ▶); Senda et al. (1972 ▶); Xue et al. (2002 ▶); Liu et al. (1998 ▶); Zhang et al. (2008 ▶).

Experimental

Crystal data

C19H17FN4O2S M = 384.43 Triclinic, a = 9.2415 (18) Å b = 10.047 (2) Å c = 11.0949 (19) Å α = 73.312 (6)° β = 66.880 (6)° γ = 84.295 (7)° V = 907.4 (3) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 133 K 0.48 × 0.39 × 0.39 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.906, T max = 0.923 8644 measured reflections 4089 independent reflections 3137 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.079 S = 1.00 4089 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811046125/ds2144sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046125/ds2144Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811046125/ds2144Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H17FN4O2SZ = 2
Mr = 384.43F(000) = 400
Triclinic, P1Dx = 1.407 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.2415 (18) ÅCell parameters from 2908 reflections
b = 10.047 (2) Åθ = 2.4–29.1°
c = 11.0949 (19) ŵ = 0.21 mm1
α = 73.312 (6)°T = 133 K
β = 66.880 (6)°Block, colourless
γ = 84.295 (7)°0.48 × 0.39 × 0.39 mm
V = 907.4 (3) Å3
Rigaku AFC10/Saturn724+ diffractometer4089 independent reflections
Radiation source: Rotating Anode3137 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 2.1°
phi and ω scansh = −11→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −13→13
Tmin = 0.906, Tmax = 0.923l = −14→12
8644 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0296P)2 + 0.119P] where P = (Fo2 + 2Fc2)/3
4089 reflections(Δ/σ)max = 0.001
251 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.42534 (5)0.14869 (4)0.89857 (4)0.02801 (11)
F10.21687 (11)0.56288 (9)0.25643 (8)0.0357 (2)
O10.27259 (13)0.42794 (11)0.56187 (9)0.0295 (3)
O2−0.00916 (14)0.75621 (12)0.64645 (10)0.0363 (3)
N10.43164 (14)0.22266 (12)0.65160 (11)0.0222 (3)
N20.10887 (14)0.55174 (12)0.70402 (12)0.0228 (3)
N30.11794 (15)0.64303 (13)0.48270 (12)0.0239 (3)
N40.05563 (16)0.35724 (14)1.03305 (12)0.0341 (3)
C10.63303 (18)−0.12037 (16)0.63660 (14)0.0265 (3)
H10.7399−0.09010.59500.032*
C20.5979 (2)−0.26010 (17)0.67324 (16)0.0360 (4)
H20.6802−0.32540.65670.043*
C30.4422 (2)−0.30499 (17)0.73435 (16)0.0394 (4)
H30.4175−0.40120.75960.047*
C40.3231 (2)−0.20958 (17)0.75847 (15)0.0347 (4)
H40.2164−0.24030.80060.042*
C50.35910 (18)−0.06872 (16)0.72123 (14)0.0259 (3)
H50.2768−0.00350.73820.031*
C60.51439 (16)−0.02309 (14)0.65956 (12)0.0199 (3)
C70.56151 (16)0.12821 (14)0.61482 (14)0.0223 (3)
H7A0.63650.13900.65530.027*
H7B0.61750.15590.51460.027*
C80.36183 (16)0.25079 (14)0.77143 (13)0.0194 (3)
C90.24408 (17)0.35141 (14)0.79187 (13)0.0219 (2)
C100.21072 (17)0.44413 (15)0.67827 (13)0.0218 (3)
C110.06720 (17)0.66004 (15)0.60914 (14)0.0235 (3)
C120.10494 (16)0.73778 (15)0.36651 (13)0.0220 (3)
C130.05148 (17)0.87350 (16)0.35728 (15)0.0287 (3)
H130.01370.90760.43550.034*
C140.05355 (18)0.95894 (17)0.23327 (16)0.0354 (4)
H140.01891.05200.22710.042*
C150.10502 (19)0.91076 (18)0.11951 (16)0.0378 (4)
H150.10440.97010.03590.045*
C160.15778 (19)0.77617 (18)0.12629 (15)0.0330 (4)
H160.19270.74140.04850.040*
C170.15823 (17)0.69412 (15)0.24895 (14)0.0259 (3)
C180.4107 (2)0.25546 (18)1.00866 (16)0.0385 (4)
H18A0.43720.35210.95440.058*
H18B0.48390.22221.05480.058*
H18C0.30300.25011.07670.058*
C190.14271 (17)0.35427 (15)0.92622 (13)0.0219 (2)
H3N0.1721 (19)0.5738 (17)0.4704 (15)0.030 (5)*
H2N0.0681 (19)0.5644 (16)0.7839 (16)0.035 (5)*
H1N0.394 (2)0.2677 (18)0.5923 (17)0.040 (5)*
U11U22U33U12U13U23
S10.0371 (2)0.0269 (2)0.02340 (19)0.00577 (17)−0.01710 (17)−0.00569 (15)
F10.0496 (6)0.0324 (5)0.0293 (5)0.0090 (4)−0.0187 (4)−0.0121 (4)
O10.0418 (7)0.0305 (6)0.0189 (5)0.0157 (5)−0.0141 (5)−0.0122 (4)
O20.0447 (7)0.0339 (7)0.0331 (6)0.0205 (6)−0.0174 (5)−0.0163 (5)
N10.0279 (7)0.0215 (7)0.0191 (6)0.0080 (5)−0.0107 (5)−0.0082 (5)
N20.0267 (7)0.0248 (7)0.0179 (6)0.0071 (5)−0.0086 (5)−0.0096 (5)
N30.0289 (7)0.0202 (7)0.0236 (6)0.0069 (6)−0.0117 (5)−0.0073 (5)
N40.0354 (8)0.0392 (8)0.0242 (7)0.0105 (7)−0.0087 (6)−0.0108 (6)
C10.0287 (8)0.0298 (8)0.0253 (7)0.0082 (7)−0.0129 (7)−0.0125 (6)
C20.0572 (12)0.0292 (9)0.0354 (9)0.0155 (8)−0.0299 (9)−0.0166 (7)
C30.0736 (14)0.0225 (9)0.0310 (8)−0.0057 (9)−0.0287 (9)−0.0059 (7)
C40.0418 (10)0.0380 (10)0.0239 (8)−0.0138 (8)−0.0074 (7)−0.0103 (7)
C50.0257 (8)0.0303 (8)0.0232 (7)0.0001 (7)−0.0070 (6)−0.0127 (6)
C60.0231 (7)0.0241 (7)0.0140 (6)0.0031 (6)−0.0079 (6)−0.0075 (5)
C70.0190 (7)0.0233 (8)0.0216 (7)0.0028 (6)−0.0044 (6)−0.0074 (6)
C80.0229 (7)0.0182 (7)0.0180 (6)−0.0018 (6)−0.0085 (6)−0.0046 (5)
C90.0264 (5)0.0216 (5)0.0189 (5)0.0030 (4)−0.0093 (4)−0.0073 (4)
C100.0241 (7)0.0222 (7)0.0206 (7)0.0025 (6)−0.0083 (6)−0.0091 (6)
C110.0225 (8)0.0234 (8)0.0262 (7)0.0028 (6)−0.0108 (6)−0.0078 (6)
C120.0182 (7)0.0225 (8)0.0243 (7)−0.0019 (6)−0.0099 (6)−0.0016 (6)
C130.0227 (8)0.0274 (8)0.0339 (8)0.0034 (6)−0.0114 (7)−0.0052 (6)
C140.0254 (8)0.0298 (9)0.0444 (9)0.0018 (7)−0.0160 (8)0.0030 (7)
C150.0284 (9)0.0434 (11)0.0354 (9)−0.0044 (8)−0.0190 (8)0.0098 (7)
C160.0303 (9)0.0428 (10)0.0262 (8)−0.0024 (7)−0.0146 (7)−0.0034 (7)
C170.0242 (8)0.0255 (8)0.0291 (8)0.0005 (6)−0.0129 (7)−0.0051 (6)
C180.0453 (10)0.0519 (11)0.0315 (8)0.0081 (9)−0.0240 (8)−0.0198 (8)
C190.0264 (5)0.0216 (5)0.0189 (5)0.0030 (4)−0.0093 (4)−0.0073 (4)
S1—C81.7567 (13)C4—H40.9500
S1—C181.8041 (15)C5—C61.385 (2)
F1—C171.3674 (16)C5—H50.9500
O1—C101.2424 (16)C6—C71.5085 (19)
O2—C111.2115 (16)C7—H7A0.9900
N1—C81.3303 (17)C7—H7B0.9900
N1—C71.4556 (17)C8—C91.4060 (18)
N1—H1N0.860 (17)C9—C191.4223 (19)
N2—C101.3785 (17)C9—C101.4577 (18)
N2—C111.4204 (17)C12—C171.3847 (19)
N2—H2N0.858 (15)C12—C131.393 (2)
N3—C111.3499 (18)C13—C141.391 (2)
N3—C121.4059 (17)C13—H130.9500
N3—H3N0.827 (16)C14—C151.374 (2)
N4—C191.1488 (17)C14—H140.9500
C1—C21.379 (2)C15—C161.382 (2)
C1—C61.3903 (19)C15—H150.9500
C1—H10.9500C16—C171.375 (2)
C2—C31.386 (2)C16—H160.9500
C2—H20.9500C18—H18A0.9800
C3—C41.382 (2)C18—H18B0.9800
C3—H30.9500C18—H18C0.9800
C4—C51.391 (2)
C8—S1—C18106.50 (7)C9—C8—S1124.36 (10)
C8—N1—C7126.66 (12)C8—C9—C19120.11 (12)
C8—N1—H1N113.5 (11)C8—C9—C10121.33 (12)
C7—N1—H1N119.8 (11)C19—C9—C10118.19 (12)
C10—N2—C11127.92 (12)O1—C10—N2120.88 (12)
C10—N2—H2N120.9 (11)O1—C10—C9121.44 (12)
C11—N2—H2N110.9 (11)N2—C10—C9117.68 (12)
C11—N3—C12127.09 (13)O2—C11—N3126.13 (13)
C11—N3—H3N116.0 (11)O2—C11—N2119.24 (12)
C12—N3—H3N116.4 (11)N3—C11—N2114.63 (12)
C2—C1—C6121.00 (16)C17—C12—C13117.29 (13)
C2—C1—H1119.5C17—C12—N3116.69 (13)
C6—C1—H1119.5C13—C12—N3125.92 (13)
C1—C2—C3119.78 (16)C14—C13—C12119.87 (14)
C1—C2—H2120.1C14—C13—H13120.1
C3—C2—H2120.1C12—C13—H13120.1
C4—C3—C2119.85 (16)C15—C14—C13120.97 (16)
C4—C3—H3120.1C15—C14—H14119.5
C2—C3—H3120.1C13—C14—H14119.5
C3—C4—C5120.16 (16)C14—C15—C16120.23 (14)
C3—C4—H4119.9C14—C15—H15119.9
C5—C4—H4119.9C16—C15—H15119.9
C6—C5—C4120.29 (15)C17—C16—C15118.02 (15)
C6—C5—H5119.9C17—C16—H16121.0
C4—C5—H5119.9C15—C16—H16121.0
C5—C6—C1118.91 (14)F1—C17—C16119.01 (13)
C5—C6—C7122.99 (13)F1—C17—C12117.38 (12)
C1—C6—C7118.09 (13)C16—C17—C12123.59 (14)
N1—C7—C6114.88 (12)S1—C18—H18A109.5
N1—C7—H7A108.5S1—C18—H18B109.5
C6—C7—H7A108.5H18A—C18—H18B109.5
N1—C7—H7B108.5S1—C18—H18C109.5
C6—C7—H7B108.5H18A—C18—H18C109.5
H7A—C7—H7B107.5H18B—C18—H18C109.5
N1—C8—C9121.34 (12)N4—C19—C9177.14 (16)
N1—C8—S1114.28 (10)
C6—C1—C2—C3−0.2 (2)C19—C9—C10—O1−165.04 (14)
C1—C2—C3—C4−0.1 (2)C8—C9—C10—N2−171.45 (13)
C2—C3—C4—C50.2 (2)C19—C9—C10—N215.5 (2)
C3—C4—C5—C60.1 (2)C12—N3—C11—O26.0 (3)
C4—C5—C6—C1−0.5 (2)C12—N3—C11—N2−174.67 (13)
C4—C5—C6—C7179.10 (12)C10—N2—C11—O2−170.90 (14)
C2—C1—C6—C50.52 (19)C10—N2—C11—N39.7 (2)
C2—C1—C6—C7−179.06 (12)C11—N3—C12—C17−176.54 (14)
C8—N1—C7—C681.84 (17)C11—N3—C12—C137.2 (2)
C5—C6—C7—N14.96 (18)C17—C12—C13—C14−0.1 (2)
C1—C6—C7—N1−175.49 (12)N3—C12—C13—C14176.14 (14)
C7—N1—C8—C9175.63 (13)C12—C13—C14—C151.2 (2)
C7—N1—C8—S1−6.28 (19)C13—C14—C15—C16−0.8 (2)
C18—S1—C8—N1148.59 (11)C14—C15—C16—C17−0.6 (2)
C18—S1—C8—C9−33.39 (15)C15—C16—C17—F1−176.93 (14)
N1—C8—C9—C19163.12 (14)C15—C16—C17—C121.8 (2)
S1—C8—C9—C19−14.8 (2)C13—C12—C17—F1177.34 (13)
N1—C8—C9—C10−9.8 (2)N3—C12—C17—F10.7 (2)
S1—C8—C9—C10172.35 (11)C13—C12—C17—C16−1.4 (2)
C11—N2—C10—O1−4.2 (2)N3—C12—C17—C16−178.01 (14)
C11—N2—C10—C9175.25 (14)C8—C9—C19—N4−135 (3)
C8—C9—C10—O18.0 (2)C10—C9—C19—N438 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10.860 (17)1.894 (17)2.6024 (15)138.7 (15)
N3—H3N···O10.827 (16)1.912 (16)2.6012 (16)140.1 (14)
N2—H2N···N4i0.858 (15)2.229 (16)3.0710 (17)166.8 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O10.860 (17)1.894 (17)2.6024 (15)138.7 (15)
N3—H3N⋯O10.827 (16)1.912 (16)2.6012 (16)140.1 (14)
N2—H2N⋯N4i0.858 (15)2.229 (16)3.0710 (17)166.8 (14)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and herbicidal activity of 2-cyano-3-(2-chlorothiazol-5-yl)methylaminoacrylates.

Authors:  Qingmin Wang; Heng Li; Yonghong Li; Runqiu Huang
Journal:  J Agric Food Chem       Date:  2004-04-07       Impact factor: 5.279

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.