Literature DB >> 22199724

9-(2,5-Dimethyl-phen-oxy-carbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Damian Trzybiński1, Karol Krzymiński, Jerzy Błażejowski.   

Abstract

In the title compound, C(23)H(20)NO(2) (+)·CF(3)SO(3) (-), the acridine ring system is oriented at a dihedral angle of 23.1 (1)° with respect to the benzene ring and the carboxyl group is twisted at an angle of 74.1 (1)° relative to the acridine skeleton. In the crystal, adjacent cations are linked through C-H⋯π inter-actions and neighboring cations and anions via weak C-H⋯O hydrogen bonds. The mean planes of adjacent acridine units are either parallel or inclined at angles of 15.0 (1), 26.9 (1) and 48.1 (1)° in the crystal structure.

Entities:  

Year:  2011        PMID: 22199724      PMCID: PMC3238871          DOI: 10.1107/S1600536811045090

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemiluminogenic properties of 9-phen­oxy­carbonyl-10-methyl­acridinium trifluoro­meth­ane­­sulfonates, see: Brown et al. (2009 ▶); King et al. (2007 ▶); Krzymiński et al. (2011 ▶); Roda et al. (2003 ▶). For related structures, see: Krzymiński et al. (2009 ▶). For inter­molecular inter­actions, see: Novoa et al. (2006 ▶); Takahashi et al. (2001 ▶). For the synthesis, see: Sato (1996 ▶); Krzymiński et al. (2011 ▶).

Experimental

Crystal data

C23H20NO2CF3SO3 M = 491.48 Orthorhombic, a = 12.3604 (17) Å b = 17.341 (3) Å c = 21.101 (3) Å V = 4522.8 (12) Å3 Z = 8 Mo Kα radiation μ = 0.21 mm−1 T = 295 K 0.60 × 0.15 × 0.10 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.960, T max = 0.985 32535 measured reflections 4000 independent reflections 2050 reflections with I > 2σ(I) R int = 0.106

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.185 S = 1.01 4000 reflections 310 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811045090/xu5358sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811045090/xu5358Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811045090/xu5358Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20NO2+·CF3SO3F(000) = 2032
Mr = 491.48Dx = 1.444 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 4734 reflections
a = 12.3604 (17) Åθ = 3.4–26.0°
b = 17.341 (3) ŵ = 0.21 mm1
c = 21.101 (3) ÅT = 295 K
V = 4522.8 (12) Å3Needle, yellow
Z = 80.60 × 0.15 × 0.10 mm
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer4000 independent reflections
Radiation source: enhanced (Mo) X-ray source2050 reflections with I > 2σ(I)
graphiteRint = 0.106
Detector resolution: 10.4002 pixels mm-1θmax = 25.1°, θmin = 3.5°
ω scansh = −14→12
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −20→20
Tmin = 0.960, Tmax = 0.985l = −23→25
32535 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.185H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0901P)2 + 0.2728P] where P = (Fo2 + 2Fc2)/3
4000 reflections(Δ/σ)max < 0.001
310 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.7203 (3)0.1485 (2)0.5953 (2)0.0692 (11)
H10.74520.09810.59060.083*
C20.7290 (4)0.1843 (3)0.6520 (2)0.0872 (14)
H20.75990.15870.68630.105*
C30.6911 (4)0.2608 (3)0.6593 (2)0.0858 (14)
H30.69770.28490.69840.103*
C40.6455 (3)0.2995 (2)0.6105 (2)0.0713 (12)
H40.61970.34930.61670.086*
C50.5462 (3)0.3125 (2)0.3893 (2)0.0667 (11)
H50.52350.36330.39430.080*
C60.5383 (4)0.2782 (2)0.3321 (2)0.0815 (13)
H60.51020.30610.29810.098*
C70.5711 (4)0.2021 (2)0.3224 (2)0.0720 (12)
H70.56370.17960.28260.086*
C80.6132 (3)0.1613 (2)0.3704 (2)0.0600 (10)
H80.63650.11110.36330.072*
C90.6641 (3)0.15331 (18)0.48358 (18)0.0474 (9)
N100.5964 (2)0.30431 (15)0.50005 (16)0.0503 (7)
C110.6738 (3)0.18708 (19)0.54298 (17)0.0502 (9)
C120.6370 (3)0.26519 (19)0.55098 (19)0.0503 (9)
C130.6231 (2)0.19343 (17)0.43212 (17)0.0452 (9)
C140.5886 (3)0.27166 (18)0.44149 (19)0.0493 (9)
C150.7004 (3)0.07054 (19)0.47513 (17)0.0504 (9)
O160.61431 (18)0.02474 (12)0.47079 (13)0.0576 (7)
O170.7921 (2)0.05008 (14)0.47341 (14)0.0755 (9)
C180.6283 (3)−0.05622 (18)0.46459 (19)0.0483 (9)
C190.6315 (3)−0.09995 (19)0.51964 (19)0.0518 (9)
C200.6311 (2)−0.1796 (2)0.5100 (2)0.0563 (10)
H200.6318−0.21210.54510.068*
C210.6297 (3)−0.2116 (2)0.4508 (2)0.0552 (10)
H210.6294−0.26500.44680.066*
C220.6289 (3)−0.16674 (19)0.39689 (19)0.0542 (10)
C230.6272 (3)−0.08684 (19)0.4050 (2)0.0553 (10)
H230.6252−0.05450.36990.066*
C240.6348 (3)−0.0649 (2)0.5843 (2)0.0699 (11)
H24A0.5841−0.02310.58650.105*
H24B0.7063−0.04590.59270.105*
H24C0.6161−0.10320.61530.105*
C250.6290 (4)−0.2022 (2)0.3319 (2)0.0846 (13)
H25A0.7006−0.19950.31430.127*
H25B0.5796−0.17460.30510.127*
H25C0.6070−0.25520.33480.127*
C260.5592 (3)0.38590 (18)0.5077 (2)0.0727 (12)
H26A0.56230.40000.55170.109*
H26B0.48620.39060.49270.109*
H26C0.60540.41940.48360.109*
S270.44245 (10)0.50390 (5)0.30301 (6)0.0740 (4)
O280.4254 (3)0.43431 (19)0.2715 (2)0.1310 (14)
O290.3900 (3)0.57019 (19)0.2803 (2)0.1239 (13)
O300.4320 (3)0.4936 (2)0.37051 (17)0.1162 (12)
C310.5832 (5)0.5223 (4)0.2920 (3)0.1130 (19)
F320.6101 (4)0.5876 (3)0.3223 (3)0.218 (3)
F330.6458 (3)0.4707 (3)0.3148 (2)0.1741 (18)
F340.6094 (4)0.5364 (4)0.2353 (3)0.221 (3)
U11U22U33U12U13U23
C10.084 (3)0.060 (2)0.064 (3)0.000 (2)−0.005 (2)0.006 (2)
C20.113 (4)0.092 (4)0.056 (3)0.000 (3)−0.015 (3)0.008 (3)
C30.103 (3)0.097 (4)0.058 (3)−0.004 (3)0.010 (3)−0.017 (3)
C40.074 (3)0.072 (3)0.068 (3)0.001 (2)0.009 (2)−0.011 (3)
C50.085 (3)0.039 (2)0.076 (3)0.0017 (18)−0.002 (2)0.014 (2)
C60.115 (4)0.061 (3)0.069 (3)0.000 (2)−0.019 (3)0.016 (3)
C70.107 (3)0.059 (3)0.050 (3)−0.010 (2)−0.005 (2)0.002 (2)
C80.076 (3)0.044 (2)0.061 (3)−0.0047 (17)0.006 (2)−0.002 (2)
C90.0457 (18)0.0386 (18)0.058 (3)−0.0028 (14)0.0055 (17)0.0033 (18)
N100.0522 (16)0.0377 (15)0.061 (2)−0.0010 (12)0.0015 (15)−0.0024 (16)
C110.057 (2)0.045 (2)0.049 (2)−0.0060 (16)0.0012 (18)0.0022 (19)
C120.0508 (19)0.049 (2)0.051 (3)−0.0053 (16)0.0118 (17)−0.005 (2)
C130.0497 (19)0.0353 (18)0.051 (2)−0.0035 (14)0.0058 (16)0.0035 (18)
C140.052 (2)0.0384 (18)0.057 (3)−0.0064 (15)0.0017 (18)0.0023 (19)
C150.054 (2)0.0421 (19)0.056 (3)0.0008 (17)0.0040 (18)0.0039 (17)
O160.0504 (14)0.0342 (12)0.088 (2)0.0021 (10)0.0011 (13)0.0011 (13)
O170.0518 (16)0.0522 (15)0.123 (3)0.0057 (12)0.0045 (16)−0.0069 (16)
C180.0467 (19)0.0346 (18)0.064 (3)0.0009 (14)−0.0008 (18)0.0045 (19)
C190.0448 (19)0.048 (2)0.062 (3)−0.0001 (15)−0.0006 (18)0.005 (2)
C200.050 (2)0.047 (2)0.072 (3)−0.0021 (16)−0.0019 (19)0.023 (2)
C210.051 (2)0.0379 (19)0.076 (3)−0.0014 (15)−0.0022 (19)0.005 (2)
C220.058 (2)0.044 (2)0.061 (3)0.0023 (16)−0.0029 (19)0.003 (2)
C230.061 (2)0.042 (2)0.062 (3)0.0027 (16)−0.0010 (19)0.014 (2)
C240.075 (3)0.071 (3)0.064 (3)−0.001 (2)0.001 (2)0.003 (2)
C250.117 (4)0.064 (3)0.073 (3)0.004 (2)−0.008 (3)−0.004 (2)
C260.087 (3)0.040 (2)0.092 (3)0.0105 (19)0.001 (2)−0.013 (2)
S270.1049 (9)0.0443 (6)0.0728 (9)0.0084 (5)−0.0034 (6)−0.0028 (6)
O280.172 (4)0.080 (2)0.141 (4)0.003 (2)−0.026 (3)−0.040 (2)
O290.140 (3)0.080 (2)0.152 (4)0.027 (2)−0.003 (3)0.034 (2)
O300.166 (4)0.112 (3)0.071 (2)0.007 (2)0.020 (2)0.007 (2)
C310.130 (5)0.102 (4)0.108 (5)−0.007 (4)0.007 (4)0.029 (4)
F320.187 (4)0.143 (4)0.323 (8)−0.075 (3)−0.048 (4)0.026 (4)
F330.110 (3)0.186 (4)0.227 (5)0.038 (2)0.005 (2)0.091 (3)
F340.167 (4)0.357 (7)0.139 (4)0.025 (4)0.059 (3)0.111 (5)
C1—C21.354 (6)O16—C181.421 (4)
C1—C111.413 (5)C18—C231.364 (5)
C1—H10.9300C18—C191.388 (5)
C2—C31.415 (6)C19—C201.397 (5)
C2—H20.9300C19—C241.495 (5)
C3—C41.352 (6)C20—C211.367 (5)
C3—H30.9300C20—H200.9300
C4—C121.394 (5)C21—C221.378 (5)
C4—H40.9300C21—H210.9300
C5—C61.349 (6)C22—C231.396 (5)
C5—C141.411 (5)C22—C251.503 (6)
C5—H50.9300C23—H230.9300
C6—C71.397 (6)C24—H24A0.9600
C6—H60.9300C24—H24B0.9600
C7—C81.340 (5)C24—H24C0.9600
C7—H70.9300C25—H25A0.9600
C8—C131.421 (5)C25—H25B0.9600
C8—H80.9300C25—H25C0.9600
C9—C131.386 (5)C26—H26A0.9600
C9—C111.389 (5)C26—H26B0.9600
C9—C151.514 (5)C26—H26C0.9600
N10—C141.363 (4)S27—O281.394 (3)
N10—C121.366 (4)S27—O291.404 (3)
N10—C261.496 (4)S27—O301.441 (4)
C11—C121.439 (5)S27—C311.784 (7)
C13—C141.436 (4)C31—F341.264 (6)
C15—O171.188 (4)C31—F331.276 (6)
C15—O161.331 (4)C31—F321.343 (7)
C2—C1—C11120.4 (4)C23—C18—O16117.9 (3)
C2—C1—H1119.8C19—C18—O16117.8 (3)
C11—C1—H1119.8C18—C19—C20114.7 (4)
C1—C2—C3120.0 (4)C18—C19—C24122.9 (3)
C1—C2—H2120.0C20—C19—C24122.4 (4)
C3—C2—H2120.0C21—C20—C19122.3 (4)
C4—C3—C2121.4 (4)C21—C20—H20118.8
C4—C3—H3119.3C19—C20—H20118.8
C2—C3—H3119.3C20—C21—C22121.7 (3)
C3—C4—C12120.4 (4)C20—C21—H21119.2
C3—C4—H4119.8C22—C21—H21119.2
C12—C4—H4119.8C21—C22—C23117.3 (4)
C6—C5—C14120.3 (4)C21—C22—C25121.4 (3)
C6—C5—H5119.8C23—C22—C25121.2 (4)
C14—C5—H5119.8C18—C23—C22120.0 (3)
C5—C6—C7121.7 (4)C18—C23—H23120.0
C5—C6—H6119.1C22—C23—H23120.0
C7—C6—H6119.1C19—C24—H24A109.5
C8—C7—C6120.1 (4)C19—C24—H24B109.5
C8—C7—H7120.0H24A—C24—H24B109.5
C6—C7—H7120.0C19—C24—H24C109.5
C7—C8—C13121.3 (3)H24A—C24—H24C109.5
C7—C8—H8119.3H24B—C24—H24C109.5
C13—C8—H8119.3C22—C25—H25A109.5
C13—C9—C11121.8 (3)C22—C25—H25B109.5
C13—C9—C15119.5 (3)H25A—C25—H25B109.5
C11—C9—C15118.7 (3)C22—C25—H25C109.5
C14—N10—C12122.2 (3)H25A—C25—H25C109.5
C14—N10—C26118.0 (3)H25B—C25—H25C109.5
C12—N10—C26119.8 (3)N10—C26—H26A109.5
C9—C11—C1122.7 (3)N10—C26—H26B109.5
C9—C11—C12118.4 (3)H26A—C26—H26B109.5
C1—C11—C12118.9 (3)N10—C26—H26C109.5
N10—C12—C4121.6 (3)H26A—C26—H26C109.5
N10—C12—C11119.4 (3)H26B—C26—H26C109.5
C4—C12—C11118.9 (4)O28—S27—O29118.4 (3)
C9—C13—C8123.5 (3)O28—S27—O30110.5 (2)
C9—C13—C14118.4 (3)O29—S27—O30113.4 (2)
C8—C13—C14118.1 (3)O28—S27—C31103.9 (3)
N10—C14—C5121.7 (3)O29—S27—C31105.1 (3)
N10—C14—C13119.8 (3)O30—S27—C31103.8 (3)
C5—C14—C13118.5 (3)F34—C31—F33109.8 (6)
O17—C15—O16125.6 (3)F34—C31—F32102.9 (6)
O17—C15—C9124.7 (3)F33—C31—F32105.2 (6)
O16—C15—C9109.7 (3)F34—C31—S27114.0 (5)
C15—O16—C18119.9 (2)F33—C31—S27114.6 (5)
C23—C18—C19124.0 (3)F32—C31—S27109.3 (5)
C11—C1—C2—C30.1 (6)C9—C13—C14—N10−0.3 (4)
C1—C2—C3—C40.2 (7)C8—C13—C14—N10179.7 (3)
C2—C3—C4—C12−1.5 (7)C9—C13—C14—C5−179.6 (3)
C14—C5—C6—C70.1 (6)C8—C13—C14—C50.4 (5)
C5—C6—C7—C8−1.0 (7)C13—C9—C15—O17105.8 (4)
C6—C7—C8—C131.6 (6)C11—C9—C15—O17−73.8 (5)
C13—C9—C11—C1−176.8 (3)C13—C9—C15—O16−74.9 (4)
C15—C9—C11—C12.8 (5)C11—C9—C15—O16105.5 (3)
C13—C9—C11—C121.7 (5)O17—C15—O16—C181.2 (6)
C15—C9—C11—C12−178.7 (3)C9—C15—O16—C18−178.1 (3)
C2—C1—C11—C9179.2 (4)C15—O16—C18—C23−95.3 (4)
C2—C1—C11—C120.7 (5)C15—O16—C18—C1991.0 (4)
C14—N10—C12—C4179.4 (3)C23—C18—C19—C20−1.3 (5)
C26—N10—C12—C4−0.3 (5)O16—C18—C19—C20172.0 (3)
C14—N10—C12—C110.4 (5)C23—C18—C19—C24178.8 (3)
C26—N10—C12—C11−179.2 (3)O16—C18—C19—C24−7.9 (5)
C3—C4—C12—N10−176.6 (4)C18—C19—C20—C211.1 (5)
C3—C4—C12—C112.3 (5)C24—C19—C20—C21−178.9 (3)
C9—C11—C12—N10−1.5 (5)C19—C20—C21—C220.2 (5)
C1—C11—C12—N10177.0 (3)C20—C21—C22—C23−1.4 (5)
C9—C11—C12—C4179.5 (3)C20—C21—C22—C25179.1 (3)
C1—C11—C12—C4−1.9 (5)C19—C18—C23—C220.1 (5)
C11—C9—C13—C8179.1 (3)O16—C18—C23—C22−173.1 (3)
C15—C9—C13—C8−0.4 (5)C21—C22—C23—C181.2 (5)
C11—C9—C13—C14−0.8 (5)C25—C22—C23—C18−179.3 (3)
C15—C9—C13—C14179.6 (3)O28—S27—C31—F3467.3 (6)
C7—C8—C13—C9178.7 (3)O29—S27—C31—F34−57.8 (6)
C7—C8—C13—C14−1.3 (5)O30—S27—C31—F34−177.1 (6)
C12—N10—C14—C5179.8 (3)O28—S27—C31—F33−60.5 (6)
C26—N10—C14—C5−0.5 (5)O29—S27—C31—F33174.5 (5)
C12—N10—C14—C130.5 (4)O30—S27—C31—F3355.1 (6)
C26—N10—C14—C13−179.8 (3)O28—S27—C31—F32−178.2 (5)
C6—C5—C14—N10−179.2 (4)O29—S27—C31—F3256.7 (5)
C6—C5—C14—C130.2 (5)O30—S27—C31—F32−62.6 (5)
Cg2 is the centroid of the C1–C4/C11/C12 benzene ring.
D—H···AD—HH···AD···AD—H···A
C4—H4···O29i0.932.593.257 (5)129
C5—H5···O300.932.583.466 (5)160
C6—H6···O280.932.523.303 (5)142
C7—H7···O29ii0.932.393.188 (5)144
C20—H20···Cg2iii0.932.813.439 (4)126
C25—H25B···O28ii0.962.493.289 (5)141
C26—H26A···O30i0.962.473.314 (5)146
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C4/C11/C12 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O29i0.932.593.257 (5)129
C5—H5⋯O300.932.583.466 (5)160
C6—H6⋯O280.932.523.303 (5)142
C7—H7⋯O29ii0.932.393.188 (5)144
C20—H20⋯Cg2iii0.932.813.439 (4)126
C25—H25B⋯O28ii0.962.493.289 (5)141
C26—H26A⋯O30i0.962.473.314 (5)146

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Chemiluminogenic features of 10-methyl-9-(phenoxycarbonyl)acridinium trifluoromethanesulfonates alkyl substituted at the benzene ring in aqueous media.

Authors:  Karol Krzymiński; Agnieszka Ożóg; Piotr Malecha; Alexander D Roshal; Agnieszka Wróblewska; Beata Zadykowicz; Jerzy Błażejowski
Journal:  J Org Chem       Date:  2011-01-19       Impact factor: 4.354

3.  9-[(2,6-Dimethoxy-phen-oxy)carbon-yl]-10-methyl-acridinium trifluoro-methane-sulfonate.

Authors:  Karol Krzymiński; Damian Trzybiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-19

4.  Flow injection analysis of H2O2 in natural waters using acridinium ester chemiluminescence: method development and optimization using a kinetic model.

Authors:  D Whitney King; William J Cooper; Steven A Rusak; Barrie M Peake; James J Kiddle; Daniel W O'Sullivan; Megan L Melamed; Chris R Morgan; Stephen M Theberge
Journal:  Anal Chem       Date:  2007-04-25       Impact factor: 6.986

5.  Development and application of a novel acridinium ester for use as a chemiluminescent emitter in nucleic acid hybridisation assays using chemiluminescence quenching.

Authors:  Richard C Brown; Zhaoqiang Li; Andrew J Rutter; Xiaojing Mu; Owen H Weeks; Keith Smith; Ian Weeks
Journal:  Org Biomol Chem       Date:  2008-11-24       Impact factor: 3.876

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.