| Literature DB >> 22199721 |
Abstract
In the crystal structure of the title compound, C(3)H(8)N(2)O(2)·H(2)O, the organic mol-ecule exists as zwitterion with the carboxyl group deprotonated and the amino group protonated. In the crystal, the components are linked by O-H⋯O and N-H⋯O hydrogen bonds.Entities:
Year: 2011 PMID: 22199721 PMCID: PMC3238868 DOI: 10.1107/S1600536811044850
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H8N2O2·H2O | |
| Monoclinic, | Melting point: 358 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 1358 reflections | |
| θ = 2.4–18.3° | |
| µ = 0.12 mm−1 | |
| β = 98.889 (1)° | |
| Block, colorless | |
| 0.35 × 0.34 × 0.30 mm |
| Bruker APEX area-detector diffractometer | 1002 independent reflections |
| Radiation source: fine-focus sealed tube | 960 reflections with |
| graphite | |
| φ and ω scan | θmax = 25.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 2877 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1002 reflections | (Δ/σ)max < 0.001 |
| 82 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O3 | 0.79493 (17) | 0.47441 (13) | 0.42240 (14) | 0.0480 (4) | |
| H3A | 0.788 (2) | 0.472 (2) | 0.326 (3) | 0.050 (5)* | |
| H3B | 0.844 (3) | 0.391 (3) | 0.466 (3) | 0.069 (6)* | |
| O2 | 0.91742 (12) | 0.29983 (10) | 0.06003 (11) | 0.0324 (3) | |
| O1 | 0.75733 (13) | 0.50450 (10) | 0.08899 (11) | 0.0325 (3) | |
| N1 | 0.82463 (13) | 0.69023 (12) | −0.32825 (13) | 0.0270 (3) | |
| H1D | 0.9110 | 0.6736 | −0.2480 | 0.041* | |
| H1E | 0.8288 | 0.7855 | −0.3644 | 0.041* | |
| H1C | 0.8303 | 0.6260 | −0.4114 | 0.041* | |
| N2 | 0.76650 (14) | 0.40847 (12) | −0.16430 (13) | 0.0265 (3) | |
| H2 | 0.8216 | 0.3547 | −0.2257 | 0.032* | |
| C3 | 0.81591 (15) | 0.40494 (13) | 0.00256 (15) | 0.0235 (3) | |
| C2 | 0.62537 (16) | 0.49851 (15) | −0.24347 (16) | 0.0280 (3) | |
| H2A | 0.5340 | 0.4898 | −0.1790 | 0.034* | |
| H2B | 0.5862 | 0.4560 | −0.3521 | 0.034* | |
| C1 | 0.66425 (16) | 0.66607 (15) | −0.26316 (16) | 0.0288 (3) | |
| H1A | 0.5729 | 0.7126 | −0.3380 | 0.035* | |
| H1B | 0.6709 | 0.7161 | −0.1566 | 0.035* |
| O3 | 0.0844 (9) | 0.0333 (6) | 0.0250 (6) | 0.0148 (6) | 0.0046 (6) | −0.0027 (5) |
| O2 | 0.0397 (5) | 0.0250 (5) | 0.0294 (5) | 0.0052 (4) | −0.0050 (4) | 0.0000 (4) |
| O1 | 0.0459 (6) | 0.0274 (5) | 0.0252 (5) | 0.0038 (4) | 0.0084 (4) | −0.0035 (4) |
| N1 | 0.0343 (6) | 0.0222 (5) | 0.0239 (5) | −0.0015 (4) | 0.0022 (4) | 0.0029 (4) |
| N2 | 0.0349 (6) | 0.0236 (6) | 0.0213 (6) | 0.0056 (4) | 0.0050 (4) | 0.0001 (4) |
| C3 | 0.0279 (6) | 0.0183 (6) | 0.0243 (6) | −0.0041 (5) | 0.0044 (5) | 0.0003 (5) |
| C2 | 0.0273 (6) | 0.0297 (7) | 0.0263 (7) | −0.0017 (5) | 0.0018 (5) | 0.0038 (5) |
| C1 | 0.0316 (7) | 0.0263 (7) | 0.0283 (7) | 0.0062 (5) | 0.0036 (5) | 0.0023 (5) |
| O3—H3A | 0.78 (2) | N2—C3 | 1.3608 (16) |
| O3—H3B | 0.88 (3) | N2—C2 | 1.4499 (16) |
| O2—C3 | 1.2725 (15) | N2—H2 | 0.8600 |
| O1—C3 | 1.2603 (15) | C2—C1 | 1.5184 (18) |
| N1—C1 | 1.4828 (16) | C2—H2A | 0.9700 |
| N1—H1D | 0.8900 | C2—H2B | 0.9700 |
| N1—H1E | 0.8900 | C1—H1A | 0.9700 |
| N1—H1C | 0.8900 | C1—H1B | 0.9700 |
| H3A—O3—H3B | 110 (2) | N2—C2—C1 | 114.63 (10) |
| C1—N1—H1D | 109.5 | N2—C2—H2A | 108.6 |
| C1—N1—H1E | 109.5 | C1—C2—H2A | 108.6 |
| H1D—N1—H1E | 109.5 | N2—C2—H2B | 108.6 |
| C1—N1—H1C | 109.5 | C1—C2—H2B | 108.6 |
| H1D—N1—H1C | 109.5 | H2A—C2—H2B | 107.6 |
| H1E—N1—H1C | 109.5 | N1—C1—C2 | 112.39 (10) |
| C3—N2—C2 | 123.13 (10) | N1—C1—H1A | 109.1 |
| C3—N2—H2 | 118.4 | C2—C1—H1A | 109.1 |
| C2—N2—H2 | 118.4 | N1—C1—H1B | 109.1 |
| O1—C3—O2 | 124.74 (11) | C2—C1—H1B | 109.1 |
| O1—C3—N2 | 118.03 (11) | H1A—C1—H1B | 107.9 |
| O2—C3—N2 | 117.23 (11) | ||
| C2—N2—C3—O1 | −13.44 (17) | C3—N2—C2—C1 | 79.98 (15) |
| C2—N2—C3—O2 | 165.99 (11) | N2—C2—C1—N1 | 46.09 (15) |
| H··· | ||||
| O3—H3A···O1 | 0.80 (3) | 1.92 (3) | 2.708 (2) | 170 (3) |
| O3—H3B···O2i | 0.86 (3) | 1.92 (3) | 2.773 (2) | 171 (3) |
| N1—H1C···O3ii | 0.89 | 1.89 | 2.767 (2) | 167. |
| N1—H1D···O2iii | 0.89 | 1.91 | 2.775 (2) | 163. |
| N1—H1E···O1iv | 0.89 | 1.95 | 2.798 (2) | 158. |
| N2—H2···O2v | 0.86 | 2.43 | 3.278 (2) | 167. |
| C2—H2A···O1vi | 0.97 | 2.56 | 3.499 (2) | 163. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3 | 0.80 (3) | 1.92 (3) | 2.708 (2) | 170 (3) |
| O3—H3 | 0.86 (3) | 1.92 (3) | 2.773 (2) | 171 (3) |
| N1—H1 | 0.89 | 1.89 | 2.767 (2) | 167 |
| N1—H1 | 0.89 | 1.91 | 2.775 (2) | 163 |
| N1—H1 | 0.89 | 1.95 | 2.798 (2) | 158 |
| N2—H2⋯O2v | 0.86 | 2.43 | 3.278 (2) | 167 |
| C2—H2 | 0.97 | 2.56 | 3.499 (2) | 163 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .